SNP Profiles of POUND-18   View Data

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 Key

 1 2 3 4 5 6 7 8 9 10 11 12 13 14
_Input profile
AACCCTACGGAGCCCCCCCCGGTTCTTT
1._GC-08-064-1-86
AACCCTACGGAGCCCCCCCCGGTTCTTT
2._GC-08-064-1-86
AACCCTACGGAGCCCCCCCCGGTTCTTT
3._GC-08-064-1-86
AACCCTACGGAGCCCCCCCCGGTTCTTT
4._GC-08-064-1-86
AACCCTACGGAGCCCCCCCCGGTTCTTT
5._GC-08-064-1-86
AACCCTACGGAGCCCCCCCCGGTTCTTT
6._GC-08-064-1-86
AACCCTACGGAGCCCCCCCCGGTTCTTT
7._GC-08-064-1-86
AACCCTACGGAGCCCCCCCCGG__CTTT
8._GC-08-064-1-86
AACCCTACGGAGCCCCCCCCGGTTCTTT
9._POUND_18
AACCCTAC________CCCCGG__CT__
10._POUND_18
AACCCTAC________CCCCGG__CT__
11._POUND_18
AACCCTAC________CCCCGG__CT__
12._POUND_18
AACCCTAC________CCCCGG__CT__
13._POUND_18
AACCCTAC________CCCCGG__CT__
14._POUND_18
AACCCTAC________CCCCGG__CT__
15._POUND_18
AACCCTAC________CCCCGG__CT__
16._POUND_18
AACCCTAC________CCCCGG__CT__
17._POUND_18
AACCCTAC________CCCCGG__CT__
18._POUND_18
AACCCTAC________CCCCGG__CT__
19._RUQ_874
AACCCTAC________CCCCAG__CT__
20._RUQ_874
____CTAC____TT__CC____TTTT__
21._RUQ_874B
______AC____TT______________
22._RUQ_874
______AC____TT______________
23._GC-08-64-1-86
AACC__ACGGAG__GGGG__GGAAAGAA
24._RUQ_874
AACC__ACGGAG__GGGG__GGAAAGAA
 15 16 17 18 19 20 21 22 23 24 25 26 27 28
_Input profile
AAAAGGCGCCGGCCAATTGGTTAACCCC
1._GC-08-064-1-86
AAAAGGCGCCGGCCAATTGGTTAACCCC
2._GC-08-064-1-86
AAAAGGCGCCGGCCAATTGGTTAACCCC
3._GC-08-064-1-86
AAAAGGCGCCGGCCAATTGGTTAACCCC
4._GC-08-064-1-86
AAAAGGCGCCGGCCAATTGGTTAACCCC
5._GC-08-064-1-86
AAAAGGCGCCGGCCAATTGGTTAACCCC
6._GC-08-064-1-86
AAAAGGCGCCGGCCAATTGGTTAACCCC
7._GC-08-064-1-86
AAAAGGCGCCGGCCAATTGGTTAACCCC
8._GC-08-064-1-86
AA__GGCGCCGGCCAATTGGTTAACCCC
9._POUND_18
____GG____GG________TTAA__CC
10._POUND_18
____GG____GG________TTAA__CC
11._POUND_18
____GG____GG________TTAA__CC
12._POUND_18
____GG____GG________TTAA__CC
13._POUND_18
____GG____GG________TTAA__CC
14._POUND_18
____GG____GG________TTAA__CC
15._POUND_18
____GG____GG________TTAA__CC
16._POUND_18
____GG____GG________TTAA__CC
17._POUND_18
____GG____GG________TTAA__CC
18._POUND_18
____GG____GG________TTAA__CC
19._RUQ_874
____GG____GG________TTAA__CC
20._RUQ_874
________CC________GG__AACCCC
21._RUQ_874B
____GGCT__________________CC
22._RUQ_874
____GGCT__________________CC
23._GC-08-64-1-86
TTAAGGCG__GGGGAAAAGGTTAAGGGG
24._RUQ_874
TTAAGGCG__GGGGAAAAGGTTAAGGGG
 29 30 31 32 33 34 35 36 37 38 39 40 41 42
_Input profile
AATTGGGGGGCCAAGTGGTTAACCGGCC
1._GC-08-064-1-86
AATTGGGGGGCCAAGTGGTTAACCGGCC
2._GC-08-064-1-86
AATTGGGGGGCCAAGTGGTTAACCGGCC
3._GC-08-064-1-86
AATTGGGGGGCCAAGTGGTTAACCGGCC
4._GC-08-064-1-86
AATTGGGGGGCCAAGTGGTTAACCGGCC
5._GC-08-064-1-86
AATTGGGGGGCCAAGTGGTTAACCGGCC
6._GC-08-064-1-86
