SNP Profiles of PA 156 [PER]   View Data

 Show/Hide Profiles

 Key

 1234567891011121314
_Input profile
AACCCCCCGGAGCTCCCCCCGGTTCCTT
1._GC-05-137-3-39
AACCCCCCGGAGCTCCCCCCGGTTCCTT
2._GC-05-137-3-39
AACCCCCCGGAGCTCCCCCCGGTTCCTT
3._GC-05-137-3-39
AACCCCCCGGAGCTCCCCCCGGTTCCTT
4._PA_156_[PER]
AACCCCCC________CCCCGG__CC__
5._PA_156_[PER]
AACCCCCC________CCCCGG__CC__
6._PA_156_[PER]
AACCCCCC________CCCCGG__CC__
7._PA_156_[PER]
AACCCCCC________CCCCGG__CC__
8._RUQ_1531
AACCCCCC________CCCCGG__CC__
9._PA_156_[PER]
AACCCCCC________CCCCGG__CC__
10._PA_156_[PER]
AACCCCCC________CCCCGG__CC__
11._PA_156_[PER]
AACCCCCC________CCCCGG__CC__
12._RUQ_1531
______CC____CT______________
13._GC-05-137-3-39
AACCCCCCGGAGCTCCCCCCGGTTCCTT
14._RUQ_1531
____CCCC____CT__CC____TTCC__
15._PA156[PER]
______CC________CC______CC__
16._GC-05-138-3-40
AAAACTAAGGGGCCCCCCCCGGTTCTCT
17._GC-05-138-3-40
AAAACTAAGGGGCCCCCCCCGGTTCTCT
18._GC-05-138-3-40
AAAACTAAGGGGCCCCCCCCGGTTCTCT
19._GC-05-138-3-40
AAAACTAAGGGGCCCCCCCCGGTTCTCT
20._GC-05-138-3-40
AAAACTAAGGGGCCCCCCCCGGTTCTCT
21._PA_156_[PER]
AAAACTAA________CCCCGG__CT__
22._PA_156_[PER]
AAAACTAA________CCCCGG__CT__
23._PA_156_[PER]
AAAACTAA________CCCCGG__CT__
24._PA_156_[PER]
AAAACTAA________CCCCGG__CT__
25._PA_156_[PER]
AAAACTAA________CCCCGG__CT__
26._RUQ_1531
AACC__CCGGAG__GGGG__GGAAGGAA
 1516171819202122232425262728
_Input profile
AACCGGCCCGTTAATTGGATAACCGGAA
1._GC-05-137-3-39
AACCGGCCCGTTAATTGGATAACCGGAA
2._GC-05-137-3-39
AACCGGCCCGTTAATTGGATAACCGGAA
3._GC-05-137-3-39
AACCGGCCCGTTAATTGGATAACCGGAA
4._PA_156_[PER]
____GG__CG________ATAA__GGAA
5._PA_156_[PER]
____GG__CG________ATAA__GGAA
6._PA_156_[PER]
____GG__CG________ATAA__GGAA
7._PA_156_[PER]
____GG__CG________ATAA__GGAA
8._RUQ_1531
____GG__CG________ATAA__GGAA
9._PA_156_[PER]
____GG__CG________ATAA__GGAA
10._PA_156_[PER]
____GG__CG________ATAA__GGAA
11._PA_156_[PER]
____GG__CG________ATAA__GGAA
12._RUQ_1531
____GG__________________GG__
13._GC-05-137-3-39
AACCGGCCCGTTAATTGGATAACCGGAA
14._RUQ_1531
______CC________GG__AACCGG__
15._PA156[PER]
______GG__TT____GG__AACCCC__
16._GC-05-138-3-40
AACCAACCCGCTAATTGGATAACCCGAA
17._GC-05-138-3-40
AACCAACCCGCTAATTGGATAACCCGAA
18._GC-05-138-3-40
AACCAACCCGCTAATTGGATAACCCGAA
19._GC-05-138-3-40
AACCAACCCGCTAATTGGATAACCCGAA
