SNP Profiles of PA 56 [PER]   View Data

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 Key

 1 2 3 4 5 6 7 8 9 10 11 12 13 14
_Input profile
AAACCTCCGGGGCCCCCCCCGGTTCCTT
1._PA_72_[PER]___
AAACCTCCGGGGCCCCCCCCGGTTCCTT
2._PA_72_[PER]___
AAACCTCCGGGGCCCCCCCCGGTTCCTT
3._PA_72_[PER]___
AAACCTCCGGGGCCCCCCCCGGTTCCTT
4._PA_72_[PER]___
AAACCTCCGGGGCCCCCCCCGGTTCCTT
5._PA_72_[PER]___
AAACCTCCGGGGCCCCCCCCGGTTCCTT
6._PA_72_[PER]___
AAACCTCCGGGGCCCCCCCCGGTTCCTT
7._PA_72_[PER]___
AAACCTCCGGGGCCCCCCCCGGTTCCTT
8._PA_72_[PER]___
AAACCTCCGGGGCCCCCCCCGGTTCCTT
9._PA_72_[PER]___
AAACCTCCGGGGCCCCCCCCGGTTCCTT
10._PA_72_[PER]___
AAACCTCC________CCCCGG__CC__
11._PA_72_[PER]___
AAACCTCC________CCCCGG__CC__
12._PA_72_[PER]___
AAACCTCC________CCCCGG__CC__
13._PA_72_[PER]___
AAACCTCC________CCCCGG__CC__
14._PA_72_[PER]___
AAACCTCC________CCCCGG__CC__
15._PA_72_[PER]___
AAACCTCC________CCCCGG__CC__
16._PA_72_[PER]___
AAACCTCC________CCCCGG__CC__
17._PA_72_[PER]___
AAACCTCC________CCCCGG__CC__
18._PA_72_[PER]___
AAACCTCC________CCCCGG__CC__
19._PA_72_[PER]___
AAACCTCC________CCCCGG__CC__
20._PA_72_[PER]___
AAACCTCC________CCCCGG__CC__
21._PA_72_[PER]___
AAACCTCC________CCCCGG__CC__
22._PA_72_[PER]___
AAAC__CCGGGG__GGGG__GGAAGGAA
 15 16 17 18 19 20 21 22 23 24 25 26 27 28
_Input profile
AACCAAGGGGCCGGCTAATTGGAAAACC
1._PA_72_[PER]___
AACCAAGGGGCCGGCTAATTGGAAAACC
2._PA_72_[PER]___
AACCAAGGGGCCGGCTAATTGGAAAACC
3._PA_72_[PER]___
AACCAAGGGGCCGGCTAATTGGAAAACC
4._PA_72_[PER]___
AACCAAGGGGCCGGCTAATTGGAAAACC
5._PA_72_[PER]___
AACCAAGGGGCCGGCTAATTGGAAAACC
6._PA_72_[PER]___
AACCAAGGGGCCGGCTAATTGGAAAACC
7._PA_72_[PER]___
AACCAAGGGGCCGGCTAATTGGAAAACC
8._PA_72_[PER]___
AACCAAGGGGCCGGCTAATTGGAAAACC
9._PA_72_[PER]___
AACCAAGGGGCCGGCTAATTGGAAAACC
10._PA_72_[PER]___
______GG____GG________AAAA__
11._PA_72_[PER]___
______GG____GG________AAAA__
12._PA_72_[PER]___
______GG____GG________AAAA__
13._PA_72_[PER]___
______GG____GG________AAAA__
14._PA_72_[PER]___
______GG____GG________AAAA__
15._PA_72_[PER]___
______GG____GG________AAAA__
16._PA_72_[PER]___
______GG____GG________AAAA__
17._PA_72_[PER]___
______GG____GG________AAAA__
18._PA_72_[PER]___
______GG____GG________AAAA__
19._PA_72_[PER]___
______GG____GG________AAAA__
20._PA_72_[PER]___
______GG____GG________AAAA__
21._PA_72_[PER]___
______GGTTCCGG________AAAA__
22._PA_72_[PER]___
TTCCAGGGCC__GGAGAAAAGGAAAAGG
 29 30 31 32 33 34 35 36 37 38 39 40 41 42
_Input profile
GGAATTTTGGCGCCAGGTGGGTAGTTAG
1._PA_72_[PER]___
GGAATTTTGGCGCCAGGTGGGTAGTTAG
2._PA_72_[PER]___
GGAATTTTGGCGCCAGGTGGGTAGTTAG
3._PA_72_[PER]___
GGAATTTTGGCGCCAGGTGGGTAGTTAG
4._PA_72_[PER]___
GGAATTTTGGCGCCAGGTGGGTAGTTAG
5._PA_72_[PER]___
GGAATTTTGGCGCCAGGTGGGTAGTTAG
6._PA_72_[PER]___
