SNP Profiles of EQX-0 (> EQX-O)   View Data

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 Key

 1 2 3 4 5 6 7 8 9 10 11 12 13 14
_Input profile
AAAATTACGGAGCCCCCTCCGGTTCCCT
1._EQX_/O_[CHA]___
AAAATTACGGAGCCCCCTCCGGTTCCCT
2._EQX_/O_[CHA]___
AAAATTACGGAGCCCCCTCCGGTTCCCT
3._EQX_/O_[CHA]___
AAAATTACGGAGCCCCCTCCGGTTCCCT
4._EQX_/O_[CHA]___
AAAATTAC________CTCCGG__CC__
5._EQX_/O_[CHA]___
AAAATTAC________CTCCGG__CC__
6._EQX_/O_[CHA]___
AAAATTAC________CTCCGG__CC__
7._EQX_/O_[CHA]___
AAAATTAC________CTCCGG__CC__
8._EQX_/O_[CHA]___
AAACCTAC________CCCCGG__CC__
9._EQX_/O_[CHA]___
AAACCTACGGGGCTCCCCCCGGTTCCTT
10._EQX_/O_[CHA]___
AAACCCCCGGGGCTCCCCCCGGTTCCTT
11._EQX_/O_[CHA]___
AAACCCCC________CCCCGG__CC__
12._EQX_/O_[CHA]___
____CTAC____CT__CC____CTCT__
13._EQX_/O_[CHA]___
AAACCTAC________CCCTAG__CT__
 15 16 17 18 19 20 21 22 23 24 25 26 27 28
_Input profile
ATCCAAAAGGCGGGCTAGTTGGTTAACC
1._EQX_/O_[CHA]___
ATCCAAAAGGCGGGCTAGTTGGTTAACC
2._EQX_/O_[CHA]___
ATCCAAAAGGCGGGCTAGTTGGTTAACC
3._EQX_/O_[CHA]___
ATCCAAAAGGCGGGCTAGTTGGTTAACC
4._EQX_/O_[CHA]___
______AA____GG________TTAA__
5._EQX_/O_[CHA]___
______AA____GG________TTAA__
6._EQX_/O_[CHA]___
______AA____GG________TTAA__
7._EQX_/O_[CHA]___
______AA____GG________TTAA__
8._EQX_/O_[CHA]___
______AA____GG________ATAA__
9._EQX_/O_[CHA]___
AACC__AAGGCCGGTTAATTGGATAACC
10._EQX_/O_[CHA]___
AACC__AGCCCCCCTTAATTGGATAACC
11._EQX_/O_[CHA]___
______AG____CC________ATAA__
12._EQX_/O_[CHA]___
____________________GG__ATCC
13._EQX_/O_[CHA]___
______AG____GG________AAAT__
 29 30 31 32 33 34 35 36 37 38 39 40 41 42
_Input profile
CCAATTGGAACGACAGGTGGGTAACTAA
1._EQX_/O_[CHA]___
CCAATTGGAACGACAGGTGGGTAACTAA
2._EQX_/O_[CHA]___
CCAATTGGAACGACAGGTGGGTAACTAA
3._EQX_/O_[CHA]___
CCAATTGGAACGACAGGTGGGTAACTAA
4._EQX_/O_[CHA]___
CCAA______CG__AGGT____AA____
5._EQX_/O_[CHA]___
CCAA______CG__AGGT____AA____
6._EQX_/O_[CHA]___
CCAA______CG__AGGT____AA____
7._EQX_/O_[CHA]___
CCAA______CG__AGGT____AA____
8._EQX_/O_[CHA]___
GGAA______CC__AGGT____AG____
9._EQX_/O_[CHA]___
GGAATTGTGGCCCCAGGTGGGTAGTTAG
10._EQX_/O_[CHA]___
GGAATTGTGGCGCC__GGGGTTGGCCAG
11._EQX_/O_[CHA]___
GGAA______CG____GG____GG____
12._EQX_/O_[CHA]___
CG______AGCGCCAAGG____AGCT__
13._EQX_/O_[CHA]___
CGAA______GG__AAGG____AG____
 43 44 45 46 47 48 49 50 51 52 53 54 55 56
_Input profile
CCGTATCCAGGGAGCTCCGGGGGTTTCC
1._EQX_/O_[CHA]___
CCGTATCCAGGGAGCTCCGGGGGTTTCC
2._EQX_/O_[CHA]___
CCGTATCCAGGGAGCTCCGGGGGTTTCC
3._EQX_/O_[CHA]___
CCGTATCCAGGGAGCTCCGGGGGTTTCC
4._EQX_/O_[CHA]___
______CC__________________CC
5._EQX_/O_[CHA]___
______CC__________________CC
6._EQX_/O_[CHA]___
