SNP Profiles of B 12 /1 [POU]   View Data

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 Key

 1234567891011121314
_Input profile
TTCTCCAAAATTTTCCTTAGTTTTTTTT
1._GC-05-093-2-44
TTCTCCAAAATTTTCCTTAGTTTTTTTT
2._GC-05-093-2-44
TTCTCCAAAATTTTCCTTAGTTTTTTTT
3._GC-05-093-2-44
TTCTCCAAAATTTTCCTTAGTTTTTTTT
4._GC-05-093-2-44
TTCTCCAAAATTTTCCTTAGTTTTTTTT
5._B_12_/1_[POU]
TTCTCC____CCTTAG_TT__
6._B_12_/1_[POU]
TTCTCC____CCTTAG_TT__
7._B_12_/1_[POU]
TTCTCC____CCTTAG_TT__
8._B_12_/1_[POU]
TTCTCC____CCTTAG_TT__
9._B_12_/1_[POU]
TTCTCC____CCTTAG_TT__
10._B_12_/1_[POU]
TTCTCC____CCTTAG_TT__
11._RUQ_1541
TTCTCC____CCTTAG_CT__
12._RUQ_1541
_CTCC__TT_CC__TTTT__
13._RUQ_1541
__CC__TT________
14._RUQ_1541
TT_CCAAAA_AAGG_AGAAAAAAAA
 1516171819202122232425262728
_Input profile
AAAAAGCGGGGGCCAACCGGAATTCCGG
1._GC-05-093-2-44
AAAAAGCGGGGGCCAACCGGAATTCCGG
2._GC-05-093-2-44
AAAAAGCGGGGGCCAACCGGAATTCCGG
3._GC-05-093-2-44
AAAAAGCGGGGGCCAACCGGAATTCCGG
4._GC-05-093-2-44
AAAAAGCGGGGGCCAACCGGAATTCCGG
5._B_12_/1_[POU]
__AG__GG____AATT_GG
6._B_12_/1_[POU]
__AG__GG____AATT_GG
7._B_12_/1_[POU]
__AG__GG____AATT_GG
8._B_12_/1_[POU]
__AG__GG____AATT_GG
9._B_12_/1_[POU]
__AG__GG____AATT_GG
10._B_12_/1_[POU]
__AG__GG____AATT_GG
11._RUQ_1541
__AG__GG____AATT_GG
12._RUQ_1541
____GG____GG_TTCCGG
13._RUQ_1541
__AGCT_________GG
14._RUQ_1541
AAAAAGCG_GGGGAAGGGGAATTGGCC
 2930313233343536373839404142
_Input profile
AATTTTAGGGCCAGGTGGTTGGCTGGGG
1._GC-05-093-2-44
AATTTTAGGGCCAGGTGGTTGGCTGGGG
2._GC-05-093-2-44
AATTTTAGGGCCAGGTGGTTGGCTGGGG
3._GC-05-093-2-44
AATTTTAGGGCCAGGTGGTTGGCTGGGG
4._GC-05-093-2-44
AATTTTAGGGCCAGGTGGTTGGCTGGGG
5._B_12_/1_[POU]
AA___GG_AGGT__GG___
6._B_12_/1_[POU]
AA___GG_AGGT__GG___
7._B_12_/1_[POU]
AA___GG_AGGT__GG___
8._B_12_/1_[POU]
AA___GG_AGGT__GG___
9._B_12_/1_[POU]
AA___GG_AGGT__GG___
10._B_12_/1_[POU]
AA___GG_AGGT__GG___
11._RUQ_1541
AA___GG_AGGT__GG___
12._RUQ_1541
___AGGGCCAGGT__GGCT__
13._RUQ_1541
____GG_AG____CT__
14._RUQ_1541
AAAAAAAGGGCCAGACCCAAGGAGGGCC
 4344454647484950515253545556
_Input profile
TTATCCAAGGGGCTACGGAGTTTTCTCC
