SNP Profiles of B-12.1   View Data

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 Key

 1234567891011121314
_Input profile
TTCTCCAAAATTTTCCTTAGTTTTTTTT
1._GC-05-093-2-44
TTCTCCAAAATTTTCCTTAGTTTTTTTT
2._GC-05-093-2-44
TTCTCCAAAATTTTCCTTAGTTTTTTTT
3._GC-05-093-2-44
TTCTCCAAAATTTTCCTTAGTTTTTTTT
4._GC-05-093-2-44
TTCTCCAAAATTTTCCTTAGTTTTTTTT
5._B_12_/1_[POU]
TTCTCC________CCTTAG__TT____
6._B_12_/1_[POU]
TTCTCC________CCTTAG__TT____
7._B_12_/1_[POU]
TTCTCC________CCTTAG__TT____
8._B_12_/1_[POU]
TTCTCC________CCTTAG__TT____
9._B_12_/1_[POU]
TTCTCC________CCTTAG__TT____
10._B_12_/1_[POU]
TTCTCC________CCTTAG__TT____
11._RUQ_1541
TTCTCC________CCTTAG__CT____
12._RUQ_1541
__CTCC____TT__CC____TTTT____
13._RUQ_1541
____CC____TT________________
14._RUQ_1541
TT__CCAAAA__AAGG__AGAAAAAAAA
 1516171819202122232425262728
_Input profile
AAAAAGCGGGGGCCAACCGGAATTCCGG
1._GC-05-093-2-44
AAAAAGCGGGGGCCAACCGGAATTCCGG
2._GC-05-093-2-44
AAAAAGCGGGGGCCAACCGGAATTCCGG
3._GC-05-093-2-44
AAAAAGCGGGGGCCAACCGGAATTCCGG
4._GC-05-093-2-44
AAAAAGCGGGGGCCAACCGGAATTCCGG
5._B_12_/1_[POU]
____AG____GG________AATT__GG
6._B_12_/1_[POU]
____AG____GG________AATT__GG
7._B_12_/1_[POU]
____AG____GG________AATT__GG
8._B_12_/1_[POU]
____AG____GG________AATT__GG
9._B_12_/1_[POU]
____AG____GG________AATT__GG
10._B_12_/1_[POU]
____AG____GG________AATT__GG
11._RUQ_1541
____AG____GG________AATT__GG
12._RUQ_1541
________GG________GG__TTCCGG
13._RUQ_1541
____AGCT__________________GG
14._RUQ_1541
AAAAAGCG__GGGGAAGGGGAATTGGCC
 2930313233343536373839404142
_Input profile
AATTTTAGGGCCAGGTGGTTGGCTGGGG
1._GC-05-093-2-44
AATTTTAGGGCCAGGTGGTTGGCTGGGG
2._GC-05-093-2-44
AATTTTAGGGCCAGGTGGTTGGCTGGGG
3._GC-05-093-2-44
AATTTTAGGGCCAGGTGGTTGGCTGGGG
4._GC-05-093-2-44
AATTTTAGGGCCAGGTGGTTGGCTGGGG
5._B_12_/1_[POU]
AA______GG__AGGT____GG______
6._B_12_/1_[POU]
AA______GG__AGGT____GG______
7._B_12_/1_[POU]
AA______GG__AGGT____GG______
8._B_12_/1_[POU]
AA______GG__AGGT____GG______
9._B_12_/1_[POU]
AA______GG__AGGT____GG______
10._B_12_/1_[POU]
AA______GG__AGGT____GG______
11._RUQ_1541
AA______GG__AGGT____GG______
12._RUQ_1541
______AGGGCCAGGT____GGCT____
13._RUQ_1541
________GG__AG________CT____
14._RUQ_1541
AAAAAAAGGGCCAGACCCAAGGAGGGCC
 4344454647484950515253545556
_Input profile
TTATCCAAGGGGCTACGGAGTTCTCCTT
1._GC-05-093-2-44
TTATCCAAGGGGCTACGGAGTTCTCCTT
2._GC-05-093-2-44
TTATCCAAGGGGCTACGGAGTTCTCCTT
3._GC-05-093-2-44
__ATCCAAGGGGCTACGGAGTTCTCCTT
4._GC-05-093-2-44
TTATCCAAGGGGCTACGGAGTT__CCTT
5._B_12_/1_[POU]
____CC________________CTCC__
6._B_12_/1_[POU]
