SNP Profiles of MO-9   View Data

 Show/Hide Profiles

 Key

 1 2 3 4 5 6 7 8 9 10 11 12 13 14
_Input profile
AAACCTCCGGGGCCCCCCCCGGTTCCTT
1._GC-05-119-3-21
AAACCTCCGGGGCCCCCCCCGGTTCCTT
2._GC-05-119-3-21
AAACCTCCGGGGCCCCCCCCGGTTCCTT
3._GC-05-071-2-22
AAACCTCCGGGGCCCCCCCCGGTTCCTT
4._GC-05-071-2-22
AAACCTCCGGGGCCCCCCCCGGTTCCTT
5._MO_9
AAACCTCC________CCCCGG__CC__
6._MO_9
AAACCTCC________CCCCGG__CC__
7._MO_9
AAACCTCC________CCCCGG__CC__
8._MO_9
AAACCTCC________CCCCGG__CC__
9._MO_9
AAACCTCC________CCCCGG__CC__
10._MO_9
AAACCTCC________CCCCGG__CC__
11._RUQ_1691
______CC____CT______________
12._GC-05-119-3-21
AAACCTACGGAGCTCTCTCTAGCTCTCT
13._GC-05-071-2-22
AAACCTACGGAGCTCTCTCTAGCTCTCT
14._GC-05-071-2-22
AAACCTACGGAGCTCTCTCTAGCTCTCT
15._GC-05-071-2-22
AAACCTACGGAGCTCTCTCTAGCTCTCT
16._GC-05-071-2-22
__ACCTACGGAGCTCTCTCTAGCTCTCT
17._MO_9
AAACCTAC________CTCTAG__CT__
18._MO_9
AAACCTAC________CTCTAG__CT__
19._MO_9
AAACCTAC________CTCTAG__CT__
20._MO_9
AAACCTAC________CTCTAG__CT__
21._MO_9
__ACCTAC________CTCTAG__CT__
22._RUQ_1691
AAAC__CCGGGG__GGGG__GGAAGGAA
 15 16 17 18 19 20 21 22 23 24 25 26 27 28
_Input profile
AACCAAGGGGCCCGTTAATTGGAAAACC
1._GC-05-119-3-21
AACCAAGGGGCCCGTTAATTGGAAAACC
2._GC-05-119-3-21
AACCAAGGGGCCCGTTAATTGGAAAACC
3._GC-05-071-2-22
AACCAAGGGGCCCGTTAATTGGAAAACC
4._GC-05-071-2-22
AACCAAGGGGCCCGTTAATTGGAAAACC
5._MO_9
______GG____CG________AAAA__
6._MO_9
______GG____CG________AAAA__
7._MO_9
______GG____CG________AAAA__
8._MO_9
______GG____CG________AAAA__
9._MO_9
______GG____CG________AAAA__
10._MO_9
______GG____CG________AAAA__
11._RUQ_1691
______GGTT__________________
12._GC-05-119-3-21
ATACAAAGCGCCCGCTAATTGGATATGG
13._GC-05-071-2-22
ATACAAAGCGCCCGCTAATTGGATATGG
14._GC-05-071-2-22
ATACAAAGCGCCCGCTAATTGGATATGG
15._GC-05-071-2-22
ATACAAAGCGCCCGCTAATTGGATATGG
16._GC-05-071-2-22
ATACAAAGCGCCCGCTAATTGGATATGG
17._MO_9
______AG____CG________ATAT__
18._MO_9
______AG____CG________ATAT__
19._MO_9
______AG____CG________ATAT__
20._MO_9
______AG____CG________ATAT__
21._MO_9
______AG____CG________ATAT__
22._RUQ_1691
TTCCAGGGCC__CGAAAAAAGGAAAAGG
 29 30 31 32 33 34 35 36 37 38 39 40 41 42
_Input profile
GGAATTTTAGGGCCAGGTGGGTGGTTGG
1._GC-05-119-3-21
GGAATTTTAGGGCCAGGTGGGTGGTTGG
2._GC-05-119-3-21
GGAATTTTAGGGCCAGGTGGGTGGTTGG
3._GC-05-071-2-22
GGAATTTTAGGGCCAGGTGGGTGGTTGG
4._GC-05-071-2-22
GGAATTTTAGGGCCAGGTGGGTGGTTGG
5._MO_9
GGAA______GG__AGGT____GG____
6._MO_9
GGAA______GG__AGGT____GG____
