SNP Profiles of LCT EEN 90   View Data

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 Key

 1 2 3 4 5 6 7 8 9 10 11 12 13 14
_Input profile
TTCCCCAAAATTTTCCCTAATTTTTTTT
1._GC-08-089-2-12
TTCCCCAAAATTTTCCCTAATTTTTTTT
2._GC-08-089-2-12
TTCCCCAAAATTTTCCCTAATTTTTTTT
3._GC-08-089-2-12
TTCCCCAAAATTTTCCCTAATTTTTTTT
4._GC-08-089-2-12
TTCCCCAAAATTTTCCCTAATTTTTTTT
5._GC-08-089-2-12
TTCCCCAAAATTTTCCCTAATTTTTTTT
6._GC-08-089-2-12
TTCCCCAAAATTTTCCCTAATTTTTTTT
7._GC-08-089-2-12
TTCCCCAAAATTTTCCCTAATTTTTTTT
8._GC-08-089-2-12
TTCCCCAAAATTTTCCCTAATTTTTTTT
9._GC-08-089-2-12
TTCCCCAAAA__TTCCCTAATTTTTTTT
10._LCT_EEN_90
TTCCCC________CCCTAA__TT____
11._LCT_EEN_90
TTCCCC________CCCTAA__TT____
12._LCT_EEN_90
TTCCCC________CCCTAA__TT____
13._LCT_EEN_90
TTCCCC________CCCTAA__TT____
14._LCT_EEN_90
TTCCCC________CCCTAA__TT____
15._LCT_EEN_90
TTCCCC________CCCTAA__TT____
16._LCT_EEN_90
TTCCCC________CCCTAA__TT____
17._LCT_EEN_90
TTCCCC________CCCTAA__TT____
18._LCT_EEN_90
TTCCCC________CCCTAA__TT____
19._LCT_EEN_90
TTCCCC________CCCTAA__TT____
20._LCT_EEN_90
TTCCCC________CCCTAA__TT____
21._LCT_EEN_90
TTCCCC________CCCTAA__TT____
22._GC-08-89-2-12
TT__CCAAAA__AAGG__AAAAAAAAAA
 15 16 17 18 19 20 21 22 23 24 25 26 27 28
_Input profile
AAAAGGCCGGGGCCAACCGGAATTCCGG
1._GC-08-089-2-12
AAAAGGCCGGGGCCAACCGGAATTCCGG
2._GC-08-089-2-12
AAAAGGCCGGGGCCAACCGGAATTCCGG
3._GC-08-089-2-12
AAAAGGCCGGGGCCAACCGGAATTCCGG
4._GC-08-089-2-12
AAAAGGCCGGGGCCAACCGGAATTCCGG
5._GC-08-089-2-12
AAAAGGCCGGGGCCAACCGGAATTCCGG
6._GC-08-089-2-12
AAAAGGCCGGGGCCAACCGGAATTCCGG
7._GC-08-089-2-12
AAAAGGCCGGGGCCAACCGGAATTCCGG
8._GC-08-089-2-12
AAAAGGCCGGGGCCAACCGGAATTCCGG
9._GC-08-089-2-12
AAAAGGCCGGGGCCAACCGGAATTCCGG
10._LCT_EEN_90
____GG____GG________AATT__GG
11._LCT_EEN_90
____GG____GG________AATT__GG
12._LCT_EEN_90
____GG____GG________AATT__GG
13._LCT_EEN_90
____GG____GG________AATT__GG
14._LCT_EEN_90
____GG____GG________AATT__GG
15._LCT_EEN_90
____GG____GG________AATT__GG
16._LCT_EEN_90
____GG____GG________AATT__GG
17._LCT_EEN_90
____GG____GG________AATT__GG
18._LCT_EEN_90
____GG____GG________AATT__GG
19._LCT_EEN_90
____GG____GG________AATT__GG
20._LCT_EEN_90
____GGCCGGGG________AATT__GG
21._LCT_EEN_90
____GG____GG________AATT__GG
22._GC-08-89-2-12
AAAAGGGG__GGGGAAGGGGAATTGGCC
 29 30 31 32 33 34 35 36 37 38 39 40 41 42
_Input profile
TTTTTTGGGGCCAAGGGGTTGGCCGGGG
1._GC-08-089-2-12
TTTTTTGGGGCCAAGGGGTTGGCCGGGG
2._GC-08-089-2-12
TTTTTTGGGGCCAAGGGGTTGGCCGGGG
3._GC-08-089-2-12
TTTTTTGGGGCCAAGGGGTTGGCCGGGG
4._GC-08-089-2-12
TTTTTTGGGGCCAAGGGGTTGGCCGGGG
5._GC-08-089-2-12
TTTTTTGGGGCCAAGGGGTTGGCCGGGG
6._GC-08-089-2-12
