SNP Profiles of PA 156 [PER]   View Data

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 Key

 1234567891011121314
_Input profile
AACCCCCCGGAGCTCCCCCCGGTTCCTT
1._GC-05-137-3-39
AACCCCCCGGAGCTCCCCCCGGTTCCTT
2._GC-05-137-3-39
AACCCCCCGGAGCTCCCCCCGGTTCCTT
3._GC-05-137-3-39
AACCCCCCGGAGCTCCCCCCGGTTCCTT
4._PA_156_[PER]
AACCCCCC________CCCCGG__CC__
5._PA_156_[PER]
AACCCCCC________CCCCGG__CC__
6._PA_156_[PER]
AACCCCCC________CCCCGG__CC__
7._PA_156_[PER]
AACCCCCC________CCCCGG__CC__
8._PA_156_[PER]
AACCCCCC________CCCCGG__CC__
9._RUQ_1531
AACCCCCC________CCCCGG__CC__
10._PA_156_[PER]
AACCCCCC________CCCCGG__CC__
11._PA_156_[PER]
AACCCCCC________CCCCGG__CC__
12._GC-05-137-3-39
AACCCCCCGGAGCTCCCCCCGGTTCCTT
13._RUQ_1531
____CCCC____CT__CC____TTCC__
14._RUQ_1531
______CC____CT______________
15._PA156[PER]
______CC________CC______CC__
16._GC-05-138-3-40
AAAACTAAGGGGCCCCCCCCGGTTCTCT
17._GC-05-138-3-40
AAAACTAAGGGGCCCCCCCCGGTTCTCT
18._GC-05-138-3-40
AAAACTAAGGGGCCCCCCCCGGTTCTCT
19._GC-05-138-3-40
AAAACTAAGGGGCCCCCCCCGGTTCTCT
20._GC-05-138-3-40
AAAACTAAGGGGCCCCCCCCGGTTCTCT
21._PA_156_[PER]
AAAACTAA________CCCCGG__CT__
22._PA_156_[PER]
AAAACTAA________CCCCGG__CT__
23._PA_156_[PER]
AAAACTAA________CCCCGG__CT__
24._PA_156_[PER]
AAAACTAA________CCCCGG__CT__
25._PA_156_[PER]
AAAACTAA________CCCCGG__CT__
26._RUQ_1531
AACC__CCGGAG__GGGG__GGAAGGAA
 1516171819202122232425262728
_Input profile
AACCGGCCCCCGTTAATTGGATAACCGG
1._GC-05-137-3-39
AACCGGCCCCCGTTAATTGGATAACCGG
2._GC-05-137-3-39
AACCGGCCCCCGTTAATTGGATAACCGG
3._GC-05-137-3-39
AACCGG__CCCGTTAATTGGATAACCGG
4._PA_156_[PER]
____GG____CG________ATAA__GG
5._PA_156_[PER]
____GG____CG________ATAA__GG
6._PA_156_[PER]
____GG____CG________ATAA__GG
7._PA_156_[PER]
____GG____CG________ATAA__GG
8._PA_156_[PER]
____GG____CG________ATAA__GG
9._RUQ_1531
____GG____CG________ATAA__GG
10._PA_156_[PER]
____GG____CG________ATAA__GG
11._PA_156_[PER]
____GG____CG________ATAA__GG
12._GC-05-137-3-39
AACCGGCCCCCGTTAATTGGATAACCGG
13._RUQ_1531
________CC________GG__AACCGG
14._RUQ_1531
____GGTT__________________GG
15._PA156[PER]
________GG__TT____GG__AACCCC
16._GC-05-138-3-40
AACCAAGGCCCGCTAATTGGATAACCCG
17._GC-05-138-3-40
AACCAAGGCCCGCTAATTGGATAACCCG
18._GC-05-138-3-40
AACCAAGGCCCGCTAATTGGATAACCCG
19._GC-05-138-3-40
