SNP Profiles of MO 9   View Data

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 Key

 1 2 3 4 5 6 7 8 9 10 11 12 13 14
_Input profile
AAACCTACGGAGCTCTCTCTAGCTCTCT
1._DOM_5___
AAACCTACGGAGCTCTCTCTAGCTCTCT
2._DOM_5___
AAACCTACGGAGCTCTCTCTAGCTCTCT
3._DOM_5___
AAACCTACGGAGCTCTCTCTAGCTCTCT
4._DOM_5___
AAACCTACGGAGCTCTCTCTAGCTCTCT
5._DOM_5___
AAACCTAC________CTCTAG__CT__
6._DOM_5___
AAACCTAC________CTCTAG__CT__
7._DOM_5___
AAACCTAC________CTCTAG__CT__
8._DOM_5___
AAACCTAC________CTCTAG__CT__
9._DOM_5___
AAACCTAC________CTCTAG__CT__
10._DOM_5___
AAAATTCC________CCCCGG__CC__
 15 16 17 18 19 20 21 22 23 24 25 26 27 28
_Input profile
ATACAAAGCGCCCGCTAATTGGATATGG
1._DOM_5___
ATACAAAGCGCCCGCTAATTGGATATGG
2._DOM_5___
ATACAAAGCGCCCGCTAATTGGATATGG
3._DOM_5___
ATACAAAGCGCCCGCTAATTGGATATGG
4._DOM_5___
ATACAAAGCGCCCGCTAATTGGATATGG
5._DOM_5___
______AG____CG________ATAT__
6._DOM_5___
______AG____CG________ATAT__
7._DOM_5___
______AG____CG________ATAT__
8._DOM_5___
______AG____CG________ATAT__
9._DOM_5___
______AG____CG________ATAT__
10._DOM_5___
______AA____GG________ATAT__
 29 30 31 32 33 34 35 36 37 38 39 40 41 42
_Input profile
CCATTTGTAGCGACAGGGGTGTAACCAG
1._DOM_5___
CCATTTGTAGCGACAGGGGTGTAACCAG
2._DOM_5___
CCATTTGTAGCGACAGGGGTGTAACCAG
3._DOM_5___
CCATTTGTAGCGACAGGGGTGTAACCAG
4._DOM_5___
CCATTTGTAGCGACAGGGGTGTAACCAG
5._DOM_5___
CCAT______CG__AGGG____AA____
6._DOM_5___
CCAT______CG__AGGG____AA____
7._DOM_5___
CCAT______CG__AGGG____AA____
8._DOM_5___
CCAT______CG__AGGG____AA____
9._DOM_5___
CCAT______CG__AGGG____AA____
10._DOM_5___
GGAA______CG__AAGG____AA____
 43 44 45 46 47 48 49 50 51 52 53 54 55 56
_Input profile
CCGGATCCAGAAAACTACAGAGGGCTCT
1._DOM_5___
CCGGATCCAGAAAACTACAGAGGGCTCT
2._DOM_5___
CCGGATCCAGAAAACTACAGAGGGCTCT
3._DOM_5___
CCGGATCCAGAAAACTACAGAGGGCTCT
4._DOM_5___
CCGGATCCAGAAAACTACAGAGGGCTCT
5._DOM_5___
______CC________________CTCT
6._DOM_5___
______CC________________CTCT
7._DOM_5___
______CC________________CTCT
8._DOM_5___
______CC________________CTCT
9._DOM_5___
______CC________________CTCT
10._DOM_5___
______CC________________CTTT
 57 58 59 60 61 62 63 64 65 66 67 68 69 70
_Input profile
TTAGCGCTTTACCGAGAAAGGTGTAGCT
1._DOM_5___
TTAGCGCTTTACCGAGAAAGGTGTAGCT
2._DOM_5___
TTAGCGCTTTACCGAGAAAGGTGTAGCT
3._DOM_5___
TTAGCGCTTTACCGAGAAAGGTGTAGCT
4._DOM_5___
TTAGCGCTTTACCGAGAAAGGTGTAGCT
5._DOM_5___
____CG__TTACCG__AAAGGTGT____
6._DOM_5___
____CG__TTACCG__AAAGGTGT____
7._DOM_5___
____CG__TTACCG__AAAGGTGT____
8._DOM_5___
____CG__TTACCG__AAAGGTGT____
9._DOM_5___
____CG__TTACCG__AAAGGTGT____
10._DOM_5___
____CC__CCAAGG__CCAAGTGG____
 71 72 73 74 75 76 77 78 79 80 81 82 83 84
_Input profile
CCAACTACGGCCACAAACCGCTAAACTT
1._DOM_5___
CCAACTACGGCCACAAACCGCTAAACTT
2._DOM_5___
CCAACTACGGCCACAAACCGCTAAACTT
3._DOM_5___
CCAACTACGGCCACAAACCGCTAAACTT
4._DOM_5___
CCAACTACGGCCACAAACCGCTAAACTT
5._DOM_5___
__AACT__________ACCG______TT
6._DOM_5___
__AACT__________ACCG______TT
7._DOM_5___
__AACT__________ACCG______TT
8._DOM_5___
__AACT__________ACCG______TT
9._DOM_5___
__AACT__________ACCG______TT
10._DOM_5___
__GGTT__________CCGG______TT
 85 86 87 88 89 90 91 92 93 94     
_Input profile
CTCTCTAGCCCTGTCTATGGX_XX_XX_XX_X
1._DOM_5___
CTCTCTAGCCCTGTCTATGGX_XX_XX_XX_X
2._DOM_5___
CTCTCTAGCCCTGTCTATGGX_XX_XX_XX_X
3._DOM_5___
CTCTCTAGCCCTGTCTATGGX_XX_XX_XX_X
4._DOM_5___
CTCTCTAGCCCTGTCTATGGX_XX_XX_XX_X
5._DOM_5___
CTCT__AG__CTGTCT____X_XX_XX_XX_X
6._DOM_5___
CTCT__AG__CTGTCT____X_XX_XX_XX_X
7._DOM_5___
CTCT__AG__CTGTCT____X_XX_XX_XX_X
8._DOM_5___
CTCT__AG__CTGTCT____X_XX_XX_XX_X
9._DOM_5___
CTCT__AG__CTGTCT____X_XX_XX_XX_X
10._DOM_5___
TTTT__AA__CCGTTT____X_XX_XX_XX_X

