SNP Profiles of MO-9   View Data

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 Key

 1 2 3 4 5 6 7 8 9 10 11 12 13 14
_Input profile
ACCTACGGAGCTCTCTCTAGCTCTCTAT
1._GC-05-119-3-21
ACCTACGGAGCTCTCTCTAGCTCTCTAT
2._GC-05-071-2-22
ACCTACGGAGCTCTCTCTAGCTCTCTAT
3._GC-05-071-2-22
ACCTACGGAGCTCTCTCTAGCTCTCTAT
4._GC-05-071-2-22
ACCTACGGAGCTCTCTCTAGCTCTCTAT
5._MO_9
ACCTAC________CTCTAG__CT____
6._MO_9
ACCTAC________CTCTAG__CT____
7._MO_9
ACCTAC________CTCTAG__CT____
8._MO_9
ACCTAC________CTCTAG__CT____
9._MO_9
ACCTAC________CTCTAG__CT____
10._GC-05-119-3-21
ACCTCCGGGGCCCCCCCCGGTTCCTTAA
11._GC-05-071-2-22
ACCTCCGGGGCCCCCCCCGGTTCCTTAA
12._GC-05-119-3-21
ACCTCCGGGGCCCCCCCCGGTTCCTTAA
13._GC-05-119-3-21
ACCTCCGGGGCCCCCCCCGGTTCCTTAA
14._GC-05-071-2-22
ACCTCCGGGGCCCCCCCCGGTTCCTTAA
15._MO_9
ACCTCC________CCCCGG__CC____
16._MO_9
ACCTCC________CCCCGG__CC____
17._MO_9
ACCTCC________CCCCGG__CC____
18._MO_9
ACCTCC________CCCCGG__CC____
19._MO_9
ACCTCC________CCCCGG__CC____
20._MO_9
ACCTCC________CCCCGG__CC____
21._RUQ_1691
____CC____CT________________
22._RUQ_1691
AC__CCGGGG__GGGG__GGAAGGAATT
 15 16 17 18 19 20 21 22 23 24 25 26 27 28
_Input profile
ACAAAGCGCCCGCTAATTGGATATGGCC
1._GC-05-119-3-21
ACAAAGCGCCCGCTAATTGGATATGGCC
2._GC-05-071-2-22
ACAAAGCGCCCGCTAATTGGATATGGCC
3._GC-05-071-2-22
ACAAAGCGCCCGCTAATTGGATATGGCC
4._GC-05-071-2-22
ACAAAGCGCCCGCTAATTGGATATGGCC
5._MO_9
____AG____CG________ATAT__CC
6._MO_9
____AG____CG________ATAT__CC
7._MO_9
____AG____CG________ATAT__CC
8._MO_9
____AG____CG________ATAT__CC
9._MO_9
____AG____CG________ATAT__CC
10._GC-05-119-3-21
CCAAGGGGCCCGTTAATTGGAAAACCGG
11._GC-05-071-2-22
CCAAGGGGCCCGTTAATTGGAAAACCGG
12._GC-05-119-3-21
CCAAGGGGCCCGTTAATTGGAAAACCGG
13._GC-05-119-3-21
CCAAGGGGCCCGTTAATTGGAAAACCGG
14._GC-05-071-2-22
CCAAGGGGCCCGTTAATTGGAAAACCGG
15._MO_9
____GG____CG________AAAA__GG
16._MO_9
____GG____CG________AAAA__GG
17._MO_9
____GG____CG________AAAA__GG
18._MO_9
____GG____CG________AAAA__GG
19._MO_9
____GG____CG________AAAA__GG
20._MO_9
____GG____CG________AAAA__GG
21._RUQ_1691
____GGTT__________________GG
22._RUQ_1691
CCAGGGCC__CGAAAAAAGGAAAAGGCC
 29 30 31 32 33 34 35 36 37 38 39 40 41 42
_Input profile
ATTTGTAGCGACAGGGGTGTAACCAGCC
1._GC-05-119-3-21
ATTTGTAGCGACAGGGGTGTAACCAGCC
2._GC-05-071-2-22
ATTTGTAGCGACAGGGGTGTAACCAGCC
3._GC-05-071-2-22
ATTTGTAGCGACAGGGGTGTAACCAGCC
4._GC-05-071-2-22
ATTTGTAGCGACAGGGGTGTAACCAGCC
5._MO_9
AT______CG__AGGG____AA______
6._MO_9