1._GC-05-093-2-44
TTATCCAAGGGGCTACGGAGTTTTCTCC
2._GC-05-093-2-44
_ATCCAAGGGGCTACGGAGTTTTCTCC
3._GC-05-093-2-44
TTATCCAAGGGGCTACGGAGTTTT_CC
4._GC-05-093-2-44
TTATCCAAGGGGCTACGGAG_TTCTCC
5._B_12_/1_[POU]
__CC_________CTCC
6._B_12_/1_[POU]
__CC_________CTCC
7._B_12_/1_[POU]
__CC_________CTCC
8._B_12_/1_[POU]
__CC_________CTCC
9._B_12_/1_[POU]
__CC_________CTCC
10._B_12_/1_[POU]
__CC__________CC
11._RUQ_1541
__CC_________CTCC
12._RUQ_1541
TTAT__GG______CTCT_
13._RUQ_1541
____GG_________
14._RUQ_1541
AA_GG_GGAAAG_GGAGAAAGAGGG
 5758596061626364656667686970
_Input profile
TTAGCCTTCTAAGGGGCCAAGTGTAGTT
1._GC-05-093-2-44
TTAGCCTTCTAAGGGGCCAAGTGTAGTT
2._GC-05-093-2-44
TTAGCCTTCTAAGGGGCCAAGTGTAGTT
3._GC-05-093-2-44
TTAGCCTTCTAAGGGGCCAAGTGTAGTT
4._GC-05-093-2-44
TTAGCCTTCTAAGGGGCCAAGTGTAGTT
5._B_12_/1_[POU]
__CC_CTAAGG_CCAAGTGT__
6._B_12_/1_[POU]
__CC_CTAAGG_CCAAGTGT__
7._B_12_/1_[POU]
__CC_CTAAGG_CCAAGTGT__
8._B_12_/1_[POU]
__CC_CTAAGG_CCAAGTGT__
9._B_12_/1_[POU]
__CC_CTAAGG_CCAAGTGT__
10._B_12_/1_[POU]
__CC_CTAAGG_CCAAGTGT__
11._RUQ_1541
__CC_CTAAGG_CCAAGTGT__
12._RUQ_1541
TT-CCTTCTAA_GGCCAAGTGTAG_
13._RUQ_1541
_AG______CCAA_GTAG_
14._RUQ_1541
AAAGGGAAAGAAGGGGCCAAACACAG_
 7172737475767778798081828384
_Input profile
CCAACTCCAGCCCCAACCCGCCAACCCC
1._GC-05-093-2-44
CCAACTCCAGCCCCAACCCGCCAACCCC
2._GC-05-093-2-44
CCAACTCCAGCCCCAACCCGCCAACCCC
3._GC-05-093-2-44
CCAACTCCAGCCCCAACCCGCCAACCCC
4._GC-05-093-2-44
CCAACTCCAGCCCCAACCCGCCAACCCC
5._B_12_/1_[POU]
_AACT_____CCCG___CC
6._B_12_/1_[POU]
_AACT_____CCCG___CC
7._B_12_/1_[POU]
_AACT_____CCCG___CC
8._B_12_/1_[POU]
_AACT_____CCCG___CC
9._B_12_/1_[POU]
_AACT_____CCCG___CC
10._B_12_/1_[POU]
_AACT_____CCCG___CC
11._RUQ_1541
_AACT_____CCCG___CC
12._RUQ_1541
________CCCG__CCCC
13._RUQ_1541
_AA______CCCG__CC_
14._RUQ_1541
__AGCCAGCCCC_CCCGGGAACCGG
 85868788899091929394    
_Input profile
CTCCTTAACTCCGTTTATGGX_XX_XX_XX_X
1._GC-05-093-2-44
CTCCTTAACTCCGTTTATGGX_XX_XX_XX_X
2._GC-05-093-2-44
CTCCTTAACTCCGTTTATGGX_XX_XX_XX_X
3._GC-05-093-2-44
CTCCTTAACTCCGTTTATGGX_XX_XX_XX_X
4._GC-05-093-2-44
CