SNP Profiles of JA 6 /2 [POU]   View Data

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 Key

 1 2 3 4 5 6 7 8 9 10 11 12 13 14
_Input profile
TTCCCCAAAATTTTCCCTAGTTCTCTAT
1._GC-08-091-2-14
TTCCCCAAAATTTTCCCTAGTTCTCTAT
2._JA_6_/2_[POU]
TTCCCC________CCCTAG__CT____
3._JA_6_/2_[POU]
TTCCCC________CCCTAG__CT____
4._JA_6_/2_[POU]
TTCCCC________CCCTAG__CT____
5._JA_6_/2_[POU]
TTCCCC________CCCTAG__CT____
6._JA_6_/2_[POU]
TTCCCC________CCCTAG__CT____
7._JA_6_/2_[POU]
TTCCCC________CCCTAG__CT____
8._JA_6_/2_[POU]
TTCCCC________CCCTAG__CT____
9._JA_6_/2_[POU]
TTCCCC________CCCTAG__CT____
10._JA_6_/2_[POU]
TTCCCC________CCCTAG__CT____
11._JA_6_/2_[POU]
TTCCCC________CCCTAG__CT____
12._JA_6_/2_[POU]
TTCCCC________CCCTAG__CT____
13._JA_6_/2_[POU]
__CCCC________CCCTAG__CT____
14._JA_6_/2_[POU]
ATCCCC________CCCTAG__CT____
15._JA_6_/2_[POU]
ATCTCC________CCCTGG__CT____
 15 16 17 18 19 20 21 22 23 24 25 26 27 28
_Input profile
ACAAAACGCCGGCTAACTGGATATCCGG
1._GC-08-091-2-14
ACAAAACGCCGGCTAACTGGATATCCGG
2._JA_6_/2_[POU]
____AA____GG________ATAT__GG
3._JA_6_/2_[POU]
____AA____GG________ATAT__GG
4._JA_6_/2_[POU]
____AA____GG________ATAT__GG
5._JA_6_/2_[POU]
____AA____GG________ATAT__GG
6._JA_6_/2_[POU]
____AA____GG________ATAT__GG
7._JA_6_/2_[POU]
____AA____GG________ATAT__GG
8._JA_6_/2_[POU]
____AA____GG________ATAT__GG
9._JA_6_/2_[POU]
____AA____GG________ATAT__GG
10._JA_6_/2_[POU]
____AA____GG________ATAT__GG
11._JA_6_/2_[POU]
____AA____GG________ATAT__GG
12._JA_6_/2_[POU]
____AA____GG________ATAT__GG
13._JA_6_/2_[POU]
____AA____GG________ATAT__GG
14._JA_6_/2_[POU]
____AA____GG________ATAT__GG
15._JA_6_/2_[POU]
____AG____GG________ATAT__GG
 29 30 31 32 33 34 35 36 37 38 39 40 41 42
_Input profile
ATTTTTAGCCCCAAGTGGTTGGCTGGCG
1._GC-08-091-2-14
ATTTTTAGCCCCAAGTGGTTGGCTGGCG
2._JA_6_/2_[POU]
AT______CC__AAGT____GG______
3._JA_6_/2_[POU]
AT______CC__AAGT____GG______
4._JA_6_/2_[POU]
AT______CC__AAGT____GG______
5._JA_6_/2_[POU]
AT______CC__AAGT____GG______
6._JA_6_/2_[POU]
AT______CC__AAGT____GG______
7._JA_6_/2_[POU]
AT______CC__AAGT____GG______
8._JA_6_/2_[POU]
AT______CC__AAGT____GG______
9._JA_6_/2_[POU]
AT______CC__AAGT____GG______
10._JA_6_/2_[POU]
AT______CC__AAGT____GG______
11._JA_6_/2_[POU]
AT______CC__AAGT____GG______
12._JA_6_/2_[POU]
AT______CC__AAGT____GG______
13._JA_6_/2_[POU]
AT______CC__AAGT____GG______
14._JA_6_/2_[POU]
AT______CC__AAGT____GG______
15._JA_6_/2_[POU]
AT______CG__AGGT____AG______
 43 44 45 46 47 48 49 50 51 52 53 54 55 56
_Input profile
GGTTCTAAGGAACCACGGAATTCTCCTT
1._GC-08-091-2-14
GGTTCTAAGGAACCACGGAATTCTCCTT
2._JA_6_/2_[POU]
____CT________________CTCC__
3._JA_6_/2_[POU]
____CT________________CTCC__
4._JA_6_/2_[POU]
____CT________________CTCC__
5._JA_6_/2_[POU]
____CT________________CTCC__
6._JA_6_/2_[POU]
____CT________________CTCC__
7._JA_6_/2_[POU]