GGAATTTTGGCGCCAGGTGGGTAGTTAG
7._PA_72_[PER]___
GGAATTTTGGCGCCAGGTGGGTAGTTAG
8._PA_72_[PER]___
GGAATTTTGGCGCCAGGTGGGTAGTTAG
9._PA_72_[PER]___
GGAATTTTGGCGCCAGGTGGGTAGTTAG
10._PA_72_[PER]___
GGAA______CG__AGGT____AG____
11._PA_72_[PER]___
GGAA______CG__AGGT____AG____
12._PA_72_[PER]___
GGAA______CG__AGGT____AG____
13._PA_72_[PER]___
GGAA______CG__AGGT____AG____
14._PA_72_[PER]___
GGAA______CG__AGGT____AG____
15._PA_72_[PER]___
GGAA______CG__AGGT____AG____
16._PA_72_[PER]___
GGAA______CG__AGGT____AG____
17._PA_72_[PER]___
GGAA______CG__AGGT____AG____
18._PA_72_[PER]___
GGAA______CG__AGGT____AG____
19._PA_72_[PER]___
GGAA______CG__AGGT____AG____
20._PA_72_[PER]___
GGAA______CG__AGGT____AG____
21._PA_72_[PER]___
GGAA______CG__AGGT____AG____
22._PA_72_[PER]___
CCAAAAAAGGCGCCAGACCCACAGAAAG
 43 44 45 46 47 48 49 50 51 52 53 54 55 56
_Input profile
CCGGTTCCAAGGAACCCCGGAAGGCCCT
1._PA_72_[PER]___
CCGGTTCCAAGGAACCCCGGAAGGCCCT
2._PA_72_[PER]___
CCGGTTCCAAGGAACCCCGGAAGGCCCT
3._PA_72_[PER]___
CCGGTTCCAAGGAACCCCGGAAGGCCCT
4._PA_72_[PER]___
CCGGTTCCAAGGAACCCCGGAAGGCCCT
5._PA_72_[PER]___
CCGGTTCCAAGGAACCCCGGAAGGCCCT
6._PA_72_[PER]___
CCGGTTCCAAGGAACCCCGGAAGGCCCT
7._PA_72_[PER]___
CCGGTTCCAAGGAACCCCGGAAGGCCCT
8._PA_72_[PER]___
CCGGTTCCAAGGAACCCCGGAAGGCCCT
9._PA_72_[PER]___
CCGGTTCCAAGGAACCCCGGAAGGCCCT
10._PA_72_[PER]___
______CC________________CCCT
11._PA_72_[PER]___
______CC________________CCCT
12._PA_72_[PER]___
______CC________________CCCT
13._PA_72_[PER]___
______CC________________CCCT
14._PA_72_[PER]___
______CC________________CCCT
15._PA_72_[PER]___
______CC________________CCCT
16._PA_72_[PER]___
______CC________________CCCT
17._PA_72_[PER]___
______CC________________CCCT
18._PA_72_[PER]___
______CC________________CCCT
19._PA_72_[PER]___
______CC________________CCCT
20._PA_72_[PER]___
______CC________________CCCT
21._PA_72_[PER]___
______CC________________CCCT
22._PA_72_[PER]___
GGCC__GG__GGAAGG__GGAACCGGAG
 57 58 59 60 61 62 63 64 65 66 67 68 69 70
_Input profile
TTGGCCCCCTAAGGGGACAGGTGGAGCC
1._PA_72_[PER]___
TTGGCCCCCTAAGGGGACAGGTGGAGCC
2._PA_72_[PER]___
TTGGCCCCCTAAGGGGACAGGTGGAGCC
3._PA_72_[PER]___
TTGGCCCCCTAAGGGGACAGGTGGAGCC
4._PA_72_[PER]___
TTGGCCCCCTAAGGGGACAGGTGGAGCC
5._PA_72_[PER]___
TTGGCCCCCTAAGGGGACAGGTGGAGCC
6._PA_72_[PER]___
TTGGCCCCCTAAGGGGACAGGTGGAGCC
7._PA_72_[PER]___
TTGGCCCCCTAAGGGGACAGGTGGAGCC
8._PA_72_[PER]___
TTGGCCCCCTAAGGGGACAGGTGGAGCC
9._PA_72_[PER]___
TTGGCCCCCTAAGGGGACAGGTGGAGCC
10._PA_72_[PER]___
____CC__CTAAGG__ACAGGTGG____
11._PA_72_[PER]___
____CC__CTAAGG__ACAGGTGG____
12._PA_72_[PER]___
____CC__CTAAGG__ACAGGTGG____
13._PA_72_[PER]___
____CC__CTAAGG__ACAGGTGG____
14._PA_72_[PER]___
____CC__CTAAGG__ACAGGTGG____
15._PA_72_[PER]___
