SNP Profiles of EQX /O [CHA]   View Data

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 Key

 1234567891011121314
_Input profile
AAACCTACGGGGCTCCCCCCGGTTCCTT
1._EQX_/O_[CHA]
AAACCTAC________CCCCGG__CC__
2._GC-07-077-4-21
AAACCCCCGGGGCTCCCCCCGGTTCCTT
3._EQX_/O_[CHA]
AAACCCCC________CCCCGG__CC__
4._EQX_/O_[CHA]
AAAATTAC________CTCCGG__CC__
5._EQX_/O_[CHA]
AAAATTAC________CTCCGG__CC__
6._EQX_/O_[CHA]
AAAATTAC________CTCCGG__CC__
7._EQX_/O_[CHA]
AAAATTAC________CTCCGG__CC__
8._GC-07-077-4-21
AAAATTACGGAGCCCCCTCCGGTTCCCT
9._GC-07-077-4-21
AAAATTACGGAGCCCCCTCCGGTTCCCT
10._GC-07-087-5-22
AAAATTACGGAGCCCCCTCCGGTTCCCT
11._GC-07-087-5-22
AAAATTACGGAGCCCCCTCCGGTTCCCT
12._RUQ_138
____CTAC____CT__CC____CTCT__
13._RUQ_138
AAACCTAC________CCCTAG__CT__
 1516171819202122232425262728
_Input profile
AACCAAGGCCGGTTAATTGGATAACCGG
1._EQX_/O_[CHA]
____AA____GG________ATAA__GG
2._GC-07-077-4-21
AACCAGCCCCCCTTAATTGGATAACCGG
3._EQX_/O_[CHA]
____AG____CC________ATAA__GG
4._EQX_/O_[CHA]
____AA____GG________TTAA__CC
5._EQX_/O_[CHA]
____AA____GG________TTAA__CC
6._EQX_/O_[CHA]
____AA____GG________TTAA__CC
7._EQX_/O_[CHA]
____AA____GG________TTAA__CC
8._GC-07-077-4-21
ATCCAAGGCGGGCTAGTTGGTTAACCCC
9._GC-07-077-4-21
ATCCAAGGCGGGCTAGTTGGTTAACCCC
10._GC-07-087-5-22
ATCCAAGGCGGGCTAGTTGGTTAACCCC
11._GC-07-087-5-22
ATCCAAGGCGGGCTAGTTGGTTAACCCC
12._RUQ_138
__________________GG__ATCCCG
13._RUQ_138
____AG____GG________AAAT__CG
 2930313233343536373839404142
_Input profile
AATTGTGGCCCCAGGTGGGTAGTTAGCC
1._EQX_/O_[CHA]
AA______CC__AGGT____AG______
2._GC-07-077-4-21
AATTGTGGCGCC__GGGGTTGGCCAGCC
3._EQX_/O_[CHA]
AA______CG____GG____GG______
4._EQX_/O_[CHA]
AA______CG__AGGT____AA______
5._EQX_/O_[CHA]
AA______CG__AGGT____AA______
6._EQX_/O_[CHA]
AA______CG__AGGT____AA______
7._EQX_/O_[CHA]
AA______CG__AGGT____AA______
8._GC-07-077-4-21
AATTGGAACGACAGGTGGGTAACTAACC
9._GC-07-077-4-21
AATTGGAACGACAGGTGGGTAACTAACC
10._GC-07-087-5-22
AATTGGAACGACAGGTGGGTAACTAACC
11._GC-07-087-5-22
AATTGGAACGACAGGTGGGTAACTAACC
12._RUQ_138
______AGCGCCAAGG____AGCT____
13._RUQ_138
AA______GG__AAGG____AG______
 4344454647484950515253545556
_Input profile
GGTTCCAAGGAACCCCGGAGGTTTCCCT
1._EQX_/O_[CHA]
____CC__________________CCCT
2._GC-07-077-4-21
GGTTCCAAGGAACCCCGGAAGGTTCCCC
3._EQX_/O_[CHA]
____CC__________________CCCC
4._EQX_/O_[CHA]
____CC__________________CCTT
5._EQX_/O_[CHA]
____CC__________________CCTT
6._EQX_/O_[CHA]