AT______CG__AGGG____AA______
7._MO_9
AT______CG__AGGG____AA______
8._MO_9
AT______CG__AGGG____AA______
9._MO_9
AT______CG__AGGG____AA______
10._GC-05-119-3-21
AATTTTAGGGCCAGGTGGGTGGTTGGCC
11._GC-05-071-2-22
AATTTTAGGGCCAGGTGGGTGGTTGGCC
12._GC-05-119-3-21
AATTTTAGGGCCAGGTGGGTGGTTGGCC
13._GC-05-119-3-21
AATTTTAGGGCCAGGTGGGTGGTTGGCC
14._GC-05-071-2-22
AATTTTAGGGCCAGGTGGGTGGTTGGCC
15._MO_9
AA______GG__AGGT____GG______
16._MO_9
AA______GG__AGGT____GG______
17._MO_9
AA______GG__AGGT____GG______
18._MO_9
AA______GG__AGGT____GG______
19._MO_9
AA______GG__AGGT____GG______
20._MO_9
AA______GG__AGGT____GG______
21._RUQ_1691
________GG__AG________TT____
22._RUQ_1691
AAAAAAAGGGCCAGACCCACGGAAGGGG
 43 44 45 46 47 48 49 50 51 52 53 54 55 56
_Input profile
GGATCCAGAAAACTACAGAGGGCTCTTT
1._GC-05-119-3-21
GGATCCAGAAAACTACAGAGGGCTCTTT
2._GC-05-071-2-22
GGATCCAGAAAACTACAGAGGGCTCTTT
3._GC-05-071-2-22
GGATCCAGAAAACTACAGAGGGCTCTTT
4._GC-05-071-2-22
GGATCCAGAAAACTACAGAGGGCTCTTT
5._MO_9
____CC________________CTCT__
6._MO_9
____CC________________CTCT__
7._MO_9
____CC________________CTCT__
8._MO_9
____CC________________CTCT__
9._MO_9
____CC________________CTCT__
10._GC-05-119-3-21
GGTTCCAAGGAACCCCGGAGGGCCCCTT
11._GC-05-071-2-22
GGTTCCAAGGAACCCCGGAGGGCCCCTT
12._GC-05-119-3-21
GGTTCCAAGGAACCCCGGAGGGCCCCTT
13._GC-05-119-3-21
GGTTCCAAGGAACCCCGGAGGGCCCCTT
14._GC-05-071-2-22
GGTTCCAAGGAACCCCGGAGGGCCCCTT
15._MO_9
____CC________________CCCC__
16._MO_9
____CC________________CCCC__
17._MO_9
____CC________________CCCC__
18._MO_9
____CC________________CCCC__
19._MO_9
____CC________________CCCC__
20._MO_9
____CC________________CCCC__
21._RUQ_1691
________GG__________________
22._RUQ_1691
CC__GG__GGAAGG__GGAGCCGGGGAA
 57 58 59 60 61 62 63 64 65 66 67 68 69 70
_Input profile
AGCGCTTTACCGAGAAAGGTGTAGCTCC
1._GC-05-119-3-21
AGCGCTTTACCGAGAAAGGTGTAGCTCC
2._GC-05-071-2-22
AGCGCTTTACCGAGAAAGGTGTAGCTCC
3._GC-05-071-2-22
AGCGCTTTACCGAGAAAGGTGTAGCTCC
4._GC-05-071-2-22
AGCGCTTTACCGAGAAAGGTGTAGCTCC
5._MO_9
__CG__TTACCG__AAAGGTGT______
6._MO_9
__CG__TTACCG__AAAGGTGT______
7._MO_9
__CG__TTACCG__AAAGGTGT______
8._MO_9
__CG__TTACCG__AAAGGTGT______
9._MO_9
__CG__TTACCG__AAAGGTGT______
10._GC-05-119-3-21
GGCCCTCT__GGGGACAAGTGGAGCTCC
11._GC-05-071-2-22
__CCCTCTAAGGGGACAAGTGGAGCTCC
12._GC-05-119-3-21
GGCCCTCTAAGGGGACAAGTGGAGCTCC
13._GC-05-119-3-21
GGCCCTCTAAGGGGACAAGTGGAGCTCC
14._GC-05-071-2-22
GGCCCTCTAAGGGGACAAGTGGAGCTCC
15._MO_9