20._GC-05-138-3-40
AACCAACCCGCTAATTGGATAACCCGAA
21._PA_156_[PER]
____AA__CG________ATAA__CGAA
22._PA_156_[PER]
____AA__CG________ATAA__CGAA
23._PA_156_[PER]
____AA__CG________ATAA__CGAA
24._PA_156_[PER]
____AA__CG________ATAA__CGAA
25._PA_156_[PER]
____AA__CG________ATAA__CGAA
26._RUQ_1531
TTCCGG__CGAAAAAAGGATAAGGCCAA
 2930313233343536373839404142
_Input profile
TTGTGGCGCCAGGGGGTTAGTTGGCCGG
1._GC-05-137-3-39
TTGTGGCGCCAGGGGGTTAGTTGGCCGG
2._GC-05-137-3-39
TTGTGGCGCCAGGGGGTTAGTTGGCCGG
3._GC-05-137-3-39
TTGTGGCGCCAGGGGGTTAGTTGGCCGG
4._PA_156_[PER]
______CG__AGGG____AG________
5._PA_156_[PER]
______CG__AGGG____AG________
6._PA_156_[PER]
______CG__AGGG____AG________
7._PA_156_[PER]
______CG__AGGG____AG________
8._RUQ_1531
______CG__AGGG____AG________
9._PA_156_[PER]
______CG__AGGG____AG________
10._PA_156_[PER]
______CG__AGGG____AG________
11._PA_156_[PER]
______CG__AGGG____AG________
12._RUQ_1531
______CG__AG________TT______
13._GC-05-137-3-39
TTGTGGCGCCAGGGGGTTAGTTAGCCGG
14._RUQ_1531
____GGCGCCAGGG____AGTT____GG
15._PA156[PER]
____GGCG________TT__TT______
16._GC-05-138-3-40
TTGGAGCGCCAGTTGGTTAGCTAGCCGG
17._GC-05-138-3-40
TTGGAGCGCCAGTTGGTTAGCTAGCCGG
18._GC-05-138-3-40
TTGGAGCGCCAGTTGGTTAGCTAGCCGG
19._GC-05-138-3-40
TTGGAGCGCCAGTTGGTTAGCTAGCCGG
20._GC-05-138-3-40
TTGGAGCGCCAGTTGGTTAGCTAGCCGG
21._PA_156_[PER]
______CG__AGTT____AG________
22._PA_156_[PER]
______CG__AGTT____AG________
23._PA_156_[PER]
______CG__AGTT____AG________
24._PA_156_[PER]
______CG__AGTT____AG________
25._PA_156_[PER]
______CG__AGTT____AG________
26._RUQ_1531
AAACGGCGCCAGCCCCAAAGAAGGGGCC
 4344454647484950515253545556
_Input profile
TTTTAAGGAACCCCGGAGGGTTCCCCTT
1._GC-05-137-3-39
TTTTAAGGAACCCCGGAGGGTTCCCCTT
2._GC-05-137-3-39
TTTTAAGGAACCCCGGAGGGTTCCCCTT
3._GC-05-137-3-39
TTTTAAGGAACCCCGGAGGGTT__CCTT
4._PA_156_[PER]
__TT__________________CCCC__
5._PA_156_[PER]
__TT__________________CCCC__
6._PA_156_[PER]
__TT__________________CCCC__
7._PA_156_[PER]
__TT__________________CCCC__
8._RUQ_1531
__TT__________________CCCC__
9._PA_156_[PER]
__TT__________________CCCC__
10._PA_156_[PER]
__TT____________________CC__
11._PA_156_[PER]
__TT__________________CCCC__
12._RUQ_1531
______GG____________________
13._GC-05-137-3-39
TTTTAAGGAACCCCGGAGGGTTCCCCTT
