SNP Profiles of CL-911   View Data

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 Key

 1 2 3 4 5 6 7 8 9 10 11 12 13 14
_Input profile
ATCTCCAAAACTCTCTAGCTCTCTTTAC
1._GC-08-151-3-50
ATCTCCAAAACTCTCTAGCTCTCTTTAC
2._GC-08-151-3-50
ATCTCCAAAACTCTCTAGCTCTCTTTAC
3._GC-08-151-3-50
ATCTCCAAAACTCTCTAGCTCTCTTTAC
4._GC-08-151-3-50
ATCTCCAAAACTCTCTAGCTCTCTTTAC
5._CL_9_/11
ATCTCC________CTAG__CT______
6._CL_9_/11
ATCTCC________CTAG__CT______
7._CL_9_/11
ATCTCC________CTAG__CT______
8._CL_9_/11
ATCTCC________CTAG__CT______
9._CL_9_/11
ATCTCC________CTAG__CT______
10._CL_9_/11
ATCCCC________TTGG__CT______
 15 16 17 18 19 20 21 22 23 24 25 26 27 28
_Input profile
AAAGCGGGGGCCAGCTGGAACCGGATTT
1._GC-08-151-3-50
AAAGCGGGGGCCAGCTGGAACCGGATTT
2._GC-08-151-3-50
AAAGCGGGGGCCAGCTGGAACCGGATTT
3._GC-08-151-3-50
AAAGCGGGGGCCAGCTGGAACCGGATTT
4._GC-08-151-3-50
AAAGCGGGGGCCAGCTGGAACCGGATTT
5._CL_9_/11
__AG____GG________AA__GGAT__
6._CL_9_/11
__AG____GG________AA__GGAT__
7._CL_9_/11
__AG____GG________AA__GGAT__
8._CL_9_/11
__AG____GG________AA__GGAT__
9._CL_9_/11
__AG____GG________AA__GGAT__
10._CL_9_/11
__GG____GG________AA__GGAT__
 29 30 31 32 33 34 35 36 37 38 39 40 41 42
_Input profile
TTGGCGCCAAGGGGTTAGCTAGCGGTAT
1._GC-08-151-3-50
TTGGCGCCAAGGGGTTAGCTAGCGGTAT
2._GC-08-151-3-50
TTGGCGCCAAGGGGTTAGCTAGCGGTAT
3._GC-08-151-3-50
TTGGCGCCAAGGGGTTAGCTAGCGGTAT
4._GC-08-151-3-50
TTGGCGCCAAGGGGTTAGCTAGCGGTAT
5._CL_9_/11
____CG__AAGG____AG__________
6._CL_9_/11
____CG__AAGG____AG__________
7._CL_9_/11
____CG__AAGG____AG__________
8._CL_9_/11
____CG__AAGG____AG__________
9._CL_9_/11
____CG__AAGG____AG__________
10._CL_9_/11
____CC__GGTT____AG__________
 43 44 45 46 47 48 49 50 51 52 53 54 55 56
_Input profile
CTAAGGAGCTACGGAATTTTCTCTGTAG
1._GC-08-151-3-50
CTAAGGAGCTACGGAATT__CTCTGTAG
2._GC-08-151-3-50
CTAAGGAGCTACGGAATT__CTCTGTAG
3._GC-08-151-3-50
CTAAGGAGCTACGGAATT__CTCTGTAG
4._GC-08-151-3-50
CTAAGGAGCTACGGAATT__CTCTGTAG
5._CL_9_/11
CT__________________CTCT____
6._CL_9_/11
CT__________________CTCT____
7._CL_9_/11
CT__________________CTCT____
8._CL_9_/11
CT__________________CTCT____
9._CL_9_/11
CT__________________CTCT____
10._CL_9_/11
CT__________________CCCT____
 57 58 59 60 61 62 63 64 65 66 67 68 69 70
_Input profile
CCCTCTCCCGGGCCAAGGGGAGTTCCAG
1._GC-08-151-3-50
CCCTCTCCCGGGCCAAGGGGAGTTCCAG
2._GC-08-151-3-50
CCCTCTCCCGGGCCAAGGGGAGTTCCAG
3._GC-08-151-3-50
CCCTCTCCCGGGCCAAGGGGAGTTCCAG
4._GC-08-151-3-50
CCCTCTCCCGGGCCAAGGGGAGTTCCAG
5._CL_9_/11
CC__CTCCCG__CCAAGGGG______AG
6._CL_9_/11
CC__CTCCCG__CCAAGGGG______AG
7._CL_9_/11
CC__CTCCCG__CCAAGGGG______AG
8._CL_9_/11
CC__CTCCCG__CCAAGGGG______AG
9._CL_9_/11
CC__CTCCCG__CCAAGGGG______AG
10._CL_9_/11
CC__CCCCGG__CCAGGGTT______GG
 71 72 73 74 75 76 77 78 79 80 81 82 83 84
_Input profile
CTACGGACAAACCGCCACTTTTCTTTGG
1._GC-08-151-3-50
CTACGGACAAACCGCCACTTTTCTTTGG
2._GC-08-151-3-50
CTACGGACAAACCGCCACTTTTCTTTGG
3._GC-08-151-3-50
CTACGGACAAACCGCCACTTTTCTTTGG
4._GC-08-151-3-50
CTACGGACAAACCGCCACTTTTCTTTGG
5._CL_9_/11
CT________ACCG____TTTTCT__GG
6._CL_9_/11
CT________ACCG____TTTTCT__GG
7._CL_9_/11
CT________ACCG____TTTTCT__GG
8._CL_9_/11
CT________ACCG____TTTTCT__GG
9._CL_9_/11
CT________ACCG____TTTTCT__GG
10._CL_9_/11
CT________AACC____TTTTCC__GG
 85 86 87 88 89 90         
_Input profile
CCCCGGCTATGGX_XX_XX_XX_XX_XX_XX_XX_X
1._GC-08-151-3-50
CCCCGGCTATGGX_XX_XX_XX_XX_XX_XX_XX_X
2._GC-08-151-3-50
CCCCGGCTATGGX_XX_XX_XX_XX_XX_XX_XX_X
3._GC-08-151-3-50
CCCCGGCTATGGX_XX_XX_XX_XX_XX_XX_XX_X
4._GC-08-151-3-50
CCCCGGCTATGGX_XX_XX_XX_XX_XX_XX_XX_X
5._CL_9_/11
__CCGGCT____X_XX_XX_XX_XX_XX_XX_XX_X
6._CL_9_/11
__CCGGCT____X_XX_XX_XX_XX_XX_XX_XX_X
7._CL_9_/11
__CCGGCT____X_XX_XX_XX_XX_XX_XX_XX_X
8._CL_9_/11
__CCGGCT____X_XX_XX_XX_XX_XX_XX_XX_X
9._CL_9_/11
__CCGGCT____X_XX_XX_XX_XX_XX_XX_XX_X
10._CL_9_/11
__CCGTTT____X_XX_XX_XX_XX_XX_XX_XX_X