TTTTTTGGGGCCAAGGGGTTGGCCGGGG
7._GC-08-089-2-12
TTTTTTGGGGCCAAGGGGTTGGCCGGGG
8._GC-08-089-2-12
TTTTTTGGGGCCAAGGGGTTGGCCGGGG
9._GC-08-089-2-12
TTTTTTGGGGCCAAGGGGTTGGCCGGGG
10._LCT_EEN_90
TT______GG__AAGG____GG______
11._LCT_EEN_90
TT______GG__AAGG____GG______
12._LCT_EEN_90
TT______GG__AAGG____GG______
13._LCT_EEN_90
TT______GG__AAGG____GG______
14._LCT_EEN_90
TT______GG__AAGG____GG______
15._LCT_EEN_90
TT______GG__AAGG____GG______
16._LCT_EEN_90
TT______GG__AAGG____GG______
17._LCT_EEN_90
TT______GG__AAGG____GG______
18._LCT_EEN_90
TT______GG__AAGG____GG______
19._LCT_EEN_90
TT______GG__AAGG____GG______
20._LCT_EEN_90
TT______GG__AAGG____GG______
21._LCT_EEN_90
TT______GG__AAGG____GG______
22._GC-08-89-2-12
TTAAAAGGGGCCAACCCCAAGGGGGGCC
 43 44 45 46 47 48 49 50 51 52 53 54 55 56
_Input profile
GGTTTTAGAGAACCAAGGAATTTTCCTT
1._GC-08-089-2-12
GGTTTTAGAGAACCAAGGAATTTTCCTT
2._GC-08-089-2-12
GGTTTTAGAGAACCAAGGAATTTTCCTT
3._GC-08-089-2-12
GGTTTTAGAGAACCAAGGAATTTTCCTT
4._GC-08-089-2-12
GGTTTTAGAGAACCAAGGAATTTTCCTT
5._GC-08-089-2-12
GGTTTTAGAGAACCAAGGAATTTTCCTT
6._GC-08-089-2-12
GGTTTTAGAGAACCAAGGAATTTTCCTT
7._GC-08-089-2-12
GGTTTTAGAGAACCAAGGAATTTTCCTT
8._GC-08-089-2-12
GGTTTTAGAGAACCAAGGAATTTTCCTT
9._GC-08-089-2-12
GGTTTTAGAGAACCAAGGAATTTTCCTT
10._LCT_EEN_90
____TT________________TTCC__
11._LCT_EEN_90
____TT________________TTCC__
12._LCT_EEN_90
____TT________________TTCC__
13._LCT_EEN_90
____TT________________TTCC__
14._LCT_EEN_90
____TT________________TTCC__
15._LCT_EEN_90
____TT________________TTCC__
16._LCT_EEN_90
____TT________________TTCC__
17._LCT_EEN_90
____TT________________TTCC__
18._LCT_EEN_90
____TT________________TTCC__
19._LCT_EEN_90
____TT________________TTCC__
20._LCT_EEN_90
____TT________________TTCC__
21._LCT_EEN_90
____TT________________TTCC__
22._GC-08-89-2-12
CC__AA__AGAAGG__GGAAAAAAGGAA
 57 58 59 60 61 62 63 64 65 66 67 68 69 70
_Input profile
GGGGCCTTCCCCGGCCAAGGGGAACTCC
1._GC-08-089-2-12
GGGGCCTTCCCCGGCCAAGGGGAACTCC
2._GC-08-089-2-12
GGGGCCTTCCCCGGCCAAGGGGAACTCC
3._GC-08-089-2-12
GGGGCCTTCCCCGGCCAAGGGGAACTCC
4._GC-08-089-2-12
GGGGCCTTCCCCGGCCAAGGGGAACTCC
5._GC-08-089-2-12
GGGGCCTTCCCCGGCCAAGGGGAACTCC
6._GC-08-089-2-12
GGGGCCTTCCCCGGCCAAGGGGAACTCC
7._GC-08-089-2-12
GGGGCCTTCCCCGGCCAAGGGGAACTCC
8._GC-08-089-2-12
GGGGCCTTCCCCGGCCAAGGGGAACTCC
9._GC-08-089-2-12
GGGGCCTTCCCCGGCCAAGGGGAACTCC
10._LCT_EEN_90
__GG__TTCCCC__CCAAGGGG______
11._LCT_EEN_90
__GG__TTCCCC__CCAAGGGG______
12._LCT_EEN_90
__GG__TTCCCC__CCAAGGGG______
13._LCT_EEN_90
__GG__TTCCCC__CCAAGGGG______
14._LCT_EEN_90
__GG__TTCCCC__CCAAGGGG______
15._LCT_EEN_90
