SNP Profiles of CL 9 /11   View Data

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 Key

 1234567891011121314
_Input profile
ATCTCCAAAACTCTCTAGCTCTCTTTAC
1._GC-08-151-3-50
ATCTCCAAAACTCTCTAGCTCTCTTTAC
2._GC-08-151-3-50
ATCTCCAAAACTCTCTAGCTCTCTTTAC
3._GC-08-151-3-50
ATCTCCAAAACTCTCTAGCTCTCTTTAC
4._GC-08-151-3-50
ATCTCCAAAACTCTCTAGCTCTCTTTAC
5._CL_9_/11
ATCTCC____CTAG_CT___
6._CL_9_/11
ATCTCC____CTAG_CT___
7._CL_9_/11
ATCTCC____CTAG_CT___
8._CL_9_/11
ATCTCC____CTAG_CT___
9._CL_9_/11
ATCTCC____CTAG_CT___
10._CL_9_/11
ATCCCC____TTGG_CT___
 1516171819202122232425262728
_Input profile
AAAGCGGGGGCCAGCTGGAACCGGATTT
1._GC-08-151-3-50
AAAGCGGGGGCCAGCTGGAACCGGATTT
2._GC-08-151-3-50
AAAGCGGGGGCCAGCTGGAACCGGATTT
3._GC-08-151-3-50
AAAGCGGGGGCCAGCTGGAACCGGATTT
4._GC-08-151-3-50
AAAGCGGGGGCCAGCTGGAACCGGATTT
5._CL_9_/11
_AG__GG____AA_GGAT_
6._CL_9_/11
_AG__GG____AA_GGAT_
7._CL_9_/11
_AG__GG____AA_GGAT_
8._CL_9_/11
_AG__GG____AA_GGAT_
9._CL_9_/11
_AG__GG____AA_GGAT_
10._CL_9_/11
_GG__GG____AA_GGAT_
 2930313233343536373839404142
_Input profile
TTGGCGCCAAGGGGTTAGCTAGCGGTAT
1._GC-08-151-3-50
TTGGCGCCAAGGGGTTAGCTAGCGGTAT
2._GC-08-151-3-50
TTGGCGCCAAGGGGTTAGCTAGCGGTAT
3._GC-08-151-3-50
TTGGCGCCAAGGGGTTAGCTAGCGGTAT
4._GC-08-151-3-50
TTGGCGCCAAGGGGTTAGCTAGCGGTAT
5._CL_9_/11
__CG_AAGG__AG_____
6._CL_9_/11
__CG_AAGG__AG_____
7._CL_9_/11
__CG_AAGG__AG_____
8._CL_9_/11
__CG_AAGG__AG_____
9._CL_9_/11
__CG_AAGG__AG_____
10._CL_9_/11
__CC_GGTT__AG_____
 4344454647484950515253545556
_Input profile
CTAAGGAGCTACGGAATTTTCTCTGTAG
1._GC-08-151-3-50
CTAAGGAGCTACGGAATT_CTCTGTAG
2._GC-08-151-3-50
CTAAGGAGCTACGGAATT_CTCTGTAG
3._GC-08-151-3-50
CTAAGGAGCTACGGAATT_CTCTGTAG
4._GC-08-151-3-50
CTAAGGAGCTACGGAATT_CTCTGTAG
5._CL_9_/11
CT_________CTCT__
6._CL_9_/11
CT_________CTCT__
7._CL_9_/11
CT_________CTCT__
8._CL_9_/11
CT_________CTCT__
9._CL_9_/11
CT_________CTCT__
10._CL_9_/11
CT_________CCCT__
 5758596061626364656667686970
_Input profile
CCCTCTCCCGGGCCAAGGGGAGTTCCAG
1._GC-08-151-3-50
CCCTCTCCCGGGCCAAGGGGAGTTCCAG
2._GC-08-151-3-50
CCCTCTCCCGGGCCAAGGGGAGTTCCAG
3._GC-08-151-3-50
CCCTCTCCCGGGCCAAGGGGAGTTCCAG
4._GC-08-151-3-50
CCCTCTCCCGGGCCAAGGGGAGTTCCAG
5._CL_9_/11
CC_CTCCCG_CCAAGGGG___AG
6._CL_9_/11
CC_CTCCCG_CCAAGGGG___AG
7._CL_9_/11
CC_CTCCCG_CCAAGGGG___AG
8._CL_9_/11
CC_CTCCCG_CCAAGGGG___AG
9._CL_9_/11
CC_CTCCCG_CCAAGGGG___AG
10._CL_9_/11
CC_CCCCGG_CCAGGGTT___GG
 7172737475767778798081828384
_Input profile
CTACGGACAAACCGCCACTTTTCTTTGG
1._GC-08-151-3-50
CTACGGACAAACCGCCACTTTTCTTTGG
2._GC-08-151-3-50
CTACGGACAAACCGCCACTTTTCTTTGG
3._GC-08-151-3-50
CTACGGACAAACCGCCACTTTTCTTTGG
4._GC-08-151-3-50
CTACGGACAAACCGCCACTTTTCTTTGG
5._CL_9_/11
CT____ACCG__TTTTCT_GG
6._CL_9_/11
CT____ACCG__TTTTCT_GG
7._CL_9_/11
CT____ACCG__TTTTCT_GG
8._CL_9_/11
CT____ACCG__TTTTCT_GG
9._CL_9_/11
CT____ACCG__TTTTCT_GG
10._CL_9_/11
CT____AACC__TTTTCC_GG
 858687888990        
_Input profile
CCCCGGCTATGGX_XX_XX_XX_XX_XX_XX_XX_X
1._GC-08-151-3-50
CCCCGGCTATGGX_XX_XX_XX_XX_XX_XX_XX_X
2._GC-08-151-3-50
CCCCGGCTATGGX_XX_XX_XX_XX_XX_XX_XX_X
3._GC-08-151-3-50
CCCCGGCTATGGX_XX_XX_XX_XX_XX_XX_XX_X
4._GC-08-151-3-50
CCCCGGCTATGGX_XX_XX_XX_XX_XX_XX_XX_X
5._CL_9_/11
_CCGGCT__X_XX_XX_XX_XX_XX_XX_XX_X
6._CL_9_/11
_CCGGCT__X_XX_XX_XX_XX_XX_XX_XX_X
7._CL_9_/11
_CCGGCT__X_XX_XX_XX_XX_XX_XX_XX_X
8._CL_9_/11
_CCGGCT__X_XX_XX_XX_XX_XX_XX_XX_X
9._CL_9_/11
_CCGGCT__X_XX_XX_XX_XX_XX_XX_XX_X
10._CL_9_/11
_CCGTTT__X_XX_XX_XX_XX_XX_XX_XX_X