AATTGGGGGGCCAAGTGGTTAACCGGCC
7._GC-08-064-1-86
AATTGGGGGGCCAAGTGGTTAACCGGCC
8._GC-08-064-1-86
AATTGGGGGGCCAAGTGGTTAACCGGCC
9._POUND_18
AA______GG__AAGT____AA______
10._POUND_18
AA______GG__AAGT____AA______
11._POUND_18
AA______GG__AAGT____AA______
12._POUND_18
AA______GG__AAGT____AA______
13._POUND_18
AA______GG__AAGT____AA______
14._POUND_18
AA______GG__AAGT____AA______
15._POUND_18
AA______GG__AAGT____AA______
16._POUND_18
AA______GG__AAGT____AA______
17._POUND_18
AA______GG__AAGT____AA______
18._POUND_18
AA______GG__AAGT____AA______
19._RUQ_874
AA______GG__AAGT____AG______
20._RUQ_874
______GGGGCCAAGT____AACC____
21._RUQ_874B
________GG__AA________CC____
22._RUQ_874
________GG__AA________CC____
23._GC-08-64-1-86
AAAACCGGGGCCAAACCCAAAAGGGGGG
24._RUQ_874
AAAACCGGGGCCAAACCCAAAAGGGGGG
 43 44 45 46 47 48 49 50 51 52 53 54 55 56
_Input profile
GGTTTTAGAGAACCCCGGGGGTTTCTCC
1._GC-08-064-1-86
GGTTTTAGAGAACCCCGGGGGTTTCTCC
2._GC-08-064-1-86
GGTTTTAGAGAACCCCGGGGGTTTCTCC
3._GC-08-064-1-86
GGTTTTAGAGAACCCCGGGGGTTTCTCC
4._GC-08-064-1-86
GGTTTTAGAGAACCCCGGGGGTTTCTCC
5._GC-08-064-1-86
GGTTTTAGAGAACCCCGGGGGTTTCTCC
6._GC-08-064-1-86
GGTTTTAGAGAACCCCGGGGGTTTCTCC
7._GC-08-064-1-86
GGTTTTAGAGAACCCCGGGGGTTTCTCC
8._GC-08-064-1-86
GGTTTTAGAGAACCCCGGGGGTTTCTCC
9._POUND_18
____TT__________________CTCC
10._POUND_18
____TT__________________CTCC
11._POUND_18
____TT__________________CTCC
12._POUND_18
____TT__________________CTCC
13._POUND_18
____TT__________________CTCC
14._POUND_18
____TT__________________CTCC
15._POUND_18
____TT__________________CTCC
16._POUND_18
____TT__________________CTCC
17._POUND_18
____TT__________________CTCC
18._POUND_18
____TT__________________CTCC
19._RUQ_874
____TT__________________CTCC
20._RUQ_874
GGTT____AG____________TTCT__
21._RUQ_874B
________AG__________________
22._RUQ_874
________AG__________________
23._GC-08-64-1-86
CC__AA__AGAAGG__GGGGACAAAGGG
24._RUQ_874
CC__AA__AGAAGG__GGGGACAAAGGG
 57 58 59 60 61 62 63 64 65 66 67 68 69 70
_Input profile
TTGGCGCCTTCCGGGGACAAGTGGGGTT
1._GC-08-064-1-86
TTGGCGCCTTCCGGGGACAAGTGGGGTT
2._GC-08-064-1-86
TTGGCGCCTTCCGGGGACAAGTGGGGTT
3._GC-08-064-1-86
TTGGCGCCTTCCGGGGACAAGTGGGGTT
4._GC-08-064-1-86
TTGGCGCCTTCCGGGGACAAGTGGGGTT
5._GC-08-064-1-86
TTGGCGCCTTCCGGGGACAAGTGGGGTT
6._GC-08-064-1-86
TTGGCGCCTTCCGGGGACAAGTGGGGTT
7._GC-08-064-1-86
TTGGCGCCTTCCGGGGACAAGTGGGGTT
8._GC-08-064-1-86
TTGGCGCCTTCCGGGGACAAGTGGGGTT
9._POUND_18
____CG__TTCCGG__ACAAGTGG____
10._POUND_18
____CG__TTCCGG__ACAAGTGG____
11._POUND_18
____CG__TTCCGG__ACAAGTGG____
12._POUND_18
____CG__TTCCGG__ACAAGTGG____
13._POUND_18
____CG__TTCCGG__ACAAGTGG____
14._POUND_18
____CG__TTCCGG__ACAAGTGG____
15._POUND_18
____CG__TTCCGG__ACAAGTGG____
16._POUND_18