__GG__TTCCCC__CCAAGGGG______
16._LCT_EEN_90
__GG__TTCCCC__CCAAGGGG______
17._LCT_EEN_90
__GG__TTCCCC__CCAAGGGG______
18._LCT_EEN_90
__GG__TTCCCC__CCAAGGGG______
19._LCT_EEN_90
__GG__TTCCCC__CCAAGGGG______
20._LCT_EEN_90
______TTCCCC__CCAAGGGG______
21._LCT_EEN_90
______TTCCCC__CCAAGGGG______
22._GC-08-89-2-12
GGCCGGAACCCCGGCCAACCCCAA____
 71 72 73 74 75 76 77 78 79 80 81 82 83 84
_Input profile
AACCCCGGACCCAAACCCCCAACCCTTT
1._GC-08-089-2-12
AACCCCGGACCCAAACCCCCAACCCTTT
2._GC-08-089-2-12
AACCCCGGACCCAAACCCCCAACCCTTT
3._GC-08-089-2-12
AACCCCGGACCCAAACCCCCAACCCTTT
4._GC-08-089-2-12
AACCCCGGACCCAAACCCCCAACCCTTT
5._GC-08-089-2-12
AACCCCGGACCCAAACCCCCAACCCTTT
6._GC-08-089-2-12
AACCCCGGACCCAAACCCCCAACCCTTT
7._GC-08-089-2-12
AACCCCGGACCCAAACCCCCAACCCTTT
8._GC-08-089-2-12
AACCCCGGACCCAAACCCCCAACCCTTT
9._GC-08-089-2-12
AACCCCGGACCCAAACCCCCAACCCTTT
10._LCT_EEN_90
AACC__________ACCC______CTTT
11._LCT_EEN_90
AACC__________ACCC______CTTT
12._LCT_EEN_90
AACC__________ACCC______CTTT
13._LCT_EEN_90
AACC__________ACCC______CTTT
14._LCT_EEN_90
AACC__________ACCC______CTTT
15._LCT_EEN_90
AACC__________ACCC______CTTT
16._LCT_EEN_90
AACC__________ACCC______CTTT
17._LCT_EEN_90
AACC__________ACCC______CTTT
18._LCT_EEN_90
AACC__________ACCC______CTTT
19._LCT_EEN_90
AACC__________ACCC______CTTT
20._LCT_EEN_90
GGCC__________ACCC______CTTT
21._LCT_EEN_90
GGCC__________ACCC______CTTT
22._GC-08-89-2-12
__GGCCGGACCC__ACGGGGAACCAGAA
 85 86 87 88 89 90 91 92 93      
_Input profile
CCCCGGCCCCGGCCAAGGX_XX_XX_XX_XX_X
1._GC-08-089-2-12
CCCCGGCCCCGGCCAAGGX_XX_XX_XX_XX_X
2._GC-08-089-2-12
CCCCGGCCCCGGCCAAGGX_XX_XX_XX_XX_X
3._GC-08-089-2-12
CCCCGGCCCCGGCCAAGGX_XX_XX_XX_XX_X
4._GC-08-089-2-12
CCCCGGCCCCGGCCAAGGX_XX_XX_XX_XX_X
5._GC-08-089-2-12
CCCCGGCCCCGGCCAAGGX_XX_XX_XX_XX_X
6._GC-08-089-2-12
CCCCGGCCCCGGCCAAGGX_XX_XX_XX_XX_X
7._GC-08-089-2-12
CCCCGGCCCCGGCCAAGGX_XX_XX_XX_XX_X
8._GC-08-089-2-12
CCCCGGCCCCGGCCAAGGX_XX_XX_XX_XX_X
9._GC-08-089-2-12
CCCCGGCCCCGGCCAAGGX_XX_XX_XX_XX_X
10._LCT_EEN_90
CC__GG__CCGGCC____X_XX_XX_XX_XX_X
11._LCT_EEN_90
CC__GG__CCGGCC____X_XX_XX_XX_XX_X
12._LCT_EEN_90
CC__GG__CCGGCC____X_XX_XX_XX_XX_X
13._LCT_EEN_90
CC__GG__CCGGCC____X_XX_XX_XX_XX_X
14._LCT_EEN_90
CC__GG__CCGGCC____X_XX_XX_XX_XX_X
15._LCT_EEN_90
CC__GG__CCGGCC____X_XX_XX_XX_XX_X
16._LCT_EEN_90
CC__GG__CCGGCC____X_XX_XX_XX_XX_X
17._LCT_EEN_90
CC__GG__CCGGCC____X_XX_XX_XX_XX_X
18._LCT_EEN_90
CC__GG__CCGGCC____X_XX_XX_XX_XX_X
19._LCT_EEN_90
CC__GG__CCGGCC____X_XX_XX_XX_XX_X
20._LCT_EEN_90
____GG__CCGGCC____X_XX_XX_XX_XX_X
21._LCT_EEN_90
____GG__CCGGCC____X_XX_XX_XX_XX_X
22._GC-08-89-2-12
__GG____GGCCGGTTGGX_XX_XX_XX_XX_X

