SNP Profiles of LCT EEN 90   View Data

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 Key

 1 2 3 4 5 6 7 8 9 10 11 12 13 14
_Input profile
TTCCCCAAAATTCCCTAATTTTTTTTAA
1._GC-08-089-2-12
TTCCCCAAAATTCCCTAATTTTTTTTAA
2._GC-08-089-2-12
TTCCCCAAAATTCCCTAATTTTTTTTAA
3._GC-08-089-2-12
TTCCCCAAAATTCCCTAATTTTTTTTAA
4._GC-08-089-2-12
TTCCCCAAAATTCCCTAATTTTTTTTAA
5._GC-08-089-2-12
TTCCCCAAAATTCCCTAATTTTTTTTAA
6._GC-08-089-2-12
TTCCCCAAAATTCCCTAATTTTTTTTAA
7._GC-08-089-2-12
TTCCCCAAAATTCCCTAATTTTTTTTAA
8._GC-08-089-2-12
TTCCCCAAAATTCCCTAATTTTTTTTAA
9._GC-08-089-2-12
TTCCCCAAAATTCCCTAATTTTTTTTAA
10._LCT_EEN_90
TTCCCC______CCCTAA__TT______
11._LCT_EEN_90
TTCCCC______CCCTAA__TT______
12._LCT_EEN_90
TTCCCC______CCCTAA__TT______
13._LCT_EEN_90
TTCCCC______CCCTAA__TT______
14._LCT_EEN_90
TTCCCC______CCCTAA__TT______
15._LCT_EEN_90
TTCCCC______CCCTAA__TT______
16._LCT_EEN_90
TTCCCC______CCCTAA__TT______
17._LCT_EEN_90
TTCCCC______CCCTAA__TT______
18._LCT_EEN_90
TTCCCC______CCCTAA__TT______
19._LCT_EEN_90
TTCCCC______CCCTAA__TT______
20._LCT_EEN_90
TTCCCC______CCCTAA__TT______
21._LCT_EEN_90
TTCCCC______CCCTAA__TT______
22._GC-08-89-2-12
TT__CCAAAAAAGG__AAAAAAAAAAAA
 15 16 17 18 19 20 21 22 23 24 25 26 27 28
_Input profile
AAGGCCGGGGCCAACCGGAATTCCGGTT
1._GC-08-089-2-12
AAGGCCGGGGCCAACCGGAATTCCGGTT
2._GC-08-089-2-12
AAGGCCGGGGCCAACCGGAATTCCGGTT
3._GC-08-089-2-12
AAGGCCGGGGCCAACCGGAATTCCGGTT
4._GC-08-089-2-12
AAGGCCGGGGCCAACCGGAATTCCGGTT
5._GC-08-089-2-12
AAGGCCGGGGCCAACCGGAATTCCGGTT
6._GC-08-089-2-12
AAGGCCGGGGCCAACCGGAATTCCGGTT
7._GC-08-089-2-12
AAGGCCGGGGCCAACCGGAATTCCGGTT
8._GC-08-089-2-12
AAGGCCGGGGCCAACCGGAATTCCGGTT
9._GC-08-089-2-12
AAGGCCGGGGCCAACCGGAATTCCGGTT
10._LCT_EEN_90
__GG____GG________AATT__GGTT
11._LCT_EEN_90
__GG____GG________AATT__GGTT
12._LCT_EEN_90
__GG____GG________AATT__GGTT
13._LCT_EEN_90
__GG____GG________AATT__GGTT
14._LCT_EEN_90
__GG____GG________AATT__GGTT
15._LCT_EEN_90
__GG____GG________AATT__GGTT
16._LCT_EEN_90