7._MO_9
GGAA______GG__AGGT____GG____
8._MO_9
GGAA______GG__AGGT____GG____
9._MO_9
GGAA______GG__AGGT____GG____
10._MO_9
GGAA______GG__AGGT____GG____
11._RUQ_1691
GG________GG__AG________TT__
12._GC-05-119-3-21
CCATTTGTAGCGACAGGGGTGTAACCAG
13._GC-05-071-2-22
CCATTTGTAGCGACAGGGGTGTAACCAG
14._GC-05-071-2-22
CCATTTGTAGCGACAGGGGTGTAACCAG
15._GC-05-071-2-22
CCATTTGTAGCGACAGGGGTGTAACCAG
16._GC-05-071-2-22
CCATTTGTAGCGACAGGGGTGTAACCAG
17._MO_9
CCAT______CG__AGGG____AA____
18._MO_9
CCAT______CG__AGGG____AA____
19._MO_9
CCAT______CG__AGGG____AA____
20._MO_9
CCAT______CG__AGGG____AA____
21._MO_9
CCAT______CG__AGGG____AA____
22._RUQ_1691
CCAAAAAAAGGGCCAGACCCACGGAAGG
 43 44 45 46 47 48 49 50 51 52 53 54 55 56
_Input profile
CCGGTTCCAAGGAACCCCGGAGGGCCCC
1._GC-05-119-3-21
CCGGTTCCAAGGAACCCCGGAGGGCCCC
2._GC-05-119-3-21
CCGGTTCCAAGGAACCCCGGAGGGCCCC
3._GC-05-071-2-22
CCGGTTCCAAGGAACCCCGGAGGGCCCC
4._GC-05-071-2-22
CCGGTTCCAAGGAACCCCGGAGGGCCCC
5._MO_9
______CC________________CCCC
6._MO_9
______CC________________CCCC
7._MO_9
______CC________________CCCC
8._MO_9
______CC________________CCCC
9._MO_9
______CC________________CCCC
10._MO_9
______CC________________CCCC
11._RUQ_1691
__________GG________________
12._GC-05-119-3-21
CCGGATCCAGAAAACTACAGAGGGCTCT
13._GC-05-071-2-22
CCGGATCCAGAAAACTACAGAGGGCTCT
14._GC-05-071-2-22
CCGGATCCAGAAAACTACAGAGGGCTCT
15._GC-05-071-2-22
CCGGATCCAGAAAACTACAGAGGGCTCT
16._GC-05-071-2-22
CCGGATCCAGAAAACTACAGAGGGCTCT
17._MO_9
______CC________________CTCT
18._MO_9
______CC________________CTCT
19._MO_9
______CC________________CTCT
20._MO_9
______CC________________CTCT
21._MO_9
______CC________________CTCT
22._RUQ_1691
GGCC__GG__GGAAGG__GGAGCCGGGG
 57 58 59 60 61 62 63 64 65 66 67 68 69 70
_Input profile
TTGGCCCTCTGGGGACAAGTGGAGCTCC
1._GC-05-119-3-21
TTGGCCCTCTGGGGACAAGTGGAGCTCC
2._GC-05-119-3-21
TTGGCCCTCTGGGGACAAGTGGAGCTCC
3._GC-05-071-2-22
TTGGCCCTCTGGGGACAAGTGGAGCTCC
4._GC-05-071-2-22
TT__CCCTCTGGGGACAAGTGGAGCTCC
5._MO_9
____CC__CTGG__ACAAGTGG______
6._MO_9
____CC__CTGG__ACAAGTGG______
7._MO_9
____CC__CTGG__ACAAGTGG______
8._MO_9
____CC__CTGG__ACAAGTGG______
9._MO_9
____CC__CTGG__ACAAGTGG______
10._MO_9
________CTGG__ACAAGTGG______
11._RUQ_1691
__GG__________ACAA__GGAG____
12._GC-05-119-3-21
TTAGCGCTTTCGAGAAAGGTGTAGCTCC
13._GC-05-071-2-22
TTAGCGCTTTCGAGAAAGGTGTAGCTCC
14._GC-05-071-2-22
TTAGCGCTTTCGAGAAAGGTGTAGCTCC
15._GC-05-071-2-22
TTAGCGCTTTCGAGAAAGGTGTAGCTCC
