SNP Profiles of PA 156 [PER]   View Data

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 Key

 1234567891011121314
_Input profile
AAAACTAAGGGGCCCCCCCCGGTTCTCT
1._GC-05-138-3-40
AAAACTAAGGGGCCCCCCCCGGTTCTCT
2._GC-05-138-3-40
AAAACTAAGGGGCCCCCCCCGGTTCTCT
3._GC-05-138-3-40
AAAACTAAGGGGCCCCCCCCGGTTCTCT
4._GC-05-138-3-40
AAAACTAAGGGGCCCCCCCCGGTTCTCT
5._PA_156_[PER]
AAAACTAA________CCCCGG__CT__
6._PA_156_[PER]
AAAACTAA________CCCCGG__CT__
7._PA_156_[PER]
AAAACTAA________CCCCGG__CT__
8._PA_156_[PER]
AAAACTAA________CCCCGG__CT__
9._PA_156_[PER]
AAAACTAA________CCCCGG__CT__
10._RUQ_1531
____CCCC____CT__CC____TTCC__
11._GC-05-137-3-39
AACCCCCCGGAGCTCCCCCCGGTTCCTT
12._GC-05-137-3-39
AACCCCCCGGAGCTCCCCCCGGTTCCTT
13._GC-05-137-3-39
AACCCCCCGGAGCTCCCCCCGGTTCCTT
14._GC-05-137-3-39
AACCCCCCGGAGCTCCCCCCGGTTCCTT
15._GC-05-137-3-39
AACCCCCCGGAGCTCCCCCCGGTTCCTT
16._PA_156_[PER]
AACCCCCC________CCCCGG__CC__
17._PA_156_[PER]
AACCCCCC________CCCCGG__CC__
18._PA_156_[PER]
AACCCCCC________CCCCGG__CC__
19._PA_156_[PER]
AACCCCCC________CCCCGG__CC__
20._PA_156_[PER]
AACCCCCC________CCCCGG__CC__
21._PA_156_[PER]
AACCCCCC________CCCCGG__CC__
22._RUQ_1531
AACCCCCC________CCCCGG__CC__
23._PA_156_[PER]
AACCCCCC________CCCCGG__CC__
24._PA156[PER]
______CC________CC______CC__
25._RUQ_1531
______CC____CT______________
26._RUQ_1531
AACC__CCGGAG__GGGG__GGAAGGAA
 1516171819202122232425262728
_Input profile
AACCAAGGCCCGCTAATTGGATAACCCG
1._GC-05-138-3-40
AACCAAGGCCCGCTAATTGGATAACCCG
2._GC-05-138-3-40
AACCAAGGCCCGCTAATTGGATAACCCG
3._GC-05-138-3-40
AACCAAGGCCCGCTAATTGGATAACCCG
4._GC-05-138-3-40
AACCAAGGCCCGCTAATTGGATAACCCG
5._PA_156_[PER]
____AA____CG________ATAA__CG
6._PA_156_[PER]
____AA____CG________ATAA__CG
7._PA_156_[PER]
____AA____CG________ATAA__CG
8._PA_156_[PER]
____AA____CG________ATAA__CG
9._PA_156_[PER]
____AA____CG________ATAA__CG
10._RUQ_1531
________CC________GG__AACCGG
11._GC-05-137-3-39
AACCGG__CCCGTTAATTGGATAACCGG
12._GC-05-137-3-39
AACCGGCCCCCGTTAATTGGATAACCGG
13._GC-05-137-3-39
AACCGGCCCCCGTTAATTGGATAACCGG
14._GC-05-137-3-39
AACCGGCCCCCGTTAATTGGATAACCGG
15._GC-05-137-3-39
AACCGGCCCCCGTTAATTGGATAACCGG
16._PA_156_[PER]
____GG____CG________ATAA__GG
17._PA_156_[PER]
____GG____CG________ATAA__GG
18._PA_156_[PER]
____GG____CG________ATAA__GG
19._PA_156_[PER]