____CT________________CTCC__
8._JA_6_/2_[POU]
____CT________________CTCC__
9._JA_6_/2_[POU]
____CT________________CTCC__
10._JA_6_/2_[POU]
____CT________________CTCC__
11._JA_6_/2_[POU]
____CT________________CTCC__
12._JA_6_/2_[POU]
____CT__________________CC__
13._JA_6_/2_[POU]
____CT________________CTCC__
14._JA_6_/2_[POU]
____CT________________CTCC__
15._JA_6_/2_[POU]
____CT________________CTCT__
 57 58 59 60 61 62 63 64 65 66 67 68 69 70
_Input profile
AGCCCCCTACCGAGCCAAGGGGAGTTCC
1._GC-08-091-2-14
AGCCCCCTACCGAGCCAAGGGGAGTTCC
2._JA_6_/2_[POU]
__CC__CTACCG__CCAAGGGG______
3._JA_6_/2_[POU]
__CC__CTACCG__CCAAGGGG______
4._JA_6_/2_[POU]
__CC__CTACCG__CCAAGGGG______
5._JA_6_/2_[POU]
__CC__CTACCG__CCAAGGGG______
6._JA_6_/2_[POU]
__CC__CTACCG__CCAAGGGG______
7._JA_6_/2_[POU]
__CC__CTACCG__CCAAGGGG______
8._JA_6_/2_[POU]
__CC__CTACCG__CCAAGGGG______
9._JA_6_/2_[POU]
__CC__CTACCG__CCAAGGGG______
10._JA_6_/2_[POU]
__CC__CTACCG__CCAAGGGG______
11._JA_6_/2_[POU]
__CC__CTACCG__CCAAGGGG______
12._JA_6_/2_[POU]
__CC__CTACCG__CCAAGGGG______
13._JA_6_/2_[POU]
__CC__CTACCG__CCAAGG________
14._JA_6_/2_[POU]
__CC__CTACCG__CCAAGGGG______
15._JA_6_/2_[POU]
__CG__CTCCCG__CCAAGTGG______
 71 72 73 74 75 76 77 78 79 80 81 82 83 84
_Input profile
AACTAAAACCACAGAACCCCAACCCTTT
1._GC-08-091-2-14
AACTAAAACCACAGAACCCCAACCCTTT
2._JA_6_/2_[POU]
AACT__________AACC______CTTT
3._JA_6_/2_[POU]
AACT__________AACC______CTTT
4._JA_6_/2_[POU]
AACT__________AACC______CTTT
5._JA_6_/2_[POU]
AACT__________AACC______CTTT
6._JA_6_/2_[POU]
AACT__________AACC______CTTT
7._JA_6_/2_[POU]
AACT__________AACC______CTTT
8._JA_6_/2_[POU]
AACT__________AACC______CTTT
9._JA_6_/2_[POU]
AACT__________AACC______CTTT
10._JA_6_/2_[POU]
AACT__________AACC______CTTT
11._JA_6_/2_[POU]
AACT__________AACC______CTTT
12._JA_6_/2_[POU]
AACT__________AACC______CTTT
13._JA_6_/2_[POU]
AACT__________AACC______CTTT
14._JA_6_/2_[POU]
AGCT__________AACC______CTTT
15._JA_6_/2_[POU]
AACT__________ACCG______TTTT
 85 86 87 88 89 90 91 92 93      
_Input profile
CCCTAGCCCCGTCTTTGGX_XX_XX_XX_XX_X
1._GC-08-091-2-14
CCCTAGCCCCGTCTTTGGX_XX_XX_XX_XX_X
2._JA_6_/2_[POU]
CC__AG__CCGTCT____X_XX_XX_XX_XX_X
3._JA_6_/2_[POU]
CC__AG__CCGTCT____X_XX_XX_XX_XX_X
4._JA_6_/2_[POU]
CC__AG__CCGTCT____X_XX_XX_XX_XX_X
5._JA_6_/2_[POU]
CC__AG__CCGTCT____X_XX_XX_XX_XX_X
6._JA_6_/2_[POU]
CC__AG__CCGTCT____X_XX_XX_XX_XX_X
7._JA_6_/2_[POU]
CC__AG__CCGTCT____X_XX_XX_XX_XX_X
8._JA_6_/2_[POU]
CC__AG__CCGTCT____X_XX_XX_XX_XX_X
9._JA_6_/2_[POU]
CC__AG__CCGTCT____X_XX_XX_XX_XX_X
10._JA_6_/2_[POU]
CC__AG__CCGTCT____X_XX_XX_XX_XX_X
11._JA_6_/2_[POU]
CC__AG__CCGTCT____X_XX_XX_XX_XX_X
12._JA_6_/2_[POU]
CC__AG__CCGTCT____X_XX_XX_XX_XX_X
13._JA_6_/2_[POU]
CC__AG__CCGTCT____X_XX_XX_XX_XX_X
14._JA_6_/2_[POU]
CC__AG__CCGTCT____X_XX_XX_XX_XX_X
15._JA_6_/2_[POU]
CT__AG__CCGTCT____X_XX_XX_XX_XX_X