AACCAAGGCCCGCTAATTGGATAACCCG
20._GC-05-138-3-40
AACCAAGGCCCGCTAATTGGATAACCCG
21._PA_156_[PER]
____AA____CG________ATAA__CG
22._PA_156_[PER]
____AA____CG________ATAA__CG
23._PA_156_[PER]
____AA____CG________ATAA__CG
24._PA_156_[PER]
____AA____CG________ATAA__CG
25._PA_156_[PER]
____AA____CG________ATAA__CG
26._RUQ_1531
TTCCGGGG__CGAAAAAAGGATAAGGCC
 2930313233343536373839404142
_Input profile
AATTGTGGCGCCAGGGGGTTAGTTGGCC
1._GC-05-137-3-39
AATTGTGGCGCCAGGGGGTTAGTTGGCC
2._GC-05-137-3-39
AATTGTGGCGCCAGGGGGTTAGTTGGCC
3._GC-05-137-3-39
AATTGTGGCGCCAGGGGGTTAGTTGGCC
4._PA_156_[PER]
AA______CG__AGGG____AG______
5._PA_156_[PER]
AA______CG__AGGG____AG______
6._PA_156_[PER]
AA______CG__AGGG____AG______
7._PA_156_[PER]
AA______CG__AGGG____AG______
8._PA_156_[PER]
AA______CG__AGGG____AG______
9._RUQ_1531
AA______CG__AGGG____AG______
10._PA_156_[PER]
AA______CG__AGGG____AG______
11._PA_156_[PER]
AA______CG__AGGG____AG______
12._GC-05-137-3-39
AATTGTGGCGCCAGGGGGTTAGTTAGCC
13._RUQ_1531
______GGCGCCAGGG____AGTT____
14._RUQ_1531
________CG__AG________TT____
15._PA156[PER]
______GGCG________TT__TT____
16._GC-05-138-3-40
AATTGGAGCGCCAGTTGGTTAGCTAGCC
17._GC-05-138-3-40
AATTGGAGCGCCAGTTGGTTAGCTAGCC
18._GC-05-138-3-40
AATTGGAGCGCCAGTTGGTTAGCTAGCC
19._GC-05-138-3-40
AATTGGAGCGCCAGTTGGTTAGCTAGCC
20._GC-05-138-3-40
AATTGGAGCGCCAGTTGGTTAGCTAGCC
21._PA_156_[PER]
AA______CG__AGTT____AG______
22._PA_156_[PER]
AA______CG__AGTT____AG______
23._PA_156_[PER]
AA______CG__AGTT____AG______
24._PA_156_[PER]
AA______CG__AGTT____AG______
25._PA_156_[PER]
AA______CG__AGTT____AG______
26._RUQ_1531
AAAAACGGCGCCAGCCCCAAAGAAGGGG
 4344454647484950515253545556
_Input profile
GGTTTTAAGGAACCCCGGAGGGTTCCTT
1._GC-05-137-3-39
GGTTTTAAGGAACCCCGGAGGGTTCCTT
2._GC-05-137-3-39
GGTTTTAAGGAACCCCGGAGGGTTCCTT
3._GC-05-137-3-39
GGTTTTAAGGAACCCCGGAGGGTTCCTT
4._PA_156_[PER]
____TT__________________CC__
5._PA_156_[PER]
____TT__________________CC__
6._PA_156_[PER]
____TT__________________CC__
7._PA_156_[PER]
____TT__________________CC__
8._PA_156_[PER]
____TT__________________CC__
9._RUQ_1531
____TT__________________CC__
10._PA_156_[PER]
____TT__________________CC__
11._PA_156_[PER]
____TT__________________CC__
12._GC-05-137-3-39
GGTTTTAAGGAACCCCGGAGGGTTCCTT
13._RUQ_1531
GGTT____GG____________TT__TT