____GG____CG________ATAA__GG
20._PA_156_[PER]
____GG____CG________ATAA__GG
21._PA_156_[PER]
____GG____CG________ATAA__GG
22._RUQ_1531
____GG____CG________ATAA__GG
23._PA_156_[PER]
____GG____CG________ATAA__GG
24._PA156[PER]
________GG__TT____GG__AACCCC
25._RUQ_1531
____GGTT__________________GG
26._RUQ_1531
TTCCGGGG__CGAAAAAAGGATAAGGCC
 2930313233343536373839404142
_Input profile
AATTGGAGCGCCAGTTGGTTAGCTAGCC
1._GC-05-138-3-40
AATTGGAGCGCCAGTTGGTTAGCTAGCC
2._GC-05-138-3-40
AATTGGAGCGCCAGTTGGTTAGCTAGCC
3._GC-05-138-3-40
AATTGGAGCGCCAGTTGGTTAGCTAGCC
4._GC-05-138-3-40
AATTGGAGCGCCAGTTGGTTAGCTAGCC
5._PA_156_[PER]
AA______CG__AGTT____AG______
6._PA_156_[PER]
AA______CG__AGTT____AG______
7._PA_156_[PER]
AA______CG__AGTT____AG______
8._PA_156_[PER]
AA______CG__AGTT____AG______
9._PA_156_[PER]
AA______CG__AGTT____AG______
10._RUQ_1531
______GGCGCCAGGG____AGTT____
11._GC-05-137-3-39
AATTGTGGCGCCAGGGGGTTAGTTGGCC
12._GC-05-137-3-39
AATTGTGGCGCCAGGGGGTTAGTTAGCC
13._GC-05-137-3-39
AATTGTGGCGCCAGGGGGTTAGTTGGCC
14._GC-05-137-3-39
AATTGTGGCGCCAGGGGGTTAGTTGGCC
15._GC-05-137-3-39
AATTGTGGCGCCAGGGGGTTAGTTGGCC
16._PA_156_[PER]
AA______CG__AGGG____AG______
17._PA_156_[PER]
AA______CG__AGGG____AG______
18._PA_156_[PER]
AA______CG__AGGG____AG______
19._PA_156_[PER]
AA______CG__AGGG____AG______
20._PA_156_[PER]
AA______CG__AGGG____AG______
21._PA_156_[PER]
AA______CG__AGGG____AG______
22._RUQ_1531
AA______CG__AGGG____AG______
23._PA_156_[PER]
AA______CG__AGGG____AG______
24._PA156[PER]
______GGCG________TT__TT____
25._RUQ_1531
________CG__AG________TT____
26._RUQ_1531
AAAAACGGCGCCAGCCCCAAAGAAGGGG
 4344454647484950515253545556
_Input profile
GGTTCTAAGGAACCCCGGGGTTTTCTTT
1._GC-05-138-3-40
GGTTCTAAGGAACCCCGGGGTTTTCTTT
2._GC-05-138-3-40
GGTTCTAAGGAACCCCGGGGTTTTCTTT
3._GC-05-138-3-40
GGTTCTAAGGAACCCCGGGGTTTTCTTT
4._GC-05-138-3-40
GGTTCTAAGGAACCCCGGGGTTTTCTTT
5._PA_156_[PER]
____CT__________________CT__
6._PA_156_[PER]
____CT__________________CT__
7._PA_156_[PER]
____CT__________________CT__
8._PA_156_[PER]
____CT__________________CT__
9._PA_156_[PER]
____CT__________________CT__
10._RUQ_1531
GGTT____GG____________TT__TT
11._GC-05-137-3-39
GGTTTTAAGGAACCCCGGAGGGTTCCTT
12._GC-05-137-3-39
GGTTTTAAGGAACCCCGGAGGGTTCCTT
13._GC-05-137-3-39