____CC________________CTCC__
7._B_12_/1_[POU]
____CC________________CTCC__
8._B_12_/1_[POU]
____CC________________CTCC__
9._B_12_/1_[POU]
____CC________________CTCC__
10._B_12_/1_[POU]
____CC__________________CC__
11._RUQ_1541
____CC________________CTCC__
12._RUQ_1541
TTAT____GG__________CTCT__TT
13._RUQ_1541
________GG__________________
14._RUQ_1541
AA__GG__GGAAAG__GGAGAGAGGGAA
 5758596061626364656667686970
_Input profile
AGCCTTCTAAGGGGCCAAGTGTAGTTCC
1._GC-05-093-2-44
AGCCTTCTAAGGGGCCAAGTGTAGTTCC
2._GC-05-093-2-44
AGCCTTCTAAGGGGCCAAGTGTAGTTCC
3._GC-05-093-2-44
AGCCTTCTAAGGGGCCAAGTGTAGTTCC
4._GC-05-093-2-44
AGCCTTCTAAGGGGCCAAGTGTAGTTCC
5._B_12_/1_[POU]
__CC__CTAAGG__CCAAGTGT______
6._B_12_/1_[POU]
__CC__CTAAGG__CCAAGTGT______
7._B_12_/1_[POU]
__CC__CTAAGG__CCAAGTGT______
8._B_12_/1_[POU]
__CC__CTAAGG__CCAAGTGT______
9._B_12_/1_[POU]
__CC__CTAAGG__CCAAGTGT______
10._B_12_/1_[POU]
__CC__CTAAGG__CCAAGTGT______
11._RUQ_1541
__CC__CTAAGG__CCAAGTGT______
12._RUQ_1541
__CCTTCTAA__GGCCAAGTGTAG____
13._RUQ_1541
AG____________CCAA__GTAG____
14._RUQ_1541
AGGGAAAGAAGGGGCCAAACACAG____
 7172737475767778798081828384
_Input profile
AACTCCAGCCCCAACCCGCCAACCCCCT
1._GC-05-093-2-44
AACTCCAGCCCCAACCCGCCAACCCCCT
2._GC-05-093-2-44
AACTCCAGCCCCAACCCGCCAACCCCCT
3._GC-05-093-2-44
AACTCCAGCCCCAACCCGCCAACCCCCT
4._GC-05-093-2-44
AACTCCAGCCCCAACCCGCCAACCCCCT
5._B_12_/1_[POU]
AACT__________CCCG______CCCT
6._B_12_/1_[POU]
AACT__________CCCG______CCCT
7._B_12_/1_[POU]
AACT__________CCCG______CCCT
8._B_12_/1_[POU]
AACT__________CCCG______CCCT
9._B_12_/1_[POU]
AACT__________CCCG______CCCT
10._B_12_/1_[POU]
AACT__________CCCG______CCCT
11._RUQ_1541
AACT__________CCCG______CCCT
12._RUQ_1541
______________CCCG____CCCC__
13._RUQ_1541
AA____________CCCG____CC____
14._RUQ_1541
__AGCCAGCCCC__CCCGGGAACCGGAG
 858687888990919293     
_Input profile
CCTTAACTCCGTTTATGGX_XX_XX_XX_XX_X
1._GC-05-093-2-44
CCTTAACTCCGTTTATGGX_XX_XX_XX_XX_X
2._GC-05-093-2-44
CCTTAACTCCGTTTATGGX_XX_XX_XX_XX_X
3._GC-05-093-2-44
CCTTAACTCCGTTTATGGX_XX_XX_XX_XX_X
4._GC-05-093-2-44
CCTTAACTCCGTTTATGGX_XX_XX_XX_XX_X
5._B_12_/1_[POU]
CC__AA__CCGTTT____X_XX_XX_XX_XX_X
6._B_12_/1_[POU]
CC__AA__CCGTTT____X_XX_XX_XX_XX_X
7._B_12_/1_[POU]
CC__AA__CCGTTT____X_XX_XX_XX_XX_X
8._B_12_/1_[POU]
CC__AA__CCGTTT____X_XX_XX_XX_XX_X
9._B_12_/1_[POU]
CC__AA__CCGTTT____X_XX_XX_XX_XX_X
10._B_12_/1_[POU]
CC__AA__CCGTTT____X_XX_XX_XX_XX_X
11._RUQ_1541
CC__AA__CCGTTT____X_XX_XX_XX_XX_X
12._RUQ_1541
____AACCCCGT______X_XX_XX_XX_XX_X
13._RUQ_1541
CC____CT__GT______X_XX_XX_XX_XX_X
14._RUQ_1541
__AA____GGACAAATGGX_XX_XX_XX_XX_X