______CTACGG__ACAAGTGG______
16._MO_9
__CC__CT__GG__ACAAGTGG______
17._MO_9
__CC__CTAAGG__ACAAGTGG______
18._MO_9
__CC__CTAAGG__ACAAGTGG______
19._MO_9
__CC__CTAAGG__ACAAGTGG______
20._MO_9
__CC__CTAAGG__ACAAGTGG______
21._RUQ_1691
GG____________ACAA__GGAG____
22._RUQ_1691
GGGGAGAGACGGGGACAAACCCAG____
 71 72 73 74 75 76 77 78 79 80 81 82 83 84
_Input profile
AACTACGGCCACAAACCGCTAAACTTCT
1._GC-05-119-3-21
AACTACGGCCACAAACCGCTAAACTTCT
2._GC-05-071-2-22
AACTACGGCCACAAACCGCTAAACTTCT
3._GC-05-071-2-22
AACTACGGCCACAAACCGCTAAACTTCT
4._GC-05-071-2-22
AACTACGGCCACAAACCGCTAAACTTCT
5._MO_9
AACT__________ACCG______TTCT
6._MO_9
AACT__________ACCG______TTCT
7._MO_9
AACT__________ACCG______TTCT
8._MO_9
AACT__________ACCG______TTCT
9._MO_9
AACT__________ACCG______TTCT
10._GC-05-119-3-21
AACTCCAGCCACGGCCCGCCTTAATTCT
11._GC-05-071-2-22
AACTCCAGCCACGGCCCGCCTTAATTCT
12._GC-05-119-3-21
AACTCCAGCCACGGCCCGCCTTAATTCT
13._GC-05-119-3-21
AACTCCAGCCACGGCCCGCCTTAATTCT
14._GC-05-071-2-22
AACTCCAGCCACGGCCCGCCTTAATTCT
15._MO_9
AACT__________CCCG______TTCT
16._MO_9
AACT__________CCCG______TTCT
17._MO_9
AACT__________CCCG______TTCT
18._MO_9
AACT__________CCCG______TTCT
19._MO_9
AACT__________CCCG______TTCT
20._MO_9
AACT__________CCCG______TTCT
21._RUQ_1691
AA____________CCCG____AA____
22._RUQ_1691
__AGCCAGCCAC__CCCGGGTTAAAAAG
 85 86 87 88 89 90 91 92 93      
_Input profile
CTCTAGCCCTGTCTATGGX_XX_XX_XX_XX_X
1._GC-05-119-3-21
CTCTAGCCCTGTCTATGGX_XX_XX_XX_XX_X
2._GC-05-071-2-22
CTCTAGCCCTGTCTATGGX_XX_XX_XX_XX_X
3._GC-05-071-2-22
CTCTAGCCCTGTCTATGGX_XX_XX_XX_XX_X
4._GC-05-071-2-22
CTCTAGCCCTGTCTATGGX_XX_XX_XX_XX_X
5._MO_9
CT__AG__CTGTCT____X_XX_XX_XX_XX_X
6._MO_9
CT__AG__CTGTCT____X_XX_XX_XX_XX_X
7._MO_9
CT__AG__CTGTCT____X_XX_XX_XX_XX_X
8._MO_9
CT__AG__CTGTCT____X_XX_XX_XX_XX_X
9._MO_9
CT__AG__CTGTCT____X_XX_XX_XX_XX_X
10._GC-05-119-3-21
CCCCAACTCCTTTTAAGGX_XX_XX_XX_XX_X
11._GC-05-071-2-22
CCCCAACTCCTTTTAAGGX_XX_XX_XX_XX_X
12._GC-05-119-3-21
CCCCAACTCCTTTTAAGGX_XX_XX_XX_XX_X
13._GC-05-119-3-21
CCCCAACTCCTTTTAAGGX_XX_XX_XX_XX_X
14._GC-05-071-2-22
CCCCAACTCCTTTTAAGGX_XX_XX_XX_XX_X
15._MO_9
CC__AA__CCTTTT____X_XX_XX_XX_XX_X
16._MO_9
CC__AA__CCTTTT____X_XX_XX_XX_XX_X
17._MO_9
CC__AA__CCTTTT____X_XX_XX_XX_XX_X
18._MO_9
CC__AA__CCTTTT____X_XX_XX_XX_XX_X
19._MO_9
CC__AA__CCTTTT____X_XX_XX_XX_XX_X
20._MO_9
CC__AA__CCTTTT____X_XX_XX_XX_XX_X
21._RUQ_1691
CC____CT__TT______X_XX_XX_XX_XX_X
22._RUQ_1691
__GG____GGAAAATTGGX_XX_XX_XX_XX_X