16._GC-05-071-2-22
TTAGCGCTTTCGAGAAAGGTGTAGCTCC
17._MO_9
____CG__TTCG__AAAGGTGT______
18._MO_9
____CG__TTCG__AAAGGTGT______
19._MO_9
____CG__TTCG__AAAGGTGT______
20._MO_9
____CG__TTCG__AAAGGTGT______
21._MO_9
____CG__TTCG__AAAGGTGT______
22._RUQ_1691
AAGGGGAGAGGGGGACAAACCCAG____
 71 72 73 74 75 76 77 78 79 80 81 82 83 84
_Input profile
AACTCCAGCCACGGCCCGCCTTAATTCT
1._GC-05-119-3-21
AACTCCAGCCACGGCCCGCCTTAATTCT
2._GC-05-119-3-21
AACTCCAGCCACGGCCCGCCTTAATTCT
3._GC-05-071-2-22
AACTCCAGCCACGGCCCGCCTTAATTCT
4._GC-05-071-2-22
AACTCCAGCCACGGCCCGCCTTAATTCT
5._MO_9
AACT__________CCCG______TTCT
6._MO_9
AACT__________CCCG______TTCT
7._MO_9
AACT__________CCCG______TTCT
8._MO_9
AACT__________CCCG______TTCT
9._MO_9
AACT__________CCCG______TTCT
10._MO_9
AACT__________CCCG______TTCT
11._RUQ_1691
AA____________CCCG____AA____
12._GC-05-119-3-21
AACTACGGCCACAAACCGCTAAACTTCT
13._GC-05-071-2-22
AACTACGGCCACAAACCGCTAAACTTCT
14._GC-05-071-2-22
AACTACGGCCACAAACCGCTAAACTTCT
15._GC-05-071-2-22
AACTACGGCCACAAACCGCTAAACTTCT
16._GC-05-071-2-22
AACTACGGCCACAAACCGCTAAACTTCT
17._MO_9
AACT__________ACCG______TTCT
18._MO_9
AACT__________ACCG______TTCT
19._MO_9
AACT__________ACCG______TTCT
20._MO_9
AACT__________ACCG______TTCT
21._MO_9
AACT__________ACCG______TTCT
22._RUQ_1691
__AGCCAGCCAC__CCCGGGTTAAAAAG
 85 86 87 88 89 90 91 92 93      
_Input profile
CCCCAACTCCTTTTAAGGX_XX_XX_XX_XX_X
1._GC-05-119-3-21
CCCCAACTCCTTTTAAGGX_XX_XX_XX_XX_X
2._GC-05-119-3-21
CCCCAACTCCTTTTAAGGX_XX_XX_XX_XX_X
3._GC-05-071-2-22
CCCCAACTCCTTTTAAGGX_XX_XX_XX_XX_X
4._GC-05-071-2-22
CCCCAACTCCTTTTAAGGX_XX_XX_XX_XX_X
5._MO_9
CC__AA__CCTTTT____X_XX_XX_XX_XX_X
6._MO_9
CC__AA__CCTTTT____X_XX_XX_XX_XX_X
7._MO_9
CC__AA__CCTTTT____X_XX_XX_XX_XX_X
8._MO_9
CC__AA__CCTTTT____X_XX_XX_XX_XX_X
9._MO_9
CC__AA__CCTTTT____X_XX_XX_XX_XX_X
10._MO_9
CC__AA__CCTTTT____X_XX_XX_XX_XX_X
11._RUQ_1691
CC____CT__TT______X_XX_XX_XX_XX_X
12._GC-05-119-3-21
CTCTAGCCCTGTCTATGGX_XX_XX_XX_XX_X
13._GC-05-071-2-22
CTCTAGCCCTGTCTATGGX_XX_XX_XX_XX_X
14._GC-05-071-2-22
CTCTAGCCCTGTCTATGGX_XX_XX_XX_XX_X
15._GC-05-071-2-22
CTCTAGCCCTGTCTATGGX_XX_XX_XX_XX_X
16._GC-05-071-2-22
CTCTAGCCCTGTCTATGGX_XX_XX_XX_XX_X
17._MO_9
CT__AG__CTGTCT____X_XX_XX_XX_XX_X
18._MO_9
CT__AG__CTGTCT____X_XX_XX_XX_XX_X
19._MO_9
CT__AG__CTGTCT____X_XX_XX_XX_XX_X
20._MO_9
CT__AG__CTGTCT____X_XX_XX_XX_XX_X
21._MO_9
CT__AG__CTGTCT____X_XX_XX_XX_XX_X
22._RUQ_1691
__GG____GGAAAATTGGX_XX_XX_XX_XX_X