14._RUQ_1531
________GG__________________
15._PA156[PER]
__TT__AA____________________
16._GC-05-138-3-40
GGTTCTAAGGAACCCCGGGGTTTTCTTT
17._GC-05-138-3-40
GGTTCTAAGGAACCCCGGGGTTTTCTTT
18._GC-05-138-3-40
GGTTCTAAGGAACCCCGGGGTTTTCTTT
19._GC-05-138-3-40
GGTTCTAAGGAACCCCGGGGTTTTCTTT
20._GC-05-138-3-40
GGTTCTAAGGAACCCCGGGGTTTTCTTT
21._PA_156_[PER]
____CT__________________CT__
22._PA_156_[PER]
____CT__________________CT__
23._PA_156_[PER]
____CT__________________CT__
24._PA_156_[PER]
____CT__________________CT__
25._PA_156_[PER]
____CT__________________CT__
26._RUQ_1531
CC__AA__GGAAGG__GGAGCCAAGGAA
 5758596061626364656667686970
_Input profile
AGCCCTCTAAGGGGACAATTGGGGCTCC
1._GC-05-137-3-39
AGCCCTCTAAGGGGACAATTGGGGCTCC
2._GC-05-137-3-39
AGCCCTCTAAGGGGACAATTGGGGCTCC
3._GC-05-137-3-39
AGCCCTCTAAGGGGACAATTGGGGCTCC
4._PA_156_[PER]
__CC__CTAAGG__ACAATTGG______
5._PA_156_[PER]
__CC__CTAAGG__ACAATTGG______
6._PA_156_[PER]
__CC__CTAAGG__ACAATTGG______
7._PA_156_[PER]
__CC__CTAAGG__ACAATTGG______
8._PA_156_[PER]
__CC__CTAAGG__ACAATTGG______
9._RUQ_1531
__CC__CTAAGG__ACAATTGG______
10._PA_156_[PER]
__CC__CTAAGG__ACAATTGG______
11._PA_156_[PER]
______CTAAGG__ACAATTGG______
12._GC-05-137-3-39
AGCCCTCTAAGGGGACAATTGGGGCTCC
13._RUQ_1531
GGCCCTCTAA__GGACAATTGGGG____
14._RUQ_1531
AG____________ACAA__GGGG____
15._PA156[PER]
__GGCT__AA__GGACAA________CC
16._GC-05-138-3-40
AACCCTCTAAGGGGAAAAGTGGGGTTCC
17._GC-05-138-3-40
AACCCTCTAAGGGGAAAAGTGGGGTTCC
18._GC-05-138-3-40
AACCCTCTAAGGGGAAAAGTGGGGTTCC
19._GC-05-138-3-40
AACCCTCTAAGGGGAAAAGTGGGGTTCC
20._GC-05-138-3-40
AACCCTCTAAGGGGAAAAGTGGGGTTCC
21._PA_156_[PER]
__CC__CTAAGG__AAAAGTGG______
22._PA_156_[PER]
__CC__CTAAGG__AAAAGTGG______
23._PA_156_[PER]
__CC__CTAAGG__AAAAGTGG______
24._PA_156_[PER]
__CC__CTAAGG__AAAAGTGG______
25._PA_156_[PER]
__CC__CTAAGG__AAAAGTGG______
26._RUQ_1531
AGGGAGAGAAGGGGACAAAACCGG____
 7172737475767778798081828384
_Input profile
AATTCCAGAAAAAGACGGCCATACTTCC
1._GC-05-137-3-39
AATTCCAGAAAAAGACGGCCATACTTCC
2._GC-05-137-3-39
AATTCCAGAAAAAGACGGCCATACTTCC
3._GC-05-137-3-39
AATTCCAGAAAAAGACGGCCATACTTCC
4._PA_156_[PER]
AATT__________ACGG______TTCC
5._PA_156_[PER]
AATT__________ACGG______TTCC
6._PA_156_[PER]
AATT__________ACGG______TTCC
7._PA_156_[PER]
AATT__________ACGG______TTCC
