SNP Profiles of EET 19 [ECU]   View Data

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 Key

 1 2 3 4 5 6 7 8 9 10 11 12 13 14
_Input profile
ATAACTCCAAAACTCTCCCTAGCTCTCT
1._CL_9_/11___
ATAACTCCAAAACTCTCCCTAGCTCTCT
2._CL_9_/11___
ATAACTCCAAAACTCTCCCTAGCTCTCT
3._CL_9_/11___
ATAACTCCAAAACTCTCCCTAGCTCTCT
4._CL_9_/11___
AT__CTCCAAAACTCT__CTAGCTCTCT
5._CL_9_/11___
ATAACTCC________CCCTAG__CT__
6._CL_9_/11___
ATAACTCC________CCCTAG__CT__
7._CL_9_/11___
ATAACTCC________CCCTAG__CT__
8._CL_9_/11___
ATAACTCC________CCCTAG__CT__
9._CL_9_/11___
AT__CTCC__________CTAG__CT__
10._CL_9_/11___
ATCCCCCC________CCTTGG__CT__
 15 16 17 18 19 20 21 22 23 24 25 26 27 28
_Input profile
TTACAAAGCGGGGGCCAGCTGGAATTCC
1._CL_9_/11___
TTACAAAGCGGGGGCCAGCTGGAATTCC
2._CL_9_/11___
TTACAAAGCGGGGGCCAGCTGGAATTCC
3._CL_9_/11___
TTACAAAGCGGGGGCCAGCTGGAA__CC
4._CL_9_/11___
TTACAAAGCGGGGGCCAGCTGGAA__CC
5._CL_9_/11___
______AG____GG________AATT__
6._CL_9_/11___
______AG____GG________AATT__
7._CL_9_/11___
______AG____GG________AATT__
8._CL_9_/11___
______AG____GG________AA____
9._CL_9_/11___
______AG____GG________AA____
10._CL_9_/11___
______GG____GG________AAAT__
 29 30 31 32 33 34 35 36 37 38 39 40 41 42
_Input profile
GGATTTTTGGCGCCAAGGGGTTAGCTAG
1._CL_9_/11___
GGATTTTTGGCGCCAAGGGGTTAGCTAG
2._CL_9_/11___
GGATTTTTGGCGCCAAGGGGTTAGCTAG
3._CL_9_/11___
GGATTTTTGGCGCCAAGGGGTTAGCTAG
4._CL_9_/11___
GGATTTTTGGCGCCAAGGGGTTAGCTAG
5._CL_9_/11___
GGAT______CG__AAGG____AG____
6._CL_9_/11___
GGAT______CG__AAGG____AG____
7._CL_9_/11___
GGAT______CG__AAGG____AG____
8._CL_9_/11___
GGAT______CG__AAGG____AG____
9._CL_9_/11___
GGAT______CG__AAGG____AG____
10._CL_9_/11___
GGAT______CC__GGTT____AG____
 43 44 45 46 47 48 49 50 51 52 53 54 55 56
_Input profile
CGGTATCTAAGGAGCTACGGAATTCTCT
1._CL_9_/11___
CGGTATCTAAGGAGCTACGGAATTCTCT
2._CL_9_/11___
CGGTATCTAAGGAGCTACGGAATTCTCT
3._CL_9_/11___
CGGTATCTAAGGAGCTACGGAATTCTCT
4._CL_9_/11___
CGGTATCTAAGGAGCTACGGAATTCTCT
5._CL_9_/11___
______CT________________CTCT
6._CL_9_/11___
______CT________________CTCT
7._CL_9_/11___
______CT________________CTCT
8._CL_9_/11___
______CT________________CTCT
9._CL_9_/11___
______CT________________CTCT
10._CL_9_/11___
______CT________________CCCT
 57 58 59 60 61 62 63 64 65 66 67 68 69 70
_Input profile
GTAGCCCTCTCCCGGGCCAAGGGGAGTT
1._CL_9_/11___
GTAGCCCTCTCCCGGGCCAAGGGGAGTT
2._CL_9_/11___
GTAGCCCTCTCCCGGGCCAAGGGGAGTT
3._CL_9_/11___
GTAGCCCTCTCCCGGGCCAAGGGGAGTT
4._CL_9_/11___
GTAGCCCTCTCCCGGGCCAAGGGGAGTT
5._CL_9_/11___
____CC__CTCCCG__CCAAGGGG____
6._CL_9_/11___
____CC__CTCCCG__CCAAGGGG____
7._CL_9_/11___
____CC__CTCCCG__CCAAGGGG____
8._CL_9_/11___
____CC__CTCCCG__CCAAGGGG____
9._CL_9_/11___
____CC__CTCCCG__CCAAGGGG____
10._CL_9_/11___
____CC__CCCCGG__CCAGGGTT____
 71 72 73 74 75 76 77 78 79 80 81 82 83 84
_Input profile
CCAGCTACGGAAACAAACCGCCAAACTT
1._CL_9_/11___
CCAGCTACGGAAACAAACCGCCAAACTT
2._CL_9_/11___
CCAGCTACGGAAACAAACCGCCAAACTT
3._CL_9_/11___
CCAGCTACGGAAACAAACCGCCAAACTT
4._CL_9_/11___
CCAGCTACGG__ACAAACCGCC__ACTT
5._CL_9_/11___
__AGCT__________ACCG______TT
6._CL_9_/11___
__AGCT__________ACCG______TT
7._CL_9_/11___
__AGCT__________ACCG______TT
8._CL_9_/11___
__AGCT__________ACCG______TT
9._CL_9_/11___
__AGCT__________ACCG______TT
10._CL_9_/11___
__GGCT__________AACC______TT
 85 86 87 88 89 90 91 92 93 94     
_Input profile
TTCTTTGGCCCCGGCTATGGX_XX_XX_XX_X
1._CL_9_/11___
TTCTTTGGCCCCGGCTATGGX_XX_XX_XX_X
2._CL_9_/11___
TTCTTTGGCCCCGGCTATGGX_XX_XX_XX_X
3._CL_9_/11___
TTCTTTGGCCCCGGCTATGGX_XX_XX_XX_X
4._CL_9_/11___
TTCTTTGGCCCCGGCTATGGX_XX_XX_XX_X
5._CL_9_/11___
TTCT__GG__CCGGCT____X_XX_XX_XX_X
6._CL_9_/11___
TTCT__GG__CCGGCT____X_XX_XX_XX_X
7._CL_9_/11___
TTCT__GG__CCGGCT____X_XX_XX_XX_X
8._CL_9_/11___
TTCT__GG__CCGGCT____X_XX_XX_XX_X
9._CL_9_/11___
TTCT__GG__CCGGCT____X_XX_XX_XX_X
10._CL_9_/11___
TTCC__GG__CCGTTT____X_XX_XX_XX_X