__GG____GG________AATT__GGTT
17._LCT_EEN_90
__GG____GG________AATT__GGTT
18._LCT_EEN_90
__GG____GG________AATT__GGTT
19._LCT_EEN_90
__GG____GG________AATT__GGTT
20._LCT_EEN_90
__GGCCGGGG________AATT__GGTT
21._LCT_EEN_90
__GG____GG________AATT__GGTT
22._GC-08-89-2-12
AAGGGG__GGGGAAGGGGAATTGGCCTT
 29 30 31 32 33 34 35 36 37 38 39 40 41 42
_Input profile
TTTTGGGGCCAAGGGGTTGGCCGGGGGG
1._GC-08-089-2-12
TTTTGGGGCCAAGGGGTTGGCCGGGGGG
2._GC-08-089-2-12
TTTTGGGGCCAAGGGGTTGGCCGGGGGG
3._GC-08-089-2-12
TTTTGGGGCCAAGGGGTTGGCCGGGGGG
4._GC-08-089-2-12
TTTTGGGGCCAAGGGGTTGGCCGGGGGG
5._GC-08-089-2-12
TTTTGGGGCCAAGGGGTTGGCCGGGGGG
6._GC-08-089-2-12
TTTTGGGGCCAAGGGGTTGGCCGGGGGG
7._GC-08-089-2-12
TTTTGGGGCCAAGGGGTTGGCCGGGGGG
8._GC-08-089-2-12
TTTTGGGGCCAAGGGGTTGGCCGGGGGG
9._GC-08-089-2-12
TTTTGGGGCCAAGGGGTTGGCCGGGGGG
10._LCT_EEN_90
______GG__AAGG____GG________
11._LCT_EEN_90
______GG__AAGG____GG________
12._LCT_EEN_90
______GG__AAGG____GG________
13._LCT_EEN_90
______GG__AAGG____GG________
14._LCT_EEN_90
______GG__AAGG____GG________
15._LCT_EEN_90
______GG__AAGG____GG________
16._LCT_EEN_90
______GG__AAGG____GG________
17._LCT_EEN_90
______GG__AAGG____GG________
18._LCT_EEN_90
______GG__AAGG____GG________
19._LCT_EEN_90
______GG__AAGG____GG________
20._LCT_EEN_90
______GG__AAGG____GG________
21._LCT_EEN_90
______GG__AAGG____GG________
22._GC-08-89-2-12
AAAAGGGGCCAACCCCAAGGGGGGCCCC
 43 44 45 46 47 48 49 50 51 52 53 54 55 56
_Input profile
TTTTAGAGAACCAAGGAATTTTCCTTGG
1._GC-08-089-2-12
TTTTAGAGAACCAAGGAATTTTCCTTGG
2._GC-08-089-2-12
TTTTAGAGAACCAAGGAATTTTCCTTGG
3._GC-08-089-2-12
TTTTAGAGAACCAAGGAATTTTCCTTGG
4._GC-08-089-2-12
TTTTAGAGAACCAAGGAATTTTCCTTGG
5._GC-08-089-2-12
TTTTAGAGAACCAAGGAATTTTCCTTGG
6._GC-08-089-2-12
TTTTAGAGAACCAAGGAATTTTCCTTGG
7._GC-08-089-2-12
TTTTAGAGAACCAAGGAATTTTCCTTGG
8._GC-08-089-2-12
TTTTAGAGAACCAAGGAATTTTCCTTGG
9._GC-08-089-2-12
TTTTAGAGAACCAAGGAATTTTCCTTGG
10._LCT_EEN_90
__TT________________TTCC____
11._LCT_EEN_90