Input profile: CL_9_/11 GC-08-151-3-50

 
Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1
 Mars, 2018

1._CL_9_/11 GC-08-151-3-50

identical
89 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: 4
 Mars, 2018

2._CL_9_/11 GC-08-151-3-50

identical
89 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 7
Notes: 7
 Mars, 2018

3._CL_9_/11 GC-08-151-3-50

identical
89 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 9
Notes: 9
 Mars, 2018

4._CL_9_/11 GC-08-151-3-50

identical
89 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 11
Notes: 11
 Mars, 2018

5._CL_9_/11

identical
37 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8350 11
 Dapeng Zhang, 2016

6._CL_9_/11

identical
37 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8350 9
 Dapeng Zhang, 2016

7._CL_9_/11

identical
37 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8350 7
 Dapeng Zhang, 2016

8._CL_9_/11

identical
37 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8350 4
 Dapeng Zhang, 2016

9._CL_9_/11

identical
37 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8350 1
 Dapeng Zhang, 2016
Population Assignment: 
 Dapeng Zhang, 2016

10._CL_9_/11

71.6 %
37 shared markers

International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: Marper C 520
 Dapeng Zhang, 2016

 


  Key to SNP Markers

1TcSNP1075 2TcSNP534 3TcSNP591 4TcSNP42 5TcSNP418
6TcSNP702 7TcSNP1096 8TcSNP1165 9TcSNP429 10TcSNP75
11TcSNP891 12TcSNP122 13TcSNP316 14TcSNP521 15TcSNP860
16TcSNP1062 17TcSNP836 18TcSNP878 19TcSNP929 20TcSNP413
21TcSNP653 22TcSNP1149 23TcSNP174 24TcSNP32 25TcSNP448
26TcSNP872 27TcSNP953 28TcSNP1034 29TcSNP1175 30TcSNP1111
31TcSNP577 32TcSNP90 33TcSNP998 34TcSNP150 35TcSNP28
36TcSNP751 37TcSNP1484 38TcSNP602 39TcSNP561 40TcSNP894
41TcSNP1063 42TcSNP1126 43TcSNP1270 44TcSNP606 45TcSNP329
46TcSNP689 47TcSNP944 48TcSNP1242 49TcSNP1383 50TcSNP547
51TcSNP776 52TcSNP1309 53TcSNP151 54TcSNP1520 55TcSNP799
56TcSNP899 57TcSNP226 58TcSNP1439 59TcSNP1442 60TcSNP193
61TcSNP25 62TcSNP364 63TcSNP144 64TcSNP230 65TcSNP560
66TcSNP723 67TcSNP731 68TcSNP701 69TcSNP1041 70TcSNP645
71TcSNP917 72Tcm003s01336581 73Tcm003s07402719 74Tcm006s26664133 75Tcm002s20575712
76TcSNP529 77TcSNP1458 78TcSNP60 79TcSNP823 80TcSNP619
81TcSNP994 82TcSNP1144 83TcSNP1156 84TcSNP469 85TcSNP999
86TcSNP242 87TcSNP1253 88TcSNP1414 89TcSNP154 90TcSNP240