______CC__________________CC
7._EQX_/O_[CHA]___
______CC__________________CC
8._EQX_/O_[CHA]___
______CC__________________CC
9._EQX_/O_[CHA]___
CCGGTTCCAAGGAACCCCGGAGGTTTCC
10._EQX_/O_[CHA]___
CCGGTTCCAAGGAACCCCGGAAGGTTCC
11._EQX_/O_[CHA]___
______CC__________________CC
12._EQX_/O_[CHA]___
__GGTT____GG____________CTTT
13._EQX_/O_[CHA]___
______CT__________________TT
 57 58 59 60 61 62 63 64 65 66 67 68 69 70
_Input profile
TTTTAGCCTTCTAAGGAGACGGTTGTGG
1._EQX_/O_[CHA]___
TTTTAGCCTTCTAAGGAGACGGTTGTGG
2._EQX_/O_[CHA]___
TTTTAGCCTTCTAAGGAGACGGTTGTGG
3._EQX_/O_[CHA]___
TTTTAGCCTTCTAAGGAGACGGTTGTGG
4._EQX_/O_[CHA]___
TT____CC__CTAAGG__ACGGTTGT__
5._EQX_/O_[CHA]___
TT____CC__CTAAGG__ACGGTTGT__
6._EQX_/O_[CHA]___
TT____CC__CTAAGG__ACGGTTGT__
7._EQX_/O_[CHA]___
TT____CC__CTAAGG__ACGGTTGT__
8._EQX_/O_[CHA]___
CT____CC__CCAAGG__ACAGTTGG__
9._EQX_/O_[CHA]___
CTTTAGCCCTCCAAGGGGACAGTTGGGG
10._EQX_/O_[CHA]___
CCTTGGCCCCCCCCGGGGCCAGGTGGAG
11._EQX_/O_[CHA]___
CC____CC__CCCCGG__CCAGGTGG__
12._EQX_/O_[CHA]___
__TT__CGCCTTCC__GGACAAGTGTAG
13._EQX_/O_[CHA]___
CC____CG__TTCCGG__ACAAGTGT__
 71 72 73 74 75 76 77 78 79 80 81 82 83 84
_Input profile
CTCCGGTTCCAGCCAAAACCGGTTTTAA
1._EQX_/O_[CHA]___
CTCCGGTTCCAGCCAAAACCGGTTTTAA
2._EQX_/O_[CHA]___
CTCCGGTTCCAGCCAAAACCGGTTTTAA
3._EQX_/O_[CHA]___
CTCCGGTTCCAGCCAAAACCGGTTTTAA
4._EQX_/O_[CHA]___
____GGTT__________CCGG______
5._EQX_/O_[CHA]___
____GGTT__________CCGG______
6._EQX_/O_[CHA]___
____GGTT__________CCGG______
7._EQX_/O_[CHA]___
____GGTT__________CCGG______
8._EQX_/O_[CHA]___
____AGCT__________ACGG______
9._EQX_/O_[CHA]___
TTCCAGCTACAAACAAAAACGGCCATAA
10._EQX_/O_[CHA]___
TTCCAGCTCCAGAACCAAACGGCCTTAA
11._EQX_/O_[CHA]___
____AGCT__________ACGG______
12._EQX_/O_[CHA]___
__________________AC______CC
13._EQX_/O_[CHA]___
____AATT__________ACCC______
 85 86 87 88 89 90 91 92 93 94 95    
_Input profile
TTTTTTTTAGCTCCTTTTAAGGX_XX_XX_X
1._EQX_/O_[CHA]___
TTTTTTTTAGCTCCTTTTAAGGX_XX_XX_X
2._EQX_/O_[CHA]___
TTTTTTTTAGCTCCTTTTAAGGX_XX_XX_X
3._EQX_/O_[CHA]___
TTTTTTTTAGCTCCTTTTAAGGX_XX_XX_X
4._EQX_/O_[CHA]___
TTTTTT__AG__CCTTTT____X_XX_XX_X
5._EQX_/O_[CHA]___
TTTTTT__AG__CCTTTT____X_XX_XX_X
6._EQX_/O_[CHA]___
TTTTTT__AG__CCTTTT____X_XX_XX_X
7._EQX_/O_[CHA]___
TTTTTT__AG__CCTTTT____X_XX_XX_X
8._EQX_/O_[CHA]___
TTCTCT__AA__CCTTTT____X_XX_XX_X
9._EQX_/O_[CHA]___
TTCTCTTTAACTCCTTTTAAGGX_XX_XX_X
10._EQX_/O_[CHA]___
TTCTCCTTAACCCCTTTTAAGGX_XX_XX_X
11._EQX_/O_[CHA]___
TTCTCC__AA__CCTTTT____X_XX_XX_X
12._EQX_/O_[CHA]___
CT______AGCCCCTT______X_XX_XX_X
13._EQX_/O_[CHA]___
CTTTCC__AG__CCTTTT____X_XX_XX_X