____CC__CTAAGG__ACAGGTGG____
16._PA_72_[PER]___
____CC__CTAAGG__ACAGGTGG____
17._PA_72_[PER]___
____CC__CTAAGG__ACAGGTGG____
18._PA_72_[PER]___
____CC__CTAAGG__ACAGGTGG____
19._PA_72_[PER]___
____CC__CTAAGG__ACAGGTGG____
20._PA_72_[PER]___
____CC__CTACGG__ACAGGTGG____
21._PA_72_[PER]___
________CTACGG__ACAGGT______
22._PA_72_[PER]___
AAGGGGGGAGACGGGGACAGACCCAG__
 71 72 73 74 75 76 77 78 79 80 81 82 83 84
_Input profile
CCAACTACAAAACCAGACGGCCATAATT
1._PA_72_[PER]___
CCAACTACAAAACCAGACGGCCATAATT
2._PA_72_[PER]___
CCAACTACAAAACCAGACGGCCATAATT
3._PA_72_[PER]___
CCAACTACAAAACCAGACGGCCATAATT
4._PA_72_[PER]___
CCAACTACAAAACCAGACGGCCATAATT
5._PA_72_[PER]___
CCAACTACAAAACCAGACGGCCATAATT
6._PA_72_[PER]___
CCAACTACAAAACCAGACGGCCATAATT
7._PA_72_[PER]___
CCAACTACAAAACCAGACGGCCATAATT
8._PA_72_[PER]___
CCAACTACAAAACCAGACGGCCATAATT
9._PA_72_[PER]___
CCAACTACAAAACCAGACGGCCATAATT
10._PA_72_[PER]___
__AACT__________ACGG______TT
11._PA_72_[PER]___
__AACT__________ACGG______TT
12._PA_72_[PER]___
__AACT__________ACGG______TT
13._PA_72_[PER]___
__AACT__________ACGG______TT
14._PA_72_[PER]___
__AACT__________ACGG______TT
15._PA_72_[PER]___
__AACT__________ACGG______TT
16._PA_72_[PER]___
__AACT__________ACGG______TT
17._PA_72_[PER]___
__AACT__________ACGG______TT
18._PA_72_[PER]___
__AACT__________ACGG______TT
19._PA_72_[PER]___
__AACT__________ACGG______TT
20._PA_72_[PER]___
__AACT__________ACGG______TT
21._PA_72_[PER]___
__AACT__________ACGG______TT
22._PA_72_[PER]___
____AGACAAAACC__ACCCGGATAAAA
 85 86 87 88 89 90 91 92 93 94     
_Input profile
CTCCCTAACCCCTTTTAAGGX_XX_XX_XX_X
1._PA_72_[PER]___
CTCCCTAACCCCTTTTAAGGX_XX_XX_XX_X
2._PA_72_[PER]___
CTCCCTAACCCCTTTTAAGGX_XX_XX_XX_X
3._PA_72_[PER]___
CTCCCTAACCCCTTTTAAGGX_XX_XX_XX_X
4._PA_72_[PER]___
CTCCCTAACCCCTTTTAAGGX_XX_XX_XX_X
5._PA_72_[PER]___
CTCCCTAACCCCTTTTAAGGX_XX_XX_XX_X
6._PA_72_[PER]___
CTCCCTAACCCCTTTTAAGGX_XX_XX_XX_X
7._PA_72_[PER]___
CTCCCTAACCCCTTTTAAGGX_XX_XX_XX_X
8._PA_72_[PER]___
CTCCCTAACCCCTTTTAAGGX_XX_XX_XX_X
9._PA_72_[PER]___
CTCCCTAACCCCTTTTAAGGX_XX_XX_XX_X
10._PA_72_[PER]___
CTCC__AA__CCTTTT____X_XX_XX_XX_X
11._PA_72_[PER]___
CTCC__AA__CCTTTT____X_XX_XX_XX_X
12._PA_72_[PER]___
CTCC__AA__CCTTTT____X_XX_XX_XX_X
13._PA_72_[PER]___
CTCC__AA__CCTTTT____X_XX_XX_XX_X
14._PA_72_[PER]___
CTCC__AA__CCTTTT____X_XX_XX_XX_X
15._PA_72_[PER]___
CTCC__AA__CCTTTT____X_XX_XX_XX_X
16._PA_72_[PER]___
CTCC__AA__CCTTTT____X_XX_XX_XX_X
17._PA_72_[PER]___
CTCC__AA__CCTTTT____X_XX_XX_XX_X
18._PA_72_[PER]___
CTCC__AA__CCTTTT____X_XX_XX_XX_X
19._PA_72_[PER]___
CTCC__AA__CCTTTT____X_XX_XX_XX_X
20._PA_72_[PER]___
CTCC__AA__CCTTTT____X_XX_XX_XX_X
21._PA_72_[PER]___
CTCC__AA__CCTTTT____X_XX_XX_XX_X
22._PA_72_[PER]___
AG__AG____GGAAAATTGGX_XX_XX_XX_X

