SNP Profiles of NA 670   View Data

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 Key

 1234567891011121314
_Input profile
AAAACTACGGGGCTCCCCCTGGTTCCTT
1._GC-05-169-4-22
AAAACTACGGGGCTCCCCCTGGTTCCTT
2._GC-05-169-4-22
AAAACTACGGGGCTCCCCCTGGTTCCTT
3._GC-05-169-4-22
AAAACTACGGGGCTCCCCCTGGTTCCTT
4._NA_670
AAAACTAC________CCCTGG__CC__
5._NA_670
AAAACTAC________CCCTGG__CC__
6._NA_670
AAAACTAC________CCCTGG__CC__
7._NA_670
AAAACTAC________CCCTGG__CC__
8._RUQ_1238
AAAACTAC________CCCTGG__CC__
9._RUQ_1238
____CTAC____TT__CC____TTCC__
10._NA_670
AAAACTAC________CCCTGG__CC__
11._RUQ_1238
______AC____TT______________
12._RUQ_1238
AAAA__ACGGGG__GGGG__GGAAGGAA
 1516171819202122232425262728
_Input profile
AAAAAGGGCCGGCCAATTGGTTAACCCG
1._GC-05-169-4-22
AAAAAGGGCCGGCCAATTGGTTAACCCG
2._GC-05-169-4-22
AAAAAGGGCCGGCCAATTGGTTAACCCG
3._GC-05-169-4-22
AAAAAGGGCCGGCCAATTGGTTAACCCG
4._NA_670
____AG____GG________TTAA__CG
5._NA_670
____AG____GG________TTAA__CG
6._NA_670
____AG____GG________TTAA__CG
7._NA_670
____AG____GG________TTAA__CG
8._RUQ_1238
____AG____GG________TTAA__CG
9._RUQ_1238
________CC________GG__AACCCG
10._NA_670
____AG____GG________TTAA__CG
11._RUQ_1238
____AGTT__________________CG
12._RUQ_1238
TTAAAGCC__GGGGAAAAGGTTAAGGCG
 2930313233343536373839404142
_Input profile
AATTGGGGGGCCAGGGGGTTAGCCGGCC
1._GC-05-169-4-22
AATTGGGGGGCCAGGGGGTTAGCCGGCC
2._GC-05-169-4-22
AATTGGGGGGCCAGGGGGTTAGCCGGCC
3._GC-05-169-4-22
AATTGGGGGGCCAGGGGGTTAGCCGGCC
4._NA_670
AA______GG__AGGG____AG______
5._NA_670
AA______GG__AGGG____AG______
6._NA_670
AA______GG__AGGG____AG______
7._NA_670
AA______GG__AGGG____AG______
8._RUQ_1238
AA______GG__AGGG____AG______
9._RUQ_1238
______GGGGCCAGGG____AGCC____
10._NA_670
AA______GG__AGGG____AG______
11._RUQ_1238
________GG__AG________CC____
12._RUQ_1238
AAAACCGGGGCCAGCCCCAAAGGGGGGG
 4344454647484950515253545556
_Input profile
GGTTTTAAGGAACCCCGGAGGGTTCCCC
1._GC-05-169-4-22
GGTTTTAAGGAACCCCGGAGGGTTCCCC
2._GC-05-169-4-22
GGTTTTAAGGAACCCCGGAGGGTTCCCC
3._GC-05-169-4-22
GGTTTTAAGGAACCCCGGAGGGTTCCCC
4._NA_670
____TT__________________CCCC
5._NA_670
____TT__________________CCCC
6._NA_670
____TT__________________CCCC
7._NA_670
____TT__________________CCCC
8._RUQ_1238
____TT__________________CCCC
9._RUQ_1238
GGTT____GG____________TTCC__
10._NA_670
____TT__________________CCCC
11._RUQ_1238
________GG__________________
12._RUQ_1238
CC__AA__GGAAGG__GGAGCCAAGGGG
 5758596061626364656667686970
_Input profile
TTGGCGCCTTAAGGGGCCAGGGGGAGTT
1._GC-05-169-4-22
TTGGCGCCTTAAGGGGCCAGGGGGAGTT
2._GC-05-169-4-22
TTGGCGCCTTAAGGGGCCAGGGGGAGTT
3._GC-05-169-4-22
TTGGCGCCTTAAGGGGCCAGGGGGAGTT
4._NA_670
____CG__TTAAGG__CCAGGGGG____
5._NA_670
____CG__TTAAGG__CCAGGGGG____
6._NA_670
____CG__TTAAGG__CCAGGGGG____
7._NA_670
____CG__TTAAGG__CCAGGGGG____
8._RUQ_1238
____CG__TTAAGG__CCAGGGGG____
9._RUQ_1238
TTGGCGCCTTAA__GGCCAGGGGGAG__
10._NA_670
____GG__TTAAGG__CCAGGGGG____
11._RUQ_1238
__GG____________CCAG__GGAG__
12._RUQ_1238
AAGGCGGGAAAAGGGGCCAGCCCCAG__
 7172737475767778798081828384
_Input profile
CCAACTCCAAACACAACCCCCCAACCCC
1._GC-05-169-4-22
CCAACTCCAAACACAACCCCCCAACCCC
2._GC-05-169-4-22
CCAACTCCAAACACAACCCCCCAACCCC
3._GC-05-169-4-22
CCAACTCCAAACACAACCCCCCAACCCC
4._NA_670
__AACT__________CCCC______CC
5._NA_670
__AACT__________CCCC______CC
6._NA_670
__AACT__________CCCC______CC
7._NA_670
__AACT__________CCCC______CC
8._RUQ_1238
__AACT__________CCCC______CC
9._RUQ_1238
________________CCCC____CCCC
10._NA_670
__AACT__________CCCC______CC
11._RUQ_1238
__AA____________CCCC____CC__
12._RUQ_1238
____AGCCAAACAC__CCGGGGAACCGG
 85868788899091929394    
_Input profile
TTCCTTAACCCCGTTTTTGGX_XX_XX_XX_X
1._GC-05-169-4-22
TTCCTTAACCCCGTTTTTGGX_XX_XX_XX_X
2._GC-05-169-4-22
TTCCTTAACCCCGTTTTTGGX_XX_XX_XX_X
3._GC-05-169-4-22
TTCCTTAACCCCGTTTTTGGX_XX_XX_XX_X
4._NA_670
TTCC__AA__CCGTTT____X_XX_XX_XX_X
5._NA_670
TTCC__AA__CCGTTT____X_XX_XX_XX_X
6._NA_670
TTCC__AA__CCGTTT____X_XX_XX_XX_X
7._NA_670
TTCC__AA__CCGTTT____X_XX_XX_XX_X
8._RUQ_1238
TTCC__AA__CCGTTT____X_XX_XX_XX_X
9._RUQ_1238
______AACCCCGT______X_XX_XX_XX_X
10._NA_670
TTCC__AA__CCGTTT____X_XX_XX_XX_X
11._RUQ_1238
__CC____CC__GT______X_XX_XX_XX_X
12._RUQ_1238
AA__AA____GGAAAAAAGGX_XX_XX_XX_X