Input profile: CL_9_/11 GC-08-151-3-50

 
Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: 4
 Mars, 2018

1._CL_9_/11 GC-08-151-3-50

identical
94 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 7
Notes: 7
 Mars, 2018

2._CL_9_/11 GC-08-151-3-50

identical
94 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 11
Notes: 11
 Mars, 2018

3._CL_9_/11 GC-08-151-3-50

identical
93 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 9
Notes: 9
 Mars, 2018

4._CL_9_/11 GC-08-151-3-50

identical
89 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1
 Mars, 2018

5._CL_9_/11

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8350 11
 Dapeng Zhang, 2016

6._CL_9_/11

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8350 7
 Dapeng Zhang, 2016

7._CL_9_/11

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8350 4
 Dapeng Zhang, 2016

8._CL_9_/11

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8350 9
 Dapeng Zhang, 2016

9._CL_9_/11

identical
37 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8350 1
 Dapeng Zhang, 2016

10._CL_9_/11

70 %
40 shared markers

International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: Marper C 520
 Dapeng Zhang, 2016

 


  Key to SNP Markers

1TcSNP1075 2TcSNP1350 3TcSNP534 4TcSNP591 5TcSNP42
6TcSNP418 7TcSNP702 8TcSNP1096 9TcSNP1060 10TcSNP1165
11TcSNP429 12TcSNP75 13TcSNP891 14TcSNP122 15TcSNP316
16TcSNP521 17TcSNP860 18TcSNP1062 19TcSNP836 20TcSNP878
21TcSNP929 22TcSNP413 23TcSNP653 24TcSNP1149 25TcSNP174
26TcSNP32 27TcSNP372 28TcSNP448 29TcSNP872 30TcSNP953
31TcSNP1034 32TcSNP1175 33TcSNP1111 34TcSNP577 35TcSNP90
36TcSNP998 37TcSNP150 38TcSNP28 39TcSNP751 40TcSNP1484
41TcSNP602 42TcSNP561 43TcSNP894 44TcSNP1063 45TcSNP1126
46TcSNP1270 47TcSNP606 48TcSNP329 49TcSNP689 50TcSNP944
51TcSNP1242 52TcSNP1383 53TcSNP547 54TcSNP776 55TcSNP151
56TcSNP1520 57TcSNP799 58TcSNP899 59TcSNP226 60TcSNP1439
61TcSNP1442 62TcSNP193 63TcSNP25 64TcSNP364 65TcSNP144
66TcSNP230 67TcSNP560 68TcSNP723 69TcSNP731 70TcSNP701
71TcSNP1041 72TcSNP645 73TcSNP917 74Tcm003s01336581 75Tcm003s07402719
76Tcm001s00947643 77Tcm006s26664133 78Tcm002s20575712 79TcSNP529 80TcSNP1458
81TcSNP60 82TcSNP430 83TcSNP823 84TcSNP619 85TcSNP994
86TcSNP1144 87TcSNP1156 88TcSNP469 89TcSNP999 90TcSNP242
91TcSNP1253 92TcSNP1414 93TcSNP154 94TcSNP240