____CC__________________CCTT
7._EQX_/O_[CHA]
____CC__________________CCTT
8._GC-07-077-4-21
GTATCCAGGGAGCTCCGGGGGTTTCCTT
9._GC-07-077-4-21
GTATCCAGGGAGCTCCGGGGGTTTCCTT
10._GC-07-087-5-22
GTATCCAGGGAGCTCCGGGGGTTTCCTT
11._GC-07-087-5-22
GTATCCAGGGAGCTCCGGGGGTTTCCTT
12._RUQ_138
GGTT____GG____________CTTT__
13._RUQ_138
____CT__________________TTCC
 5758596061626364656667686970
_Input profile
TTAGCCCTCCAAGGGGACAGTTGGGGTT
1._EQX_/O_[CHA]
____CC__CCAAGG__ACAGTTGG____
2._GC-07-077-4-21
TTGGCCCCCCCCGGGGCCAGGTGGAGTT
3._EQX_/O_[CHA]
____CC__CCCCGG__CCAGGTGG____
4._EQX_/O_[CHA]
____CC__CTAAGG__ACGGTTGT____
5._EQX_/O_[CHA]
____CC__CTAAGG__ACGGTTGT____
6._EQX_/O_[CHA]
____CC__CTAAGG__ACGGTTGT____
7._EQX_/O_[CHA]
____CC__CTAAGG__ACGGTTGT____
8._GC-07-077-4-21
TTAGCCTTCTAAGGAGACGGTTGTGGCT
9._GC-07-077-4-21
TTAGCCTTCTAAGGAGACGGTTGTGGCT
10._GC-07-087-5-22
TTAGCCTTCTAAGGAGACGGTTGTGGCT
11._GC-07-087-5-22
TTAGCCTTCTAAGGAGACGGTTGTGGCT
12._RUQ_138
TT__CGCCTTCC__GGACAAGTGTAG__
13._RUQ_138
____CG__TTCCGG__ACAAGTGT____
 7172737475767778798081828384
_Input profile
CCAGCTACAAACAAAAACGGCCATAATT
1._EQX_/O_[CHA]
__AGCT__________ACGG______TT
2._GC-07-077-4-21
CCAGCTCCAGAACCAAACGGCCTTAATT
3._EQX_/O_[CHA]
__AGCT__________ACGG______TT
4._EQX_/O_[CHA]
__GGTT__________CCGG______TT
5._EQX_/O_[CHA]
__GGTT__________CCGG______TT
6._EQX_/O_[CHA]
__GGTT__________CCGG______TT
7._EQX_/O_[CHA]
__GGTT__________CCGG______TT
8._GC-07-077-4-21
CCGGTTCCAGCCAAAACCGGTTTTAATT
9._GC-07-077-4-21
CCGGTTCCAGCCAAAACCGGTTTTAATT
10._GC-07-087-5-22
CCGGTTCCAGCCAAAACCGGTTTTAATT
11._GC-07-087-5-22
CCGGTTCCAGCCAAAACCGGTTTTAATT
12._RUQ_138
________________AC______CCCT
13._RUQ_138
__AATT__________ACCC______CT
 85868788899091929394    
_Input profile
CTCTTTAACTCCTTTTAAGGX_XX_XX_XX_X
1._EQX_/O_[CHA]
CTCT__AA__CCTTTT____X_XX_XX_XX_X
2._GC-07-077-4-21
CTCCTTAACCCCTTTTAAGGX_XX_XX_XX_X
3._EQX_/O_[CHA]
CTCC__AA__CCTTTT____X_XX_XX_XX_X
4._EQX_/O_[CHA]
TTTT__AG__CCTTTT____X_XX_XX_XX_X
5._EQX_/O_[CHA]
TTTT__AG__CCTTTT____X_XX_XX_XX_X
6._EQX_/O_[CHA]
TTTT__AG__CCTTTT____X_XX_XX_XX_X
7._EQX_/O_[CHA]
TTTT__AG__CCTTTT____X_XX_XX_XX_X
8._GC-07-077-4-21
TTTTTTAGCTCCTTTTAAGGX_XX_XX_XX_X
9._GC-07-077-4-21
TTTTTTAGCTCCTTTTAAGGX_XX_XX_XX_X
10._GC-07-087-5-22
TTTTTTAGCTCCTTTTAAGGX_XX_XX_XX_X
11._GC-07-087-5-22
TTTTTTAGCTCCTTTTAAGGX_XX_XX_XX_X
12._RUQ_138
______AGCCCCTT______X_XX_XX_XX_X
13._RUQ_138
TTCC__AG__CCTTTT____X_XX_XX_XX_X