Input profile: MO_9 GC-05-071-2-22

 
Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2 > FP2
 Mars, 2018

1._MO_9 GC-05-119-3-21

identical
93 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 5
Notes: 5
 Mars, 2018

2._MO_9 GC-05-071-2-22

identical
93 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: 4 > FP4
 Mars, 2018

3._MO_9 GC-05-071-2-22

identical
93 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3 > FP3
 Mars, 2018

4._MO_9 GC-05-071-2-22

identical
93 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2 > FP2
 Mars, 2018

5._MO_9

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 5222 2 > FP
 Dapeng Zhang, 2016

6._MO_9

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 5222 2 > FP
 Dapeng Zhang, 2016

7._MO_9

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 5222 3 > FP
 Dapeng Zhang, 2016

8._MO_9

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 5222 4 > FP
 Dapeng Zhang, 2016

9._MO_9

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 5321 5
 Dapeng Zhang, 2016

10._MO_9 GC-05-119-3-21

64.1 %
92 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3 > FP4
 Mars, 2018

11._MO_9 GC-05-071-2-22

64.1 %
92 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1 > FP1
 Mars, 2018

12._MO_9 GC-05-119-3-21

64 %
93 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: 4 > FP3
 Mars, 2018

13._MO_9 GC-05-119-3-21

64 %
93 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2
 Mars, 2018

14._MO_9 GC-05-071-2-22

64 %
93 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 5
Notes: 5
 Mars, 2018

15._MO_9

63.2 %
38 shared markers

International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: Marper D835
 Dapeng Zhang, 2016

16._MO_9

61.8 %
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: 5321 3 > FP
 Dapeng Zhang, 2016

17._MO_9

61.5 %
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 5222 5
 Dapeng Zhang, 2016

18._MO_9

61.5 %
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 5222 1 > FP
 Dapeng Zhang, 2016

19._MO_9

61.5 %
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 5321 2
 Dapeng Zhang, 2016

20._MO_9

61.5 %
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 5321 4 > FP
 Dapeng Zhang, 2016

21._MO_9 RUQ_1691

52.4 %
21 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Lambert Motilal, 2023
Population Assignment: 

22._MO_9 RUQ_1691

38 %
79 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
Notes: Reading_Collection
 Mars, 2018

 


  Key to SNP Markers

1TcSNP1350 2TcSNP534 3TcSNP591 4TcSNP42 5TcSNP418
6TcSNP702 7TcSNP1096 8TcSNP1060 9TcSNP1165 10TcSNP429
11TcSNP75 12TcSNP891 13TcSNP122 14TcSNP316 15TcSNP521
16TcSNP860 17TcSNP1062 18TcSNP836 19TcSNP878 20TcSNP929
21TcSNP413 22TcSNP653 23TcSNP1149 24TcSNP174 25TcSNP32
26TcSNP372 27TcSNP448 28TcSNP872 29TcSNP953 30TcSNP1034
31TcSNP1175 32TcSNP1111 33TcSNP577 34TcSNP90 35TcSNP998
36TcSNP150 37TcSNP28 38TcSNP751 39TcSNP1484 40TcSNP602
41TcSNP561 42TcSNP894 43TcSNP1063 44TcSNP1126 45TcSNP1270
46TcSNP606 47TcSNP329 48TcSNP689 49TcSNP944 50TcSNP1242
51TcSNP1383 52TcSNP547 53TcSNP776 54TcSNP151 55TcSNP1520
56TcSNP799 57TcSNP899 58TcSNP226 59TcSNP1439 60TcSNP1442
61TcSNP193 62TcSNP25 63TcSNP364 64TcSNP144 65TcSNP230
66TcSNP560 67TcSNP723 68TcSNP731 69TcSNP701 70TcSNP1041
71TcSNP645 72TcSNP917 73Tcm003s01336581 74Tcm003s07402719 75Tcm001s00947643
76Tcm006s26664133 77Tcm002s20575712 78TcSNP529 79TcSNP1458 80TcSNP60
81TcSNP430 82TcSNP823 83TcSNP619 84TcSNP994 85TcSNP1144
86TcSNP1156 87TcSNP469 88TcSNP999 89TcSNP242 90TcSNP1253
91TcSNP1414 92TcSNP154 93TcSNP240