14._RUQ_1531
TT____GG____________TTCC__TT
15._PA156[PER]
TT__AA________________CC____
16._GC-05-138-3-40
TTCTAAGGAACCCCGGGGTTTTCCCTTT
17._GC-05-138-3-40
TTCTAAGGAACCCCGGGGTTTTCCCTTT
18._GC-05-138-3-40
TTCTAAGGAACCCCGGGGTTTTCCCTTT
19._GC-05-138-3-40
TTCTAAGGAACCCCGGGGTTTTCCCTTT
20._GC-05-138-3-40
TTCTAAGGAACCCCGGGGTTTT__CTTT
21._PA_156_[PER]
__CT__________________CCCT__
22._PA_156_[PER]
__CT__________________CCCT__
23._PA_156_[PER]
__CT__________________CCCT__
24._PA_156_[PER]
__CT__________________CCCT__
25._PA_156_[PER]
__CT____________________CT__
26._RUQ_1531
__AA__GGAAGG__GGAGCCAAGGGGAA
 5758596061626364656667686970
_Input profile
AGCCCTCTAAGGGGACAATTGGGGCTCC
1._GC-05-137-3-39
AGCCCTCTAAGGGGACAATTGGGGCTCC
2._GC-05-137-3-39
AGCCCTCTAAGGGGACAATTGGGGCTCC
3._GC-05-137-3-39
AGCCCTCTAAGGGGACAATTGGGGCTCC
4._PA_156_[PER]
__CC__CTAAGG__ACAATTGG______
5._PA_156_[PER]
__CC__CTAAGG__ACAATTGG______
6._PA_156_[PER]
__CC__CTAAGG__ACAATTGG______
7._PA_156_[PER]
__CC__CTAAGG__ACAATTGG______
8._RUQ_1531
__CC__CTAAGG__ACAATTGG______
9._PA_156_[PER]
__CC__CTAAGG__ACAATTGG______
10._PA_156_[PER]
__CC__CTAAGG__ACAATTGG______
11._PA_156_[PER]
______CTAAGG__ACAATTGG______
12._RUQ_1531
AG____________ACAA__GGGG____
13._GC-05-137-3-39
AGCCCTCTAAGGGGACAATTGGGGCTCC
14._RUQ_1531
GGCCCTCTAA__GGACAATTGGGG____
15._PA156[PER]
__GGCT__AA__GGACAA________CC
16._GC-05-138-3-40
AACCCTCTAAGGGGAAAAGTGGGGTTCC
17._GC-05-138-3-40
AACCCTCTAAGGGGAAAAGTGGGGTTCC
18._GC-05-138-3-40
AACCCTCTAAGGGGAAAAGTGGGGTTCC
19._GC-05-138-3-40
AACCCTCTAAGGGGAAAAGTGGGGTTCC
20._GC-05-138-3-40
AACCCTCTAAGGGGAAAAGTGGGGTTCC
21._PA_156_[PER]
__CC__CTAAGG__AAAAGTGG______
22._PA_156_[PER]
__CC__CTAAGG__AAAAGTGG______
23._PA_156_[PER]
__CC__CTAAGG__AAAAGTGG______
24._PA_156_[PER]
__CC__CTAAGG__AAAAGTGG______
25._PA_156_[PER]
__CC__CTAAGG__AAAAGTGG______
26._RUQ_1531
AGGGAGAGAAGGGGACAAAACCGG____
 7172737475767778798081828384
_Input profile
AATTCCAGAAAAAGACGGCCATACTTCC
1._GC-05-137-3-39
AATTCCAGAAAAAGACGGCCATACTTCC
2._GC-05-137-3-39
AATTCCAGAAAAAGACGGCCATACTTCC
3._GC-05-137-3-39
AATTCCAGAAAAAGACGGCCATACTTCC
4._PA_156_[PER]
AATT__________ACGG______TTCC
5._PA_156_[PER]
AATT__________ACGG______TTCC
6._PA_156_[PER]
AATT__________ACGG______TTCC
7._PA_156_[PER]
AATT__________ACGG______TTCC