Input profile: JA_6_/2_[POU] GC-08-091-2-14

 
Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1 > FP1
 Mars, 2018

1._JA_6_/2_[POU] GC-08-091-2-14

identical
93 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2 > FP2
 Mars, 2018

2._JA_6_/2_[POU]

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8214 3 > FP
 Dapeng Zhang, 2016

3._JA_6_/2_[POU]

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8214 2 > FP
 Dapeng Zhang, 2016

4._JA_6_/2_[POU]

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8214 1 > FP
 Dapeng Zhang, 2016

5._JA_6_/2_[POU]

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8214 13
 Dapeng Zhang, 2016

6._JA_6_/2_[POU]

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8214 11
 Dapeng Zhang, 2016

7._JA_6_/2_[POU]

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8214 9
 Dapeng Zhang, 2016

8._JA_6_/2_[POU]

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8214 7
 Dapeng Zhang, 2016

9._JA_6_/2_[POU]

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8214 5
 Dapeng Zhang, 2016

10._JA_6_/2_[POU]

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8214 4
 Dapeng Zhang, 2016

11._JA_6_/2_[POU]

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8214 4
 Dapeng Zhang, 2016

12._JA_6_/2_[POU]

identical
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8214 10
 Dapeng Zhang, 2016

13._JA_6_/2_[POU]

identical
37 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8214 15
 Dapeng Zhang, 2016

14._JA_6_/2_[POU]

97.4 %
39 shared markers

International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: Marper C 364
 Dapeng Zhang, 2016

15._JA_6_/2_[POU]

80.8 %
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8214 12
 Dapeng Zhang, 2016

 


  Key to SNP Markers

1TcSNP1075 2TcSNP534 3TcSNP591 4TcSNP42 5TcSNP418
6TcSNP702 7TcSNP1096 8TcSNP1060 9TcSNP1165 10TcSNP429
11TcSNP75 12TcSNP891 13TcSNP122 14TcSNP316 15TcSNP521
16TcSNP860 17TcSNP1062 18TcSNP836 19TcSNP878 20TcSNP929
21TcSNP413 22TcSNP653 23TcSNP1149 24TcSNP174 25TcSNP32
26TcSNP372 27TcSNP448 28TcSNP872 29TcSNP953 30TcSNP1034
31TcSNP1175 32TcSNP1111 33TcSNP577 34TcSNP90 35TcSNP998
36TcSNP150 37TcSNP28 38TcSNP751 39TcSNP1484 40TcSNP602
41TcSNP561 42TcSNP894 43TcSNP1063 44TcSNP1126 45TcSNP1270
46TcSNP606 47TcSNP329 48TcSNP689 49TcSNP944 50TcSNP1242
51TcSNP1383 52TcSNP547 53TcSNP776 54TcSNP151 55TcSNP1520
56TcSNP799 57TcSNP899 58TcSNP226 59TcSNP1439 60TcSNP1442
61TcSNP193 62TcSNP25 63TcSNP364 64TcSNP144 65TcSNP230
66TcSNP560 67TcSNP723 68TcSNP731 69TcSNP701 70TcSNP1041
71TcSNP645 72TcSNP917 73Tcm003s01336581 74Tcm003s07402719 75Tcm001s00947643
76Tcm006s26664133 77Tcm002s20575712 78TcSNP529 79TcSNP1458 80TcSNP60
81TcSNP430 82TcSNP823 83TcSNP619 84TcSNP994 85TcSNP1144
86TcSNP1156 87TcSNP469 88TcSNP999 89TcSNP242 90TcSNP1253
91TcSNP1414 92TcSNP154 93TcSNP240