Input profile: LCT_EEN_90 GC-08-089-2-12

 
Mars Center for Cocoa Science, Brazil
Location: Tree: 5
Notes: 5
 Mars, 2018

1._LCT_EEN_90 GC-08-089-2-12

identical
93 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 10
Notes: 10
 Mars, 2018

2._LCT_EEN_90 GC-08-089-2-12

identical
93 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 9
Notes: 9
 Mars, 2018

3._LCT_EEN_90 GC-08-089-2-12

identical
93 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 8
Notes: 8
 Mars, 2018

4._LCT_EEN_90 GC-08-089-2-12

identical
93 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 6
Notes: 6
 Mars, 2018

5._LCT_EEN_90 GC-08-089-2-12

identical
93 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: 4 > FP4
 Mars, 2018

6._LCT_EEN_90 GC-08-089-2-12

identical
93 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3 > FP3
 Mars, 2018

7._LCT_EEN_90 GC-08-089-2-12

identical
93 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2 > FP2
 Mars, 2018

8._LCT_EEN_90 GC-08-089-2-12

identical
93 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1 > FP1
 Mars, 2018

9._LCT_EEN_90 GC-08-089-2-12

identical
92 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 7
Notes: 7
 Mars, 2018

10._LCT_EEN_90

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8212 3 > FP
 Dapeng Zhang, 2016

11._LCT_EEN_90

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8212 5
 Dapeng Zhang, 2016

12._LCT_EEN_90

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8212 6
 Dapeng Zhang, 2016

13._LCT_EEN_90

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8212 7
 Dapeng Zhang, 2016

14._LCT_EEN_90

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8212 8
 Dapeng Zhang, 2016

15._LCT_EEN_90

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8212 9
 Dapeng Zhang, 2016

16._LCT_EEN_90

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8212 10
 Dapeng Zhang, 2016

17._LCT_EEN_90

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8212 1 > FP
 Dapeng Zhang, 2016

18._LCT_EEN_90

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8212 2 > FP
 Dapeng Zhang, 2016

19._LCT_EEN_90

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8212 4 > FP
 Dapeng Zhang, 2016

20._LCT_EEN_90

97.4 %
39 shared markers

International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: 4A A 143 T3
 Dapeng Zhang, 2014

21._LCT_EEN_90

97.3 %
37 shared markers

International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: 4A A 143 T3
 Dapeng Zhang, 2016

22._LCT_EEN_90 GC-08-89-2-12

49.4 %
79 shared markers

Mars Center for Cocoa Science, Brazil
Location: Field: Nursery, Block: -, Rep: -, Tree: 1
Notes: MCCS_Structure_refs_above_0.9membership/ CW
 Mars, 2018

 


  Key to SNP Markers

1TcSNP1075 2TcSNP534 3TcSNP591 4TcSNP42 5TcSNP418
6TcSNP702 7TcSNP1096 8TcSNP1060 9TcSNP1165 10TcSNP429
11TcSNP75 12TcSNP891 13TcSNP122 14TcSNP316 15TcSNP521
16TcSNP860 17TcSNP1062 18TcSNP836 19TcSNP878 20TcSNP929
21TcSNP413 22TcSNP653 23TcSNP1149 24TcSNP174 25TcSNP32
26TcSNP372 27TcSNP448 28TcSNP872 29TcSNP953 30TcSNP1034
31TcSNP1175 32TcSNP1111 33TcSNP577 34TcSNP90 35TcSNP998
36TcSNP150 37TcSNP28 38TcSNP751 39TcSNP1484 40TcSNP602
41TcSNP561 42TcSNP894 43TcSNP1063 44TcSNP1126 45TcSNP1270
46TcSNP606 47TcSNP329 48TcSNP689 49TcSNP944 50TcSNP1242
51TcSNP1383 52TcSNP547 53TcSNP776 54TcSNP151 55TcSNP1520
56TcSNP799 57TcSNP899 58TcSNP226 59TcSNP1439 60TcSNP1442
61TcSNP193 62TcSNP25 63TcSNP364 64TcSNP144 65TcSNP230
66TcSNP560 67TcSNP723 68TcSNP731 69TcSNP701 70TcSNP1041
71TcSNP645 72TcSNP917 73Tcm003s01336581 74Tcm003s07402719 75Tcm001s00947643
76Tcm006s26664133 77Tcm002s20575712 78TcSNP529 79TcSNP1458 80TcSNP60
81TcSNP430 82TcSNP823 83TcSNP619 84TcSNP994 85TcSNP1144
86TcSNP1156 87TcSNP469 88TcSNP999 89TcSNP242 90TcSNP1253
91TcSNP1414 92TcSNP154 93TcSNP240