8._RUQ_1531
AATT__________ACGG______TTCC
9._PA_156_[PER]
AATT__________ACGG______TTCC
10._PA_156_[PER]
AATT__________ACGG______TTCC
11._PA_156_[PER]
AATT__________ACGG______TTCC
12._RUQ_1531
AA____________ACGG____AC____
13._GC-05-137-3-39
AATTCCAGAAAAAGACGGCCATACTTCC
14._RUQ_1531
______________ACGG____ACTT__
15._PA156[PER]
________________CC________CC
16._GC-05-138-3-40
AGCTAAAAACAAAACCGGCCATAACTTT
17._GC-05-138-3-40
AGCTAAAAACAAAACCGGCCATAACTTT
18._GC-05-138-3-40
AGCTAAAAACAAAACCGGCCATAACTTT
19._GC-05-138-3-40
AGCTAAAAACAAAACCGGCCATAACTTT
20._GC-05-138-3-40
AGCTAAAAACAAAACCGGCCATAACTTT
21._PA_156_[PER]
AGCT__________CCGG______CTTT
22._PA_156_[PER]
AGCT__________CCGG______CTTT
23._PA_156_[PER]
AGCT__________CCGG______CTTT
24._PA_156_[PER]
AGCT__________CCGG______CTTT
25._PA_156_[PER]
AGCT__________CCGG______CTTT
26._RUQ_1531
__AACCAGAAAA__ACCCGGATACAAGG
 858687888990919293     
_Input profile
CCCTAACTCCTTTTAAGGX_XX_XX_XX_XX_X
1._GC-05-137-3-39
CCCTAACTCCTTTTAAGGX_XX_XX_XX_XX_X
2._GC-05-137-3-39
CCCTAACTCCTTTTAAGGX_XX_XX_XX_XX_X
3._GC-05-137-3-39
CCCTAACTCCTTTTAAGGX_XX_XX_XX_XX_X
4._PA_156_[PER]
CC__AA__CCTTTT____X_XX_XX_XX_XX_X
5._PA_156_[PER]
CC__AA__CCTTTT____X_XX_XX_XX_XX_X
6._PA_156_[PER]
CC__AA__CCTTTT____X_XX_XX_XX_XX_X
7._PA_156_[PER]
CC__AA__CCTTTT____X_XX_XX_XX_XX_X
8._RUQ_1531
CC__AA__CCTTTT____X_XX_XX_XX_XX_X
9._PA_156_[PER]
CC__AA__CCTTTT____X_XX_XX_XX_XX_X
10._PA_156_[PER]
CC__AA__CCTTTT____X_XX_XX_XX_XX_X
11._PA_156_[PER]
____AA__CCTTTT____X_XX_XX_XX_XX_X
12._RUQ_1531
CC____CT__TT______X_XX_XX_XX_XX_X
13._GC-05-137-3-39
CCCTAACTCCTTTTAAGGX_XX_XX_XX_XX_X
14._RUQ_1531
____AA__CCTT______X_XX_XX_XX_XX_X
15._PA156[PER]
__________________X_XX_XX_XX_XX_X
16._GC-05-138-3-40
TTCCAATTCTTTTTATGGX_XX_XX_XX_XX_X
17._GC-05-138-3-40
TTCCAATTCTTTTTATGGX_XX_XX_XX_XX_X
18._GC-05-138-3-40
TTCCAATTCTTTTTATGGX_XX_XX_XX_XX_X
19._GC-05-138-3-40
TTCCAATTCTTTTTATGGX_XX_XX_XX_XX_X
20._GC-05-138-3-40
TTCCAATTCTTTTTATGGX_XX_XX_XX_XX_X
21._PA_156_[PER]
TT__AA__CTTTTT____X_XX_XX_XX_XX_X
22._PA_156_[PER]
TT__AA__CTTTTT____X_XX_XX_XX_XX_X
23._PA_156_[PER]
TT__AA__CTTTTT____X_XX_XX_XX_XX_X
24._PA_156_[PER]
TT__AA__CTTTTT____X_XX_XX_XX_XX_X
25._PA_156_[PER]
TT__AA__CTTTTT____X_XX_XX_XX_XX_X
26._RUQ_1531
__AG____GGAAAATTGGX_XX_XX_XX_XX_X