Input profile: PA_72_[PER] GC-08-051-1-62

 
Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2
 Mars, 2018

1._PA_72_[PER] GC-08-051-1-62

identical
94 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 10
Notes: 10
 Mars, 2018

2._PA_72_[PER] GC-08-051-1-62

identical
94 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 9
Notes: 9
 Mars, 2018

3._PA_72_[PER] GC-08-051-1-62

identical
94 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 8
Notes: 8
 Mars, 2018

4._PA_72_[PER] GC-08-051-1-62

identical
94 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 7
Notes: 7 > FP3
 Mars, 2018

5._PA_72_[PER] GC-08-051-1-62

identical
94 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 6
Notes: 6
 Mars, 2018

6._PA_72_[PER] GC-08-051-1-62

identical
94 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 5
Notes: 5
 Mars, 2018

7._PA_72_[PER] GC-08-051-1-62

identical
94 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: 4 > FP2
 Mars, 2018

8._PA_72_[PER] GC-08-051-1-62

identical
94 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3
 Mars, 2018

9._PA_72_[PER] GC-08-051-1-62

identical
94 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1 > FP1
 Mars, 2018

10._PA_72_[PER]

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8162 7 > FP
 Dapeng Zhang, 2016

11._PA_72_[PER]

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8162 4 > FP
 Dapeng Zhang, 2016

12._PA_72_[PER]

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8162 1 > FP
 Dapeng Zhang, 2016

13._PA_72_[PER]

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8162 10
 Dapeng Zhang, 2016

14._PA_72_[PER]

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8162 9
 Dapeng Zhang, 2016

15._PA_72_[PER]

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8162 8
 Dapeng Zhang, 2016

16._PA_72_[PER]

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8162 6
 Dapeng Zhang, 2016

17._PA_72_[PER]

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8162 5
 Dapeng Zhang, 2016

18._PA_72_[PER]

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8162 3
 Dapeng Zhang, 2016

19._PA_72_[PER]

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8162 2
 Dapeng Zhang, 2016

20._PA_72_[PER]

98.8 %
40 shared markers

International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: Marper D 633
 Dapeng Zhang, 2016

21._PA_72_[PER]

96.3 %
40 shared markers

International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: MARPER D 633
 Dapeng Zhang, 2014

22._PA_72_[PER] GC-08-51-1-62

48.8 %
80 shared markers

Mars Center for Cocoa Science, Brazil
Location: Field: 8, Block: 1, Rep: 62, Tree: 2
Notes: MCCS_Structure_refs_above_0.9membership
 Mars, 2018

 


  Key to SNP Markers

1TcSNP1075 2TcSNP1350 3TcSNP534 4TcSNP591 5TcSNP42
6TcSNP418 7TcSNP702 8TcSNP1096 9TcSNP1060 10TcSNP1165
11TcSNP429 12TcSNP75 13TcSNP891 14TcSNP122 15TcSNP316
16TcSNP521 17TcSNP860 18TcSNP1062 19TcSNP836 20TcSNP878
21TcSNP929 22TcSNP413 23TcSNP653 24TcSNP1149 25TcSNP174
26TcSNP32 27TcSNP372 28TcSNP448 29TcSNP872 30TcSNP953
31TcSNP1034 32TcSNP1175 33TcSNP1111 34TcSNP577 35TcSNP90
36TcSNP998 37TcSNP150 38TcSNP28 39TcSNP751 40TcSNP1484
41TcSNP602 42TcSNP561 43TcSNP894 44TcSNP1063 45TcSNP1126
46TcSNP1270 47TcSNP606 48TcSNP329 49TcSNP689 50TcSNP944
51TcSNP1242 52TcSNP1383 53TcSNP547 54TcSNP776 55TcSNP151
56TcSNP1520 57TcSNP799 58TcSNP899 59TcSNP226 60TcSNP1439
61TcSNP1442 62TcSNP193 63TcSNP25 64TcSNP364 65TcSNP144
66TcSNP230 67TcSNP560 68TcSNP723 69TcSNP731 70TcSNP701
71TcSNP1041 72TcSNP645 73TcSNP917 74Tcm003s01336581 75Tcm003s07402719
76Tcm001s00947643 77Tcm006s26664133 78Tcm002s20575712 79TcSNP529 80TcSNP1458
81TcSNP60 82TcSNP430 83TcSNP823 84TcSNP619 85TcSNP994
86TcSNP1144 87TcSNP1156 88TcSNP469 89TcSNP999 90TcSNP242
91TcSNP1253 92TcSNP1414 93TcSNP154 94TcSNP240