__TT________________TTCC____
12._LCT_EEN_90
__TT________________TTCC____
13._LCT_EEN_90
__TT________________TTCC____
14._LCT_EEN_90
__TT________________TTCC____
15._LCT_EEN_90
__TT________________TTCC____
16._LCT_EEN_90
__TT________________TTCC____
17._LCT_EEN_90
__TT________________TTCC____
18._LCT_EEN_90
__TT________________TTCC____
19._LCT_EEN_90
__TT________________TTCC____
20._LCT_EEN_90
__TT________________TTCC____
21._LCT_EEN_90
__TT________________TTCC____
22._GC-08-89-2-12
__AA__AGAAGG__GGAAAAAAGGAAGG
 57 58 59 60 61 62 63 64 65 66 67 68 69 70
_Input profile
GGCCTTCCCCGGCCAAGGGGAACTCCAA
1._GC-08-089-2-12
GGCCTTCCCCGGCCAAGGGGAACTCCAA
2._GC-08-089-2-12
GGCCTTCCCCGGCCAAGGGGAACTCCAA
3._GC-08-089-2-12
GGCCTTCCCCGGCCAAGGGGAACTCCAA
4._GC-08-089-2-12
GGCCTTCCCCGGCCAAGGGGAACTCCAA
5._GC-08-089-2-12
GGCCTTCCCCGGCCAAGGGGAACTCCAA
6._GC-08-089-2-12
GGCCTTCCCCGGCCAAGGGGAACTCCAA
7._GC-08-089-2-12
GGCCTTCCCCGGCCAAGGGGAACTCCAA
8._GC-08-089-2-12
GGCCTTCCCCGGCCAAGGGGAACTCCAA
9._GC-08-089-2-12
GGCCTTCCCCGGCCAAGGGGAACTCCAA
10._LCT_EEN_90
GG__TTCCCC__CCAAGGGG______AA
11._LCT_EEN_90
GG__TTCCCC__CCAAGGGG______AA
12._LCT_EEN_90
GG__TTCCCC__CCAAGGGG______AA
13._LCT_EEN_90
GG__TTCCCC__CCAAGGGG______AA
14._LCT_EEN_90
GG__TTCCCC__CCAAGGGG______AA
15._LCT_EEN_90
GG__TTCCCC__CCAAGGGG______AA
16._LCT_EEN_90
GG__TTCCCC__CCAAGGGG______AA
17._LCT_EEN_90
GG__TTCCCC__CCAAGGGG______AA
18._LCT_EEN_90
GG__TTCCCC__CCAAGGGG______AA
19._LCT_EEN_90
GG__TTCCCC__CCAAGGGG______AA
20._LCT_EEN_90
____TTCCCC__CCAAGGGG______GG
21._LCT_EEN_90
____TTCCCC__CCAAGGGG______GG
22._GC-08-89-2-12
CCGGAACCCCGGCCAACCCCAA______
 71 72 73 74 75 76 77 78 79 80 81 82 83 84
_Input profile
CCCCGGACCCAAACCCCCAACCCTTTCC
1._GC-08-089-2-12
CCCCGGACCCAAACCCCCAACCCTTTCC
2._GC-08-089-2-12
CCCCGGACCCAAACCCCCAACCCTTTCC
3._GC-08-089-2-12
CCCCGGACCCAAACCCCCAACCCTTTCC
4._GC-08-089-2-12
CCCCGGACCCAAACCCCCAACCCTTTCC
5._GC-08-089-2-12
CCCCGGACCCAAACCCCCAACCCTTTCC
6._GC-08-089-2-12