Input profile: EQX_/O_[CHA] GC-07-077-4-21

 
Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3
 Mars, 2018

1._EQX_/O_[CHA] GC-07-077-4-21

identical
95 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1
 Mars, 2018

2._EQX_/O_[CHA] GC-07-087-5-22

identical
95 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2 > FP2
 Mars, 2018

3._EQX_/O_[CHA] GC-07-087-5-22

identical
95 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: 4 > FP3
 Mars, 2018

4._EQX_/O_[CHA]

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 7522 4 > FP
 Dapeng Zhang, 2016

5._EQX_/O_[CHA]

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 7522 2 > FP
 Dapeng Zhang, 2016

6._EQX_/O_[CHA]

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 7421 3
 Dapeng Zhang, 2016

7._EQX_/O_[CHA]

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 7421 1
 Dapeng Zhang, 2016

8._EQX_/O_[CHA]

77.5 %
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 7522 1 > FP
 Dapeng Zhang, 2016

9._EQX_/O_[CHA] GC-07-087-5-22

75.5 %
94 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1 > FP1
 Mars, 2018

10._EQX_/O_[CHA] GC-07-077-4-21

64 %
93 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2
 Mars, 2018

11._EQX_/O_[CHA]

61.5 %
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 7421 2
 Dapeng Zhang, 2016

12._EQX_/O_[CHA] RUQ_138

58.8 %
40 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

13._EQX_/O_[CHA] RUQ_138

56.3 %
40 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2016

 


  Key to SNP Markers

1TcSNP1075 2TcSNP1350 3TcSNP534 4TcSNP591 5TcSNP42
6TcSNP418 7TcSNP702 8TcSNP1096 9TcSNP1060 10TcSNP1165
11TcSNP429 12TcSNP75 13TcSNP891 14TcSNP122 15TcSNP316
16TcSNP521 17TcSNP860 18TcSNP1062 19TcSNP836 20TcSNP878
21TcSNP929 22TcSNP413 23TcSNP653 24TcSNP1149 25TcSNP174
26TcSNP32 27TcSNP372 28TcSNP448 29TcSNP872 30TcSNP953
31TcSNP1034 32TcSNP1175 33TcSNP1111 34TcSNP577 35TcSNP90
36TcSNP998 37TcSNP150 38TcSNP28 39TcSNP751 40TcSNP1484
41TcSNP602 42TcSNP561 43TcSNP894 44TcSNP1063 45TcSNP1126
46TcSNP1270 47TcSNP606 48TcSNP329 49TcSNP689 50TcSNP944
51TcSNP1242 52TcSNP1383 53TcSNP547 54TcSNP776 55TcSNP1309
56TcSNP151 57TcSNP1520 58TcSNP799 59TcSNP899 60TcSNP226
61TcSNP1439 62TcSNP1442 63TcSNP193 64TcSNP25 65TcSNP364
66TcSNP144 67TcSNP230 68TcSNP560 69TcSNP723 70TcSNP731
71TcSNP701 72TcSNP1041 73TcSNP645 74TcSNP917 75Tcm003s01336581
76Tcm003s07402719 77Tcm001s00947643 78Tcm006s26664133 79Tcm002s20575712 80TcSNP529
81TcSNP1458 82TcSNP60 83TcSNP430 84TcSNP823 85TcSNP619
86TcSNP994 87TcSNP1144 88TcSNP1156 89TcSNP469 90TcSNP999
91TcSNP242 92TcSNP1253 93TcSNP1414 94TcSNP154 95TcSNP240