8._PA_156_[PER]
AATT__________ACGG______TTCC
9._RUQ_1531
AATT__________ACGG______TTCC
10._PA_156_[PER]
AATT__________ACGG______TTCC
11._PA_156_[PER]
AATT__________ACGG______TTCC
12._GC-05-137-3-39
AATTCCAGAAAAAGACGGCCATACTTCC
13._RUQ_1531
______________ACGG____ACTT__
14._RUQ_1531
AA____________ACGG____AC____
15._PA156[PER]
________________CC________CC
16._GC-05-138-3-40
AGCTAAAAACAAAACCGGCCATAACTTT
17._GC-05-138-3-40
AGCTAAAAACAAAACCGGCCATAACTTT
18._GC-05-138-3-40
AGCTAAAAACAAAACCGGCCATAACTTT
19._GC-05-138-3-40
AGCTAAAAACAAAACCGGCCATAACTTT
20._GC-05-138-3-40
AGCTAAAAACAAAACCGGCCATAACTTT
21._PA_156_[PER]
AGCT__________CCGG______CTTT
22._PA_156_[PER]
AGCT__________CCGG______CTTT
23._PA_156_[PER]
AGCT__________CCGG______CTTT
24._PA_156_[PER]
AGCT__________CCGG______CTTT
25._PA_156_[PER]
AGCT__________CCGG______CTTT
26._RUQ_1531
__AACCAGAAAA__ACCCGGATACAAGG
 858687888990919293     
_Input profile
CCCTAACTCCTTTTAAGGX_XX_XX_XX_XX_X
1._GC-05-137-3-39
CCCTAACTCCTTTTAAGGX_XX_XX_XX_XX_X
2._GC-05-137-3-39
CCCTAACTCCTTTTAAGGX_XX_XX_XX_XX_X
3._GC-05-137-3-39
CCCTAACTCCTTTTAAGGX_XX_XX_XX_XX_X
4._PA_156_[PER]
CC__AA__CCTTTT____X_XX_XX_XX_XX_X
5._PA_156_[PER]
CC__AA__CCTTTT____X_XX_XX_XX_XX_X
6._PA_156_[PER]
CC__AA__CCTTTT____X_XX_XX_XX_XX_X
7._PA_156_[PER]
CC__AA__CCTTTT____X_XX_XX_XX_XX_X
8._PA_156_[PER]
CC__AA__CCTTTT____X_XX_XX_XX_XX_X
9._RUQ_1531
CC__AA__CCTTTT____X_XX_XX_XX_XX_X
10._PA_156_[PER]
CC__AA__CCTTTT____X_XX_XX_XX_XX_X
11._PA_156_[PER]
____AA__CCTTTT____X_XX_XX_XX_XX_X
12._GC-05-137-3-39
CCCTAACTCCTTTTAAGGX_XX_XX_XX_XX_X
13._RUQ_1531
____AA__CCTT______X_XX_XX_XX_XX_X
14._RUQ_1531
CC____CT__TT______X_XX_XX_XX_XX_X
15._PA156[PER]
__________________X_XX_XX_XX_XX_X
16._GC-05-138-3-40
TTCCAATTCTTTTTATGGX_XX_XX_XX_XX_X
17._GC-05-138-3-40
TTCCAATTCTTTTTATGGX_XX_XX_XX_XX_X
18._GC-05-138-3-40
TTCCAATTCTTTTTATGGX_XX_XX_XX_XX_X
19._GC-05-138-3-40
TTCCAATTCTTTTTATGGX_XX_XX_XX_XX_X
20._GC-05-138-3-40
TTCCAATTCTTTTTATGGX_XX_XX_XX_XX_X
21._PA_156_[PER]
TT__AA__CTTTTT____X_XX_XX_XX_XX_X
22._PA_156_[PER]
TT__AA__CTTTTT____X_XX_XX_XX_XX_X
23._PA_156_[PER]
TT__AA__CTTTTT____X_XX_XX_XX_XX_X
24._PA_156_[PER]
TT__AA__CTTTTT____X_XX_XX_XX_XX_X
25._PA_156_[PER]
TT__AA__CTTTTT____X_XX_XX_XX_XX_X
26._RUQ_1531
__AG____GGAAAATTGGX_XX_XX_XX_XX_X