GGTTTTAAGGAACCCCGGAGGGTTCCTT
14._GC-05-137-3-39
GGTTTTAAGGAACCCCGGAGGGTTCCTT
15._GC-05-137-3-39
GGTTTTAAGGAACCCCGGAGGGTTCCTT
16._PA_156_[PER]
____TT__________________CC__
17._PA_156_[PER]
____TT__________________CC__
18._PA_156_[PER]
____TT__________________CC__
19._PA_156_[PER]
____TT__________________CC__
20._PA_156_[PER]
____TT__________________CC__
21._PA_156_[PER]
____TT__________________CC__
22._RUQ_1531
____TT__________________CC__
23._PA_156_[PER]
____TT__________________CC__
24._PA156[PER]
__TT__AA____________________
25._RUQ_1531
________GG__________________
26._RUQ_1531
CC__AA__GGAAGG__GGAGCCAAGGAA
 5758596061626364656667686970
_Input profile
AACCCTCTAAGGGGAAAAGTGGGGTTCC
1._GC-05-138-3-40
AACCCTCTAAGGGGAAAAGTGGGGTTCC
2._GC-05-138-3-40
AACCCTCTAAGGGGAAAAGTGGGGTTCC
3._GC-05-138-3-40
AACCCTCTAAGGGGAAAAGTGGGGTTCC
4._GC-05-138-3-40
AACCCTCTAAGGGGAAAAGTGGGGTTCC
5._PA_156_[PER]
__CC__CTAAGG__AAAAGTGG______
6._PA_156_[PER]
__CC__CTAAGG__AAAAGTGG______
7._PA_156_[PER]
__CC__CTAAGG__AAAAGTGG______
8._PA_156_[PER]
__CC__CTAAGG__AAAAGTGG______
9._PA_156_[PER]
__CC__CTAAGG__AAAAGTGG______
10._RUQ_1531
GGCCCTCTAA__GGACAATTGGGG____
11._GC-05-137-3-39
AGCCCTCTAAGGGGACAATTGGGGCTCC
12._GC-05-137-3-39
AGCCCTCTAAGGGGACAATTGGGGCTCC
13._GC-05-137-3-39
AGCCCTCTAAGGGGACAATTGGGGCTCC
14._GC-05-137-3-39
AGCCCTCTAAGGGGACAATTGGGGCTCC
15._GC-05-137-3-39
AGCCCTCTAAGGGGACAATTGGGGCTCC
16._PA_156_[PER]
______CTAAGG__ACAATTGG______
17._PA_156_[PER]
__CC__CTAAGG__ACAATTGG______
18._PA_156_[PER]
__CC__CTAAGG__ACAATTGG______
19._PA_156_[PER]
__CC__CTAAGG__ACAATTGG______
20._PA_156_[PER]
__CC__CTAAGG__ACAATTGG______
21._PA_156_[PER]
__CC__CTAAGG__ACAATTGG______
22._RUQ_1531
__CC__CTAAGG__ACAATTGG______
23._PA_156_[PER]
__CC__CTAAGG__ACAATTGG______
24._PA156[PER]
__GGCT__AA__GGACAA________CC
25._RUQ_1531
AG____________ACAA__GGGG____
26._RUQ_1531
AGGGAGAGAAGGGGACAAAACCGG____
 7172737475767778798081828384
_Input profile
AGCTAAAAACAAAACCGGCCATAACTTT
1._GC-05-138-3-40
AGCTAAAAACAAAACCGGCCATAACTTT
2._GC-05-138-3-40
AGCTAAAAACAAAACCGGCCATAACTTT
3._GC-05-138-3-40
AGCTAAAAACAAAACCGGCCATAACTTT
4._GC-05-138-3-40
AGCTAAAAACAAAACCGGCCATAACTTT
5._PA_156_[PER]
AGCT__________CCGG______CTTT
6._PA_156_[PER]
AGCT__________CCGG______CTTT
7._PA_156_[PER]
AGCT__________CCGG______CTTT