Input profile: NA_670 GC-05-169-4-22

 
Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3 > FP2
 Mars, 2018

1._NA_670 GC-05-169-4-22

identical
94 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2 > FP1
 Mars, 2018

2._NA_670 GC-05-169-4-22

identical
94 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: 4 > FP3
 Mars, 2018

3._NA_670 GC-05-169-4-22

identical
94 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 5
Notes: 5 > FP4
 Mars, 2018

4._NA_670

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 5422 5 > FP
 Dapeng Zhang, 2016

5._NA_670

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 5422 4 > FP
 Dapeng Zhang, 2016

6._NA_670

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 5422 3 > FP
 Dapeng Zhang, 2016

7._NA_670

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 5422 2 > FP
 Dapeng Zhang, 2016

8._NA_670 RUQ_1238

identical
40 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2016

9._NA_670 RUQ_1238

98.8 %
43 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

10._NA_670

98.8 %
40 shared markers

International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: 5A D317 T4
 Dapeng Zhang, 2016

11._NA_670 RUQ_1238

92.9 %
21 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Lambert Motilal, 2023

12._NA_670 RUQ_1238

51.3 %
80 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
Notes: Reading_Collection
 Mars, 2018

 


  Key to SNP Markers

1TcSNP1075 2TcSNP1350 3TcSNP534 4TcSNP591 5TcSNP42
6TcSNP418 7TcSNP702 8TcSNP1096 9TcSNP1060 10TcSNP1165
11TcSNP429 12TcSNP75 13TcSNP891 14TcSNP122 15TcSNP316
16TcSNP521 17TcSNP1062 18TcSNP836 19TcSNP878 20TcSNP929
21TcSNP413 22TcSNP653 23TcSNP1149 24TcSNP174 25TcSNP32
26TcSNP372 27TcSNP448 28TcSNP872 29TcSNP953 30TcSNP1034
31TcSNP1175 32TcSNP1111 33TcSNP577 34TcSNP90 35TcSNP998
36TcSNP150 37TcSNP28 38TcSNP751 39TcSNP1484 40TcSNP602
41TcSNP561 42TcSNP894 43TcSNP1063 44TcSNP1126 45TcSNP1270
46TcSNP606 47TcSNP329 48TcSNP689 49TcSNP944 50TcSNP1242
51TcSNP1383 52TcSNP547 53TcSNP776 54TcSNP1309 55TcSNP151
56TcSNP1520 57TcSNP799 58TcSNP899 59TcSNP226 60TcSNP1439
61TcSNP1442 62TcSNP193 63TcSNP25 64TcSNP364 65TcSNP144
66TcSNP230 67TcSNP560 68TcSNP723 69TcSNP731 70TcSNP701
71TcSNP1041 72TcSNP645 73TcSNP917 74Tcm003s01336581 75Tcm003s07402719
76Tcm001s00947643 77Tcm006s26664133 78Tcm002s20575712 79TcSNP529 80TcSNP1458
81TcSNP60 82TcSNP430 83TcSNP823 84TcSNP619 85TcSNP994
86TcSNP1144 87TcSNP1156 88TcSNP469 89TcSNP999 90TcSNP242
91TcSNP1253 92TcSNP1414 93TcSNP154 94TcSNP240