____CG__TTCCGG__ACAAGTGG____
17._POUND_18
____CG__TTCCGG__ACAAGTGG____
18._POUND_18
________TTCCGG__ACAAGTGG____
19._RUQ_874
____CG__TTCCGG__ACAAGTGG____
20._RUQ_874
TT__CGCCTTCC__GGACAAGTGGGG__
21._RUQ_874B
__GG____________ACAA__GGGG__
22._RUQ_874
__GG____________ACAA__GGGG__
23._GC-08-64-1-86
AAGGCGGGAACCGGGGACAAACCCGG__
24._RUQ_874
AAGGCGGGAACCGGGGACAAACCCGG__
 71 72 73 74 75 76 77 78 79 80 81 82 83 84
_Input profile
CGAACCAAAACCCCAGACCGCCAAACCC
1._GC-08-064-1-86
CGAACCAAAACCCCAGACCGCCAAACCC
2._GC-08-064-1-86
CGAACCAAAACCCCAGACCGCCAAACCC
3._GC-08-064-1-86
CGAACCAAAACCCCAGACCGCCAAACCC
4._GC-08-064-1-86
CGAACCAAAACCCCAGACCGCCAAACCC
5._GC-08-064-1-86
CGAACCAAAACCCCAGACCGCCAAACCC
6._GC-08-064-1-86
CGAACCAAAACCCCAGACCGCCAAACCC
7._GC-08-064-1-86
CGAACCAAAACCCCAGACCGCCAAACCC
8._GC-08-064-1-86
CGAACCAAAACCCCAGACCGCCAAACCC
9._POUND_18
__AACC__________ACCG______CC
10._POUND_18
__AACC__________ACCG______CC
11._POUND_18
__AACC__________ACCG______CC
12._POUND_18
__AACC__________ACCG______CC
13._POUND_18
__AACC__________ACCG______CC
14._POUND_18
__AACC__________ACCG______CC
15._POUND_18
__AACC__________ACCG______CC
16._POUND_18
__AACC__________ACCG______CC
17._POUND_18
__AACC__________ACCG______CC
18._POUND_18
__AACC__________ACCG______CC
19._RUQ_874
__AACC__________ACCG______CC
20._RUQ_874
________________ACCG____ACCC
21._RUQ_874B
__AA____________ACCG____AC__
22._RUQ_874
__AA____________ACCG____AC__
23._GC-08-64-1-86
____GGAAAACCCC__ACCGGGAAACGG
24._RUQ_874
____GGAAAACCCC__ACCGGGAAACGG
 85 86 87 88 89 90 91 92 93 94     
_Input profile
TTCCCTAACCCTGTCTTTGGX_XX_XX_XX_X
1._GC-08-064-1-86
TTCCCTAACCCTGTCTTTGGX_XX_XX_XX_X
2._GC-08-064-1-86
TTCCCTAACCCTGTCTTTGGX_XX_XX_XX_X
3._GC-08-064-1-86
TTCCCTAACCCTGTCTTTGGX_XX_XX_XX_X
4._GC-08-064-1-86
TTCCCTAACCCTGTCTTTGGX_XX_XX_XX_X
5._GC-08-064-1-86
TTCCCTAACCCTGTCTTTGGX_XX_XX_XX_X
6._GC-08-064-1-86
TTCCCTAACCCTGTCTTTGGX_XX_XX_XX_X
7._GC-08-064-1-86
TTCCCTAACCCTGTCTTTGGX_XX_XX_XX_X
8._GC-08-064-1-86
TTCCCTAACCCTGTCTTTGGX_XX_XX_XX_X
9._POUND_18
TTCC__AA__CTGTCT____X_XX_XX_XX_X
10._POUND_18
TTCC__AA__CTGTCT____X_XX_XX_XX_X
11._POUND_18
TTCC__AA__CTGTCT____X_XX_XX_XX_X
12._POUND_18
TTCC__AA__CTGTCT____X_XX_XX_XX_X
13._POUND_18
TTCC__AA__CTGTCT____X_XX_XX_XX_X
14._POUND_18
TTCC__AA__CTGTCT____X_XX_XX_XX_X
15._POUND_18
TTCC__AA__CTGTCT____X_XX_XX_XX_X
16._POUND_18
TTCC__AA__CTGTCT____X_XX_XX_XX_X
17._POUND_18
TTCC__AA__CTGTCT____X_XX_XX_XX_X
18._POUND_18
TTCC__AA__CTGTCT____X_XX_XX_XX_X
19._RUQ_874
TTCC__AA__CTGTCT____X_XX_XX_XX_X
20._RUQ_874
______AACCCTGT______X_XX_XX_XX_X
21._RUQ_874B
__CC____CC__GT______X_XX_XX_XX_X
22._RUQ_874
__CC____CC__GT______X_XX_XX_XX_X
23._GC-08-64-1-86
AA__AG____AGACAGAAGGX_XX_XX_XX_X
24._RUQ_874
AA__AG____AGACAGAAGGX_XX_XX_XX_X