Input profile: B_12_/1_[POU] GC-05-093-2-44

 
Mars Center for Cocoa Science, Brazil
Location: Tree: 5
Notes: 5
 Mars, 2018

1._B_12_/1_[POU] GC-05-093-2-44

identical
93 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1 > FP1
 Mars, 2018

2._B_12_/1_[POU] GC-05-093-2-44

identical
93 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: 4
 Mars, 2018

3._B_12_/1_[POU] GC-05-093-2-44

identical
92 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2
 Mars, 2018

4._B_12_/1_[POU] GC-05-093-2-44

identical
92 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3
 Mars, 2018

5._B_12_/1_[POU]

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 5244 1 > FP
 Dapeng Zhang, 2016

6._B_12_/1_[POU]

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 5244 5
 Dapeng Zhang, 2016

7._B_12_/1_[POU]

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 5244 4
 Dapeng Zhang, 2016

8._B_12_/1_[POU]

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 5244 2
 Dapeng Zhang, 2016
Population Assignment: 
 Dapeng Zhang, 2016

9._B_12_/1_[POU]

identical
39 shared markers

International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: 6B F461 T10
 Dapeng Zhang, 2016

10._B_12_/1_[POU]

identical
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: 5244 3
 Dapeng Zhang, 2016

11._B_12_/1_[POU] RUQ_1541

98.7 %
39 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2016

12._B_12_/1_[POU] RUQ_1541

97.6 %
42 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

13._B_12_/1_[POU] RUQ_1541

95.2 %
21 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Lambert Motilal, 2023

14._B_12_/1_[POU] RUQ_1541

51.9 %
79 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
Notes: Reading_Collection
 Mars, 2018

 


  Key to SNP Markers

1TcSNP1075 2TcSNP534 3TcSNP591 4TcSNP42 5TcSNP418
6TcSNP702 7TcSNP1096 8TcSNP1060 9TcSNP1165 10TcSNP429
11TcSNP75 12TcSNP891 13TcSNP122 14TcSNP316 15TcSNP521
16TcSNP860 17TcSNP1062 18TcSNP836 19TcSNP878 20TcSNP929
21TcSNP413 22TcSNP653 23TcSNP1149 24TcSNP174 25TcSNP32
26TcSNP372 27TcSNP448 28TcSNP872 29TcSNP953 30TcSNP1034
31TcSNP1175 32TcSNP1111 33TcSNP577 34TcSNP90 35TcSNP998
36TcSNP150 37TcSNP28 38TcSNP751 39TcSNP1484 40TcSNP602
41TcSNP561 42TcSNP894 43TcSNP1063 44TcSNP1126 45TcSNP1270
46TcSNP606 47TcSNP329 48TcSNP689 49TcSNP944 50TcSNP1242
51TcSNP1383 52TcSNP547 53TcSNP1309 54TcSNP151 55TcSNP1520
56TcSNP799 57TcSNP899 58TcSNP226 59TcSNP1439 60TcSNP1442
61TcSNP193 62TcSNP25 63TcSNP364 64TcSNP144 65TcSNP230
66TcSNP560 67TcSNP723 68TcSNP731 69TcSNP701 70TcSNP1041
71TcSNP645 72TcSNP917 73Tcm003s01336581 74Tcm003s07402719 75Tcm001s00947643
76Tcm006s26664133 77Tcm002s20575712 78TcSNP529 79TcSNP1458 80TcSNP60
81TcSNP430 82TcSNP823 83TcSNP619 84TcSNP994 85TcSNP1144
86TcSNP1156 87TcSNP469 88TcSNP999 89TcSNP242 90TcSNP1253
91TcSNP1414 92TcSNP154 93TcSNP240