8._PA_156_[PER]
AGCT__________CCGG______CTTT
9._PA_156_[PER]
AGCT__________CCGG______CTTT
10._RUQ_1531
______________ACGG____ACTT__
11._GC-05-137-3-39
AATTCCAGAAAAAGACGGCCATACTTCC
12._GC-05-137-3-39
AATTCCAGAAAAAGACGGCCATACTTCC
13._GC-05-137-3-39
AATTCCAGAAAAAGACGGCCATACTTCC
14._GC-05-137-3-39
AATTCCAGAAAAAGACGGCCATACTTCC
15._GC-05-137-3-39
AATTCCAGAAAAAGACGGCCATACTTCC
16._PA_156_[PER]
AATT__________ACGG______TTCC
17._PA_156_[PER]
AATT__________ACGG______TTCC
18._PA_156_[PER]
AATT__________ACGG______TTCC
19._PA_156_[PER]
AATT__________ACGG______TTCC
20._PA_156_[PER]
AATT__________ACGG______TTCC
21._PA_156_[PER]
AATT__________ACGG______TTCC
22._RUQ_1531
AATT__________ACGG______TTCC
23._PA_156_[PER]
AATT__________ACGG______TTCC
24._PA156[PER]
________________CC________CC
25._RUQ_1531
AA____________ACGG____AC____
26._RUQ_1531
__AACCAGAAAA__ACCCGGATACAAGG
 858687888990919293     
_Input profile
TTCCAATTCTTTTTATGGX_XX_XX_XX_XX_X
1._GC-05-138-3-40
TTCCAATTCTTTTTATGGX_XX_XX_XX_XX_X
2._GC-05-138-3-40
TTCCAATTCTTTTTATGGX_XX_XX_XX_XX_X
3._GC-05-138-3-40
TTCCAATTCTTTTTATGGX_XX_XX_XX_XX_X
4._GC-05-138-3-40
TTCCAATTCTTTTTATGGX_XX_XX_XX_XX_X
5._PA_156_[PER]
TT__AA__CTTTTT____X_XX_XX_XX_XX_X
6._PA_156_[PER]
TT__AA__CTTTTT____X_XX_XX_XX_XX_X
7._PA_156_[PER]
TT__AA__CTTTTT____X_XX_XX_XX_XX_X
8._PA_156_[PER]
TT__AA__CTTTTT____X_XX_XX_XX_XX_X
9._PA_156_[PER]
TT__AA__CTTTTT____X_XX_XX_XX_XX_X
10._RUQ_1531
____AA__CCTT______X_XX_XX_XX_XX_X
11._GC-05-137-3-39
CCCTAACTCCTTTTAAGGX_XX_XX_XX_XX_X
12._GC-05-137-3-39
CCCTAACTCCTTTTAAGGX_XX_XX_XX_XX_X
13._GC-05-137-3-39
CCCTAACTCCTTTTAAGGX_XX_XX_XX_XX_X
14._GC-05-137-3-39
CCCTAACTCCTTTTAAGGX_XX_XX_XX_XX_X
15._GC-05-137-3-39
CCCTAACTCCTTTTAAGGX_XX_XX_XX_XX_X
16._PA_156_[PER]
____AA__CCTTTT____X_XX_XX_XX_XX_X
17._PA_156_[PER]
CC__AA__CCTTTT____X_XX_XX_XX_XX_X
18._PA_156_[PER]
CC__AA__CCTTTT____X_XX_XX_XX_XX_X
19._PA_156_[PER]
CC__AA__CCTTTT____X_XX_XX_XX_XX_X
20._PA_156_[PER]
CC__AA__CCTTTT____X_XX_XX_XX_XX_X
21._PA_156_[PER]
CC__AA__CCTTTT____X_XX_XX_XX_XX_X
22._RUQ_1531
CC__AA__CCTTTT____X_XX_XX_XX_XX_X
23._PA_156_[PER]
CC__AA__CCTTTT____X_XX_XX_XX_XX_X
24._PA156[PER]
__________________X_XX_XX_XX_XX_X
25._RUQ_1531
CC____CT__TT______X_XX_XX_XX_XX_X
26._RUQ_1531
__AG____GGAAAATTGGX_XX_XX_XX_XX_X