Input profile: CL_9_/11 GC-08-151-3-50

 
Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1
 Mars, 2018

1._CL_9_/11 GC-08-151-3-50

identical
89 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: 4
 Mars, 2018

2._CL_9_/11 GC-08-151-3-50

identical
89 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 7
Notes: 7
 Mars, 2018

3._CL_9_/11 GC-08-151-3-50

identical
89 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 9
Notes: 9
 Mars, 2018

4._CL_9_/11 GC-08-151-3-50

identical
89 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 11
Notes: 11
 Mars, 2018

5._CL_9_/11

identical
37 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8350 11
 Dapeng Zhang, 2016

6._CL_9_/11

identical
37 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8350 9
 Dapeng Zhang, 2016

7._CL_9_/11

identical
37 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8350 7
 Dapeng Zhang, 2016

8._CL_9_/11

identical
37 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8350 4
 Dapeng Zhang, 2016

9._CL_9_/11

identical
37 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8350 1
 Dapeng Zhang, 2016

10._CL_9_/11

71.6 %
37 shared markers

International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: Marper C 520
 Dapeng Zhang, 2016

 


  Key to SNP Markers

1TcSNP1075 2TcSNP534 3TcSNP591 4TcSNP42 5TcSNP418
6TcSNP702 7TcSNP1096 8TcSNP1165 9TcSNP429 10TcSNP75
11TcSNP891 12TcSNP122 13TcSNP316 14TcSNP521 15TcSNP860
16TcSNP1062 17TcSNP836 18TcSNP878 19TcSNP929 20TcSNP413
21TcSNP653 22TcSNP1149 23TcSNP174 24TcSNP32 25TcSNP448
26TcSNP872 27TcSNP953 28TcSNP1034 29TcSNP1175 30TcSNP1111
31TcSNP577 32TcSNP90 33TcSNP998 34TcSNP150 35TcSNP28
36TcSNP751 37TcSNP1484 38TcSNP602 39TcSNP561 40TcSNP894
41TcSNP1063 42TcSNP1126 43TcSNP1270 44TcSNP606 45TcSNP329
46TcSNP689 47TcSNP944 48TcSNP1242 49TcSNP1383 50TcSNP547
51TcSNP776 52TcSNP1309 53TcSNP151 54TcSNP1520 55TcSNP799
56TcSNP899 57TcSNP226 58TcSNP1439 59TcSNP1442 60TcSNP193
61TcSNP25 62TcSNP364 63TcSNP144 64TcSNP230 65TcSNP560
66TcSNP723 67TcSNP731 68TcSNP701 69TcSNP1041 70TcSNP645
71TcSNP917 72Tcm003s01336581 73Tcm003s07402719 74Tcm006s26664133 75Tcm002s20575712
76TcSNP529 77TcSNP1458 78TcSNP60 79TcSNP823 80TcSNP619
81TcSNP994 82TcSNP1144 83TcSNP1156 84TcSNP469 85TcSNP999
86TcSNP242 87TcSNP1253 88TcSNP1414 89TcSNP154 90TcSNP240