Input profile: EQX_/O_[CHA] GC-07-087-5-22

 
Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1 > FP1
 Mars, 2018

1._EQX_/O_[CHA]

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 7522 1 > FP
 Dapeng Zhang, 2016

2._EQX_/O_[CHA] GC-07-077-4-21

83.3 %
93 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2
 Mars, 2018

3._EQX_/O_[CHA]

82.1 %
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 7421 2
 Dapeng Zhang, 2016

4._EQX_/O_[CHA]

77.5 %
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 7522 4 > FP
 Dapeng Zhang, 2016

5._EQX_/O_[CHA]

77.5 %
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 7522 2 > FP
 Dapeng Zhang, 2016

6._EQX_/O_[CHA]

77.5 %
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 7421 3
 Dapeng Zhang, 2016

7._EQX_/O_[CHA]

77.5 %
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 7421 1
 Dapeng Zhang, 2016
Population Assignment: 
 Dapeng Zhang, 2016

8._EQX_/O_[CHA] GC-07-077-4-21

75.5 %
94 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1
 Mars, 2018

9._EQX_/O_[CHA] GC-07-077-4-21

75.5 %
94 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3
 Mars, 2018

10._EQX_/O_[CHA] GC-07-087-5-22

75.5 %
94 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2 > FP2
 Mars, 2018

11._EQX_/O_[CHA] GC-07-087-5-22

75.5 %
94 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: 4 > FP3
 Mars, 2018

12._EQX_/O_[CHA] RUQ_138

66.3 %
40 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

13._EQX_/O_[CHA] RUQ_138

61.3 %
40 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2016

 


  Key to SNP Markers

1TcSNP1075 2TcSNP1350 3TcSNP534 4TcSNP591 5TcSNP42
6TcSNP418 7TcSNP702 8TcSNP1096 9TcSNP1060 10TcSNP1165
11TcSNP429 12TcSNP75 13TcSNP891 14TcSNP122 15TcSNP316
16TcSNP521 17TcSNP1062 18TcSNP836 19TcSNP878 20TcSNP929
21TcSNP413 22TcSNP653 23TcSNP1149 24TcSNP174 25TcSNP32
26TcSNP372 27TcSNP448 28TcSNP872 29TcSNP953 30TcSNP1034
31TcSNP1175 32TcSNP1111 33TcSNP577 34TcSNP90 35TcSNP998
36TcSNP150 37TcSNP28 38TcSNP751 39TcSNP1484 40TcSNP602
41TcSNP561 42TcSNP894 43TcSNP1063 44TcSNP1126 45TcSNP1270
46TcSNP606 47TcSNP329 48TcSNP689 49TcSNP944 50TcSNP1242
51TcSNP1383 52TcSNP547 53TcSNP776 54TcSNP1309 55TcSNP151
56TcSNP1520 57TcSNP799 58TcSNP899 59TcSNP226 60TcSNP1439
61TcSNP1442 62TcSNP193 63TcSNP25 64TcSNP364 65TcSNP144
66TcSNP230 67TcSNP560 68TcSNP723 69TcSNP731 70TcSNP701
71TcSNP1041 72TcSNP645 73TcSNP917 74Tcm003s01336581 75Tcm003s07402719
76Tcm001s00947643 77Tcm006s26664133 78Tcm002s20575712 79TcSNP529 80TcSNP1458
81TcSNP60 82TcSNP430 83TcSNP823 84TcSNP619 85TcSNP994
86TcSNP1144 87TcSNP1156 88TcSNP469 89TcSNP999 90TcSNP242
91TcSNP1253 92TcSNP1414 93TcSNP154 94TcSNP240