Input profile: PA_156_[PER] GC-05-138-3-40

 
Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2 > FP2
 Mars, 2018

1._PA_156_[PER] GC-05-138-3-40

identical
93 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1 > FP1
 Mars, 2018

2._PA_156_[PER] GC-05-138-3-40

identical
93 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3 > FP3
 Mars, 2018

3._PA_156_[PER] GC-05-138-3-40

identical
93 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: 4
 Mars, 2018

4._PA_156_[PER] GC-05-138-3-40

identical
93 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 5
Notes: 5
 Mars, 2018

5._PA_156_[PER]

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 5340 4
 Dapeng Zhang, 2016

6._PA_156_[PER]

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 5340 5
 Dapeng Zhang, 2016

7._PA_156_[PER]

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 5340 1 > FP
 Dapeng Zhang, 2016

8._PA_156_[PER]

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 5340 2 > FP
 Dapeng Zhang, 2016

9._PA_156_[PER]

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 5340 3 > FP
 Dapeng Zhang, 2016

10._PA_156_[PER] RUQ_1531

78 %
41 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

11._PA_156_[PER] GC-05-137-3-39

75 %
92 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 5
Notes: 5 > FP4
 Mars, 2018

12._PA_156_[PER] GC-05-137-3-39

74.7 %
93 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3 > FP2
 Mars, 2018

13._PA_156_[PER] GC-05-137-3-39

74.2 %
93 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: 4 > FP3
 Mars, 2018

14._PA_156_[PER] GC-05-137-3-39

74.2 %
93 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2
 Mars, 2018

15._PA_156_[PER] GC-05-137-3-39

74.2 %
93 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1
 Mars, 2018

16._PA_156_[PER]

70.3 %
37 shared markers

International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: 5A D295 T1
 Dapeng Zhang, 2016

17._PA_156_[PER]

69.2 %
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 5339 1
 Dapeng Zhang, 2016
Population Assignment: 
 Dapeng Zhang, 2016

18._PA_156_[PER]

69.2 %
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 5339 2
 Dapeng Zhang, 2016

19._PA_156_[PER]

69.2 %
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 5339 3 > FP
 Dapeng Zhang, 2016

20._PA_156_[PER]

69.2 %
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 5339 4 > FP
 Dapeng Zhang, 2016

21._PA_156_[PER]

69.2 %
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 5339 5 > FP
 Dapeng Zhang, 2016

22._PA_156_[PER] RUQ_1531

69.2 %
39 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2016

23._PA_156_[PER]

69.2 %
39 shared markers

Malaysian Cocoa Board (MCB), Malaysia
Location: Plot 1 - Row1 C0184 28
 Dapeng Zhang, 2016

24._PA_156_[PER] PA156[PER]

66.7 %
24 shared markers

Center for Forestry Research and Technology Transfer, Vietnam
Location: CEFORTT
 Jocelyn De Wever et al., 2019

25._PA_156_[PER] RUQ_1531

59.5 %
21 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Lambert Motilal, 2023

26._PA_156_[PER] RUQ_1531

40.5 %
79 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
Notes: Reading_Collection
 Mars, 2018

 


  Key to SNP Markers

1TcSNP1075 2TcSNP1350 3TcSNP534 4TcSNP591 5TcSNP42
6TcSNP418 7TcSNP702 8TcSNP1096 9TcSNP1060 10TcSNP1165
11TcSNP429 12TcSNP75 13TcSNP891 14TcSNP122 15TcSNP316
16TcSNP521 17TcSNP1062 18TcSNP836 19TcSNP878 20TcSNP929
21TcSNP413 22TcSNP653 23TcSNP1149 24TcSNP174 25TcSNP32
26TcSNP372 27TcSNP448 28TcSNP872 29TcSNP953 30TcSNP1034
31TcSNP1175 32TcSNP1111 33TcSNP577 34TcSNP90 35TcSNP998
36TcSNP150 37TcSNP28 38TcSNP751 39TcSNP1484 40TcSNP602
41TcSNP561 42TcSNP894 43TcSNP1063 44TcSNP1126 45TcSNP1270
46TcSNP606 47TcSNP329 48TcSNP689 49TcSNP944 50TcSNP1242
51TcSNP1383 52TcSNP547 53TcSNP776 54TcSNP1309 55TcSNP1520
56TcSNP799 57TcSNP899 58TcSNP226 59TcSNP1439 60TcSNP1442
61TcSNP193 62TcSNP25 63TcSNP364 64TcSNP144 65TcSNP230
66TcSNP560 67TcSNP723 68TcSNP731 69TcSNP701 70TcSNP1041
71TcSNP645 72TcSNP917 73Tcm003s01336581 74Tcm003s07402719 75Tcm001s00947643
76Tcm006s26664133 77Tcm002s20575712 78TcSNP529 79TcSNP1458 80TcSNP60
81TcSNP430 82TcSNP823 83TcSNP619 84TcSNP994 85TcSNP1144
86TcSNP1156 87TcSNP469 88TcSNP999 89TcSNP242 90TcSNP1253
91TcSNP1414 92TcSNP154 93TcSNP240