CCCCGGACCCAAACCCCCAACCCTTTCC
7._GC-08-089-2-12
CCCCGGACCCAAACCCCCAACCCTTTCC
8._GC-08-089-2-12
CCCCGGACCCAAACCCCCAACCCTTTCC
9._GC-08-089-2-12
CCCCGGACCCAAACCCCCAACCCTTTCC
10._LCT_EEN_90
CC__________ACCC______CTTTCC
11._LCT_EEN_90
CC__________ACCC______CTTTCC
12._LCT_EEN_90
CC__________ACCC______CTTTCC
13._LCT_EEN_90
CC__________ACCC______CTTTCC
14._LCT_EEN_90
CC__________ACCC______CTTTCC
15._LCT_EEN_90
CC__________ACCC______CTTTCC
16._LCT_EEN_90
CC__________ACCC______CTTTCC
17._LCT_EEN_90
CC__________ACCC______CTTTCC
18._LCT_EEN_90
CC__________ACCC______CTTTCC
19._LCT_EEN_90
CC__________ACCC______CTTTCC
20._LCT_EEN_90
CC__________ACCC______CTTT__
21._LCT_EEN_90
CC__________ACCC______CTTT__
22._GC-08-89-2-12
GGCCGGACCC__ACGGGGAACCAGAA__
 85 86 87 88 89 90 91 92       
_Input profile
CCGGCCCCGGCCAAGGX_XX_XX_XX_XX_XX_X
1._GC-08-089-2-12
CCGGCCCCGGCCAAGGX_XX_XX_XX_XX_XX_X
2._GC-08-089-2-12
CCGGCCCCGGCCAAGGX_XX_XX_XX_XX_XX_X
3._GC-08-089-2-12
CCGGCCCCGGCCAAGGX_XX_XX_XX_XX_XX_X
4._GC-08-089-2-12
CCGGCCCCGGCCAAGGX_XX_XX_XX_XX_XX_X
5._GC-08-089-2-12
CCGGCCCCGGCCAAGGX_XX_XX_XX_XX_XX_X
6._GC-08-089-2-12
CCGGCCCCGGCCAAGGX_XX_XX_XX_XX_XX_X
7._GC-08-089-2-12
CCGGCCCCGGCCAAGGX_XX_XX_XX_XX_XX_X
8._GC-08-089-2-12
CCGGCCCCGGCCAAGGX_XX_XX_XX_XX_XX_X
9._GC-08-089-2-12
CCGGCCCCGGCCAAGGX_XX_XX_XX_XX_XX_X
10._LCT_EEN_90
__GG__CCGGCC____X_XX_XX_XX_XX_XX_X
11._LCT_EEN_90
__GG__CCGGCC____X_XX_XX_XX_XX_XX_X
12._LCT_EEN_90
__GG__CCGGCC____X_XX_XX_XX_XX_XX_X
13._LCT_EEN_90
__GG__CCGGCC____X_XX_XX_XX_XX_XX_X
14._LCT_EEN_90
__GG__CCGGCC____X_XX_XX_XX_XX_XX_X
15._LCT_EEN_90
__GG__CCGGCC____X_XX_XX_XX_XX_XX_X
16._LCT_EEN_90
__GG__CCGGCC____X_XX_XX_XX_XX_XX_X
17._LCT_EEN_90
__GG__CCGGCC____X_XX_XX_XX_XX_XX_X
18._LCT_EEN_90
__GG__CCGGCC____X_XX_XX_XX_XX_XX_X
19._LCT_EEN_90
__GG__CCGGCC____X_XX_XX_XX_XX_XX_X
20._LCT_EEN_90
__GG__CCGGCC____X_XX_XX_XX_XX_XX_X
21._LCT_EEN_90
__GG__CCGGCC____X_XX_XX_XX_XX_XX_X
22._GC-08-89-2-12
GG____GGCCGGTTGGX_XX_XX_XX_XX_XX_X