Input profile: MO_9 GC-05-119-3-21

 
Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3 > FP4
 Mars, 2018

1._MO_9 GC-05-119-3-21

identical
93 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: 4 > FP3
 Mars, 2018

2._MO_9 GC-05-119-3-21

identical
93 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2
 Mars, 2018

3._MO_9 GC-05-071-2-22

identical
93 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 5
Notes: 5
 Mars, 2018

4._MO_9 GC-05-071-2-22

identical
92 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1 > FP1
 Mars, 2018

5._MO_9

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 5222 5
 Dapeng Zhang, 2016

6._MO_9

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 5222 1 > FP
 Dapeng Zhang, 2016

7._MO_9

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 5321 2
 Dapeng Zhang, 2016

8._MO_9

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 5321 3 > FP
 Dapeng Zhang, 2016

9._MO_9

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 5321 4 > FP
 Dapeng Zhang, 2016

10._MO_9

identical
38 shared markers

International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: Marper D835
 Dapeng Zhang, 2016

11._MO_9 RUQ_1691

92.9 %
21 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Lambert Motilal, 2023
Population Assignment: 

12._MO_9 GC-05-119-3-21

64.5 %
93 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 5
Notes: 5
 Mars, 2018

13._MO_9 GC-05-071-2-22

64.5 %
93 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: 4 > FP4
 Mars, 2018

14._MO_9 GC-05-071-2-22

64.5 %
93 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3 > FP3
 Mars, 2018

15._MO_9 GC-05-071-2-22

64.5 %
93 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2 > FP2
 Mars, 2018

16._MO_9 GC-05-071-2-22

64.1 %
92 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2 > FP2
 Mars, 2018

17._MO_9

62.8 %
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 5222 2 > FP
 Dapeng Zhang, 2016

18._MO_9

62.8 %
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 5222 3 > FP
 Dapeng Zhang, 2016

19._MO_9

62.8 %
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 5222 4 > FP
 Dapeng Zhang, 2016

20._MO_9

62.8 %
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 5321 5
 Dapeng Zhang, 2016

21._MO_9

61.8 %
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: 5222 2 > FP
 Dapeng Zhang, 2016

22._MO_9 RUQ_1691

50 %
79 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
Notes: Reading_Collection
 Mars, 2018

 


  Key to SNP Markers

1TcSNP1075 2TcSNP1350 3TcSNP534 4TcSNP591 5TcSNP42
6TcSNP418 7TcSNP702 8TcSNP1096 9TcSNP1060 10TcSNP1165
11TcSNP429 12TcSNP75 13TcSNP891 14TcSNP122 15TcSNP316
16TcSNP521 17TcSNP860 18TcSNP1062 19TcSNP836 20TcSNP878
21TcSNP929 22TcSNP413 23TcSNP653 24TcSNP1149 25TcSNP174
26TcSNP32 27TcSNP372 28TcSNP448 29TcSNP872 30TcSNP953
31TcSNP1034 32TcSNP1175 33TcSNP1111 34TcSNP577 35TcSNP90
36TcSNP998 37TcSNP150 38TcSNP28 39TcSNP751 40TcSNP1484
41TcSNP602 42TcSNP561 43TcSNP894 44TcSNP1063 45TcSNP1126
46TcSNP1270 47TcSNP606 48TcSNP329 49TcSNP689 50TcSNP944
51TcSNP1242 52TcSNP1383 53TcSNP547 54TcSNP776 55TcSNP151
56TcSNP1520 57TcSNP799 58TcSNP899 59TcSNP226 60TcSNP1439
61TcSNP1442 62TcSNP25 63TcSNP364 64TcSNP144 65TcSNP230
66TcSNP560 67TcSNP723 68TcSNP731 69TcSNP701 70TcSNP1041
71TcSNP645 72TcSNP917 73Tcm003s01336581 74Tcm003s07402719 75Tcm001s00947643
76Tcm006s26664133 77Tcm002s20575712 78TcSNP529 79TcSNP1458 80TcSNP60
81TcSNP430 82TcSNP823 83TcSNP619 84TcSNP994 85TcSNP1144
86TcSNP1156 87TcSNP469 88TcSNP999 89TcSNP242 90TcSNP1253
91TcSNP1414 92TcSNP154 93TcSNP240