Input profile: DOM_5 GC-08-053-1-64

 
Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1
 Mars, 2018

1._DOM_5 GC-08-053-1-64

identical
94 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2
 Mars, 2018

2._DOM_5 GC-08-053-1-64

identical
94 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3
 Mars, 2018

3._DOM_5 GC-08-053-1-64

identical
94 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: 4
 Mars, 2018

4._DOM_5 GC-08-053-1-64

identical
94 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 6
Notes: Dead
 Mars, 2018

5._DOM_5

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8164 6
 Dapeng Zhang, 2016

6._DOM_5

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8164 4
 Dapeng Zhang, 2016

7._DOM_5

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8164 3
 Dapeng Zhang, 2016

8._DOM_5

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8164 2
 Dapeng Zhang, 2016

9._DOM_5

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8164 1
 Dapeng Zhang, 2016

10._DOM_5

58.8 %
40 shared markers

International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: 4A B241 T1
 Dapeng Zhang, 2016

 


  Key to SNP Markers

1TcSNP1075 2TcSNP1350 3TcSNP534 4TcSNP591 5TcSNP42
6TcSNP418 7TcSNP702 8TcSNP1096 9TcSNP1060 10TcSNP1165
11TcSNP429 12TcSNP75 13TcSNP891 14TcSNP122 15TcSNP316
16TcSNP521 17TcSNP860 18TcSNP1062 19TcSNP836 20TcSNP878
21TcSNP929 22TcSNP413 23TcSNP653 24TcSNP1149 25TcSNP174
26TcSNP32 27TcSNP372 28TcSNP448 29TcSNP872 30TcSNP953
31TcSNP1034 32TcSNP1175 33TcSNP1111 34TcSNP577 35TcSNP90
36TcSNP998 37TcSNP150 38TcSNP28 39TcSNP751 40TcSNP1484
41TcSNP602 42TcSNP561 43TcSNP894 44TcSNP1063 45TcSNP1126
46TcSNP1270 47TcSNP606 48TcSNP329 49TcSNP689 50TcSNP944
51TcSNP1242 52TcSNP1383 53TcSNP547 54TcSNP776 55TcSNP151
56TcSNP1520 57TcSNP799 58TcSNP899 59TcSNP226 60TcSNP1439
61TcSNP1442 62TcSNP193 63TcSNP25 64TcSNP364 65TcSNP144
66TcSNP230 67TcSNP560 68TcSNP723 69TcSNP731 70TcSNP701
71TcSNP1041 72TcSNP645 73TcSNP917 74Tcm003s01336581 75Tcm003s07402719
76Tcm001s00947643 77Tcm006s26664133 78Tcm002s20575712 79TcSNP529 80TcSNP1458
81TcSNP60 82TcSNP430 83TcSNP823 84TcSNP619 85TcSNP994
86TcSNP1144 87TcSNP1156 88TcSNP469 89TcSNP999 90TcSNP242
91TcSNP1253 92TcSNP1414 93TcSNP154 94TcSNP240