Input profile: LCT_EEN_90 GC-08-089-2-12

 
Mars Center for Cocoa Science, Brazil
Location: Tree: 7
Notes: 7
 Mars, 2018

1._LCT_EEN_90 GC-08-089-2-12

identical
92 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 10
Notes: 10
 Mars, 2018

2._LCT_EEN_90 GC-08-089-2-12

identical
92 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 9
Notes: 9
 Mars, 2018

3._LCT_EEN_90 GC-08-089-2-12

identical
92 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 8
Notes: 8
 Mars, 2018

4._LCT_EEN_90 GC-08-089-2-12

identical
92 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 6
Notes: 6
 Mars, 2018

5._LCT_EEN_90 GC-08-089-2-12

identical
92 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 5
Notes: 5
 Mars, 2018

6._LCT_EEN_90 GC-08-089-2-12

identical
92 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: 4 > FP4
 Mars, 2018

7._LCT_EEN_90 GC-08-089-2-12

identical
92 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3 > FP3
 Mars, 2018

8._LCT_EEN_90 GC-08-089-2-12

identical
92 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2 > FP2
 Mars, 2018

9._LCT_EEN_90 GC-08-089-2-12

identical
92 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1 > FP1
 Mars, 2018

10._LCT_EEN_90

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8212 3 > FP
 Dapeng Zhang, 2016

11._LCT_EEN_90

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8212 5
 Dapeng Zhang, 2016

12._LCT_EEN_90

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8212 6
 Dapeng Zhang, 2016

13._LCT_EEN_90

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8212 7
 Dapeng Zhang, 2016

14._LCT_EEN_90

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8212 8
 Dapeng Zhang, 2016

15._LCT_EEN_90

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8212 9
 Dapeng Zhang, 2016

16._LCT_EEN_90

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8212 10
 Dapeng Zhang, 2016

17._LCT_EEN_90

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8212 1 > FP
 Dapeng Zhang, 2016

18._LCT_EEN_90

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8212 2 > FP
 Dapeng Zhang, 2016

19._LCT_EEN_90

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8212 4 > FP
 Dapeng Zhang, 2016

20._LCT_EEN_90

97.4 %
39 shared markers

International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: 4A A 143 T3
 Dapeng Zhang, 2014

21._LCT_EEN_90

97.3 %
37 shared markers

International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: 4A A 143 T3
 Dapeng Zhang, 2016

22._LCT_EEN_90 GC-08-89-2-12

49.4 %
79 shared markers

Mars Center for Cocoa Science, Brazil
Location: Field: Nursery, Block: -, Rep: -, Tree: 1
Notes: MCCS_Structure_refs_above_0.9membership/ CW
 Mars, 2018

 


  Key to SNP Markers

1TcSNP1075 2TcSNP534 3TcSNP591 4TcSNP42 5TcSNP418
6TcSNP1096 7TcSNP1060 8TcSNP1165 9TcSNP429 10TcSNP75
11TcSNP891 12TcSNP122 13TcSNP316 14TcSNP521 15TcSNP860
16TcSNP1062 17TcSNP836 18TcSNP878 19TcSNP929 20TcSNP413
21TcSNP653 22TcSNP1149 23TcSNP174 24TcSNP32 25TcSNP372
26TcSNP448 27TcSNP872 28TcSNP953 29TcSNP1034 30TcSNP1175
31TcSNP1111 32TcSNP577 33TcSNP90 34TcSNP998 35TcSNP150
36TcSNP28 37TcSNP751 38TcSNP1484 39TcSNP602 40TcSNP561
41TcSNP894 42TcSNP1063 43TcSNP1126 44TcSNP1270 45TcSNP606
46TcSNP329 47TcSNP689 48TcSNP944 49TcSNP1242 50TcSNP1383
51TcSNP547 52TcSNP776 53TcSNP151 54TcSNP1520 55TcSNP799
56TcSNP899 57TcSNP226 58TcSNP1439 59TcSNP1442 60TcSNP193
61TcSNP25 62TcSNP364 63TcSNP144 64TcSNP230 65TcSNP560
66TcSNP723 67TcSNP731 68TcSNP701 69TcSNP1041 70TcSNP645
71TcSNP917 72Tcm003s01336581 73Tcm003s07402719 74Tcm001s00947643 75Tcm006s26664133
76Tcm002s20575712 77TcSNP529 78TcSNP1458 79TcSNP60 80TcSNP430
81TcSNP823 82TcSNP619 83TcSNP994 84TcSNP1144 85TcSNP1156
86TcSNP469 87TcSNP999 88TcSNP242 89TcSNP1253 90TcSNP1414
91TcSNP154 92TcSNP240