Input profile: PA_156_[PER] GC-05-137-3-39

 
Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1
 Mars, 2018

1._PA_156_[PER] GC-05-137-3-39

identical
93 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: 4 > FP3
 Mars, 2018

2._PA_156_[PER] GC-05-137-3-39

identical
93 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2
 Mars, 2018

3._PA_156_[PER] GC-05-137-3-39

identical
92 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 5
Notes: 5 > FP4
 Mars, 2018

4._PA_156_[PER]

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 5339 1
 Dapeng Zhang, 2016
Population Assignment: 
 Dapeng Zhang, 2016

5._PA_156_[PER]

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 5339 2
 Dapeng Zhang, 2016

6._PA_156_[PER]

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 5339 3 > FP
 Dapeng Zhang, 2016

7._PA_156_[PER]

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 5339 4 > FP
 Dapeng Zhang, 2016

8._PA_156_[PER]

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 5339 5 > FP
 Dapeng Zhang, 2016

9._PA_156_[PER] RUQ_1531

identical
39 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2016

10._PA_156_[PER]

identical
39 shared markers

Malaysian Cocoa Board (MCB), Malaysia
Location: Plot 1 - Row1 C0184 28
 Dapeng Zhang, 2016

11._PA_156_[PER]

identical
37 shared markers

International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: 5A D295 T1
 Dapeng Zhang, 2016

12._PA_156_[PER] GC-05-137-3-39

99.5 %
93 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3 > FP2
 Mars, 2018

13._PA_156_[PER] RUQ_1531

98.8 %
41 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

14._PA_156_[PER] RUQ_1531

95.2 %
21 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Lambert Motilal, 2023

15._PA_156_[PER] PA156[PER]

83.3 %
24 shared markers

Center for Forestry Research and Technology Transfer, Vietnam
Location: CEFORTT
 Jocelyn De Wever et al., 2019

16._PA_156_[PER] GC-05-138-3-40

74.2 %
93 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2 > FP2
 Mars, 2018

17._PA_156_[PER] GC-05-138-3-40

74.2 %
93 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1 > FP1
 Mars, 2018

18._PA_156_[PER] GC-05-138-3-40

74.2 %
93 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3 > FP3
 Mars, 2018

19._PA_156_[PER] GC-05-138-3-40

74.2 %
93 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: 4
 Mars, 2018

20._PA_156_[PER] GC-05-138-3-40

74.2 %
93 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 5
Notes: 5
 Mars, 2018

21._PA_156_[PER]

69.2 %
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 5340 4
 Dapeng Zhang, 2016

22._PA_156_[PER]

69.2 %
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 5340 5
 Dapeng Zhang, 2016

23._PA_156_[PER]

69.2 %
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 5340 1 > FP
 Dapeng Zhang, 2016

24._PA_156_[PER]

69.2 %
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 5340 2 > FP
 Dapeng Zhang, 2016

25._PA_156_[PER]

69.2 %
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 5340 3 > FP
 Dapeng Zhang, 2016

26._PA_156_[PER] RUQ_1531

49.4 %
79 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
Notes: Reading_Collection
 Mars, 2018

 


  Key to SNP Markers

1TcSNP1075 2TcSNP1350 3TcSNP534 4TcSNP591 5TcSNP42
6TcSNP418 7TcSNP702 8TcSNP1096 9TcSNP1060 10TcSNP1165
11TcSNP429 12TcSNP75 13TcSNP891 14TcSNP122 15TcSNP316
16TcSNP521 17TcSNP1062 18TcSNP836 19TcSNP878 20TcSNP929
21TcSNP413 22TcSNP653 23TcSNP1149 24TcSNP174 25TcSNP32
26TcSNP372 27TcSNP448 28TcSNP872 29TcSNP953 30TcSNP1034
31TcSNP1175 32TcSNP1111 33TcSNP577 34TcSNP90 35TcSNP998
36TcSNP150 37TcSNP28 38TcSNP751 39TcSNP1484 40TcSNP602
41TcSNP561 42TcSNP894 43TcSNP1063 44TcSNP1126 45TcSNP1270
46TcSNP606 47TcSNP329 48TcSNP689 49TcSNP944 50TcSNP1242
51TcSNP1383 52TcSNP547 53TcSNP776 54TcSNP1309 55TcSNP1520
56TcSNP799 57TcSNP899 58TcSNP226 59TcSNP1439 60TcSNP1442
61TcSNP193 62TcSNP25 63TcSNP364 64TcSNP144 65TcSNP230
66TcSNP560 67TcSNP723 68TcSNP731 69TcSNP701 70TcSNP1041
71TcSNP645 72TcSNP917 73Tcm003s01336581 74Tcm003s07402719 75Tcm001s00947643
76Tcm006s26664133 77Tcm002s20575712 78TcSNP529 79TcSNP1458 80TcSNP60
81TcSNP430 82TcSNP823 83TcSNP619 84TcSNP994 85TcSNP1144
86TcSNP1156 87TcSNP469 88TcSNP999 89TcSNP242 90TcSNP1253
91TcSNP1414 92TcSNP154 93TcSNP240