Input profile: POUND_18 GC-08-064-1-86

 
Mars Center for Cocoa Science, Brazil
Location: Tree: 6
Notes: 6
 Mars, 2018

1._POUND_18 GC-08-064-1-86

identical
94 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3
 Mars, 2018

2._POUND_18 GC-08-064-1-86

identical
94 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2 > FP2
 Mars, 2018

3._POUND_18 GC-08-064-1-86

identical
94 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1
 Mars, 2018

4._POUND_18 GC-08-064-1-86

identical
94 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 9
Notes: 9
 Mars, 2018

5._POUND_18 GC-08-064-1-86

identical
94 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 11
Notes: 11
 Mars, 2018

6._POUND_18 GC-08-064-1-86

identical
94 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 12
Notes: 12
 Mars, 2018

7._POUND_18 GC-08-064-1-86

identical
93 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: 4
 Mars, 2018

8._POUND_18 GC-08-064-1-86

identical
93 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 7
Notes: 7
 Mars, 2018

9._POUND_18

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8186 4
 Dapeng Zhang, 2016

10._POUND_18

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8186 2 > FP
 Dapeng Zhang, 2016

11._POUND_18

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8186 12
 Dapeng Zhang, 2016

12._POUND_18

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8186 11
 Dapeng Zhang, 2016

13._POUND_18

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8186 9
 Dapeng Zhang, 2016

14._POUND_18

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8186 7
 Dapeng Zhang, 2016

15._POUND_18

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8186 6
 Dapeng Zhang, 2016

16._POUND_18

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8186 3
 Dapeng Zhang, 2016

17._POUND_18

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8186 1
 Dapeng Zhang, 2016

18._POUND_18

identical
39 shared markers

International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: 6B F447 T2
 Dapeng Zhang, 2016

19._POUND_18 RUQ_874

97.5 %
40 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2016

20._POUND_18 RUQ_874

96.4 %
42 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

21._POUND_18 RUQ_874B

90.5 %
21 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Lambert Motilal, 2023

22._POUND_18 RUQ_874

90.5 %
21 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Lambert Motilal, 2023
Population Assignment: 

23._POUND_18 GC-08-64-1-86

52.5 %
80 shared markers

Mars Center for Cocoa Science, Brazil
Location: Field: 8, Block: 1, Rep: 86, Tree: 1
Notes: MCCS_Structure_refs_above_0.9membership
 Mars, 2018

24._POUND_18 RUQ_874

52.5 %
80 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
Notes: Reading_Collection
 Mars, 2018

 


  Key to SNP Markers

1TcSNP1075 2TcSNP1350 3TcSNP534 4TcSNP591 5TcSNP42
6TcSNP418 7TcSNP702 8TcSNP1096 9TcSNP1060 10TcSNP1165
11TcSNP429 12TcSNP75 13TcSNP891 14TcSNP122 15TcSNP316
16TcSNP521 17TcSNP1062 18TcSNP836 19TcSNP878 20TcSNP929
21TcSNP413 22TcSNP653 23TcSNP1149 24TcSNP174 25TcSNP32
26TcSNP372 27TcSNP448 28TcSNP872 29TcSNP953 30TcSNP1034
31TcSNP1175 32TcSNP1111 33TcSNP577 34TcSNP90 35TcSNP998
36TcSNP150 37TcSNP28 38TcSNP751 39TcSNP1484 40TcSNP602
41TcSNP561 42TcSNP894 43TcSNP1063 44TcSNP1126 45TcSNP1270
46TcSNP606 47TcSNP329 48TcSNP689 49TcSNP944 50TcSNP1242
51TcSNP1383 52TcSNP547 53TcSNP776 54TcSNP1309 55TcSNP151
56TcSNP1520 57TcSNP799 58TcSNP899 59TcSNP226 60TcSNP1439
61TcSNP1442 62TcSNP193 63TcSNP25 64TcSNP364 65TcSNP144
66TcSNP230 67TcSNP560 68TcSNP723 69TcSNP731 70TcSNP701
71TcSNP1041 72TcSNP645 73TcSNP917 74Tcm003s01336581 75Tcm003s07402719
76Tcm001s00947643 77Tcm006s26664133 78Tcm002s20575712 79TcSNP529 80TcSNP1458
81TcSNP60 82TcSNP430 83TcSNP823 84TcSNP619 85TcSNP994
86TcSNP1144 87TcSNP1156 88TcSNP469 89TcSNP999 90TcSNP242
91TcSNP1253 92TcSNP1414 93TcSNP154 94TcSNP240