Input profile: PA_156_[PER] GC-05-137-3-39

 
Mars Center for Cocoa Science, Brazil
Location: Tree: 5
Notes: 5 > FP4
 Mars, 2018

1._PA_156_[PER] GC-05-137-3-39

identical
93 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: 4 > FP3
 Mars, 2018

2._PA_156_[PER] GC-05-137-3-39

identical
93 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2
 Mars, 2018

3._PA_156_[PER] GC-05-137-3-39

identical
92 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1
 Mars, 2018

4._PA_156_[PER]

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 5339 2
 Dapeng Zhang, 2016

5._PA_156_[PER]

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 5339 3 > FP
 Dapeng Zhang, 2016

6._PA_156_[PER]

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 5339 4 > FP
 Dapeng Zhang, 2016

7._PA_156_[PER]

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 5339 5 > FP
 Dapeng Zhang, 2016

8._PA_156_[PER] RUQ_1531

identical
40 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2016

9._PA_156_[PER]

identical
40 shared markers

Malaysian Cocoa Board (MCB), Malaysia
Location: Plot 1 - Row1 C0184 28
 Dapeng Zhang, 2016

10._PA_156_[PER]

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 5339 1
 Dapeng Zhang, 2016
Population Assignment: 
 Dapeng Zhang, 2016

11._PA_156_[PER]

identical
38 shared markers

International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: 5A D295 T1
 Dapeng Zhang, 2016

12._PA_156_[PER] RUQ_1531

identical
20 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Lambert Motilal, 2023

13._PA_156_[PER] GC-05-137-3-39

99.5 %
93 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3 > FP2
 Mars, 2018

14._PA_156_[PER] RUQ_1531

98.8 %
42 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

15._PA_156_[PER] PA156[PER]

84 %
25 shared markers

Center for Forestry Research and Technology Transfer, Vietnam
Location: CEFORTT
 Jocelyn De Wever et al., 2019

16._PA_156_[PER] GC-05-138-3-40

75.3 %
93 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1 > FP1
 Mars, 2018

17._PA_156_[PER] GC-05-138-3-40

75.3 %
93 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3 > FP3
 Mars, 2018

18._PA_156_[PER] GC-05-138-3-40

75.3 %
93 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: 4
 Mars, 2018

19._PA_156_[PER] GC-05-138-3-40

75.3 %
93 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 5
Notes: 5
 Mars, 2018

20._PA_156_[PER] GC-05-138-3-40

75 %
92 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2 > FP2
 Mars, 2018

21._PA_156_[PER]

70 %
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 5340 4
 Dapeng Zhang, 2016

22._PA_156_[PER]

70 %
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 5340 5
 Dapeng Zhang, 2016

23._PA_156_[PER]

70 %
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 5340 1 > FP
 Dapeng Zhang, 2016

24._PA_156_[PER]

70 %
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 5340 3 > FP
 Dapeng Zhang, 2016

25._PA_156_[PER]

69.2 %
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 5340 2 > FP
 Dapeng Zhang, 2016

26._PA_156_[PER] RUQ_1531

49.4 %
79 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
Notes: Reading_Collection
 Mars, 2018

 


  Key to SNP Markers

1TcSNP1075 2TcSNP1350 3TcSNP534 4TcSNP591 5TcSNP42
6TcSNP418 7TcSNP702 8TcSNP1096 9TcSNP1060 10TcSNP1165
11TcSNP429 12TcSNP75 13TcSNP891 14TcSNP122 15TcSNP316
16TcSNP521 17TcSNP1062 18TcSNP878 19TcSNP929 20TcSNP413
21TcSNP653 22TcSNP1149 23TcSNP174 24TcSNP32 25TcSNP372
26TcSNP448 27TcSNP872 28TcSNP953 29TcSNP1034 30TcSNP1175
31TcSNP1111 32TcSNP577 33TcSNP90 34TcSNP998 35TcSNP150
36TcSNP28 37TcSNP751 38TcSNP1484 39TcSNP602 40TcSNP561
41TcSNP894 42TcSNP1063 43TcSNP1126 44TcSNP1270 45TcSNP606
46TcSNP329 47TcSNP689 48TcSNP944 49TcSNP1242 50TcSNP1383
51TcSNP547 52TcSNP776 53TcSNP1309 54TcSNP151 55TcSNP1520
56TcSNP799 57TcSNP899 58TcSNP226 59TcSNP1439 60TcSNP1442
61TcSNP193 62TcSNP25 63TcSNP364 64TcSNP144 65TcSNP230
66TcSNP560 67TcSNP723 68TcSNP731 69TcSNP701 70TcSNP1041
71TcSNP645 72TcSNP917 73Tcm003s01336581 74Tcm003s07402719 75Tcm001s00947643
76Tcm006s26664133 77Tcm002s20575712 78TcSNP529 79TcSNP1458 80TcSNP60
81TcSNP430 82TcSNP823 83TcSNP619 84TcSNP994 85TcSNP1144
86TcSNP1156 87TcSNP469 88TcSNP999 89TcSNP242 90TcSNP1253
91TcSNP1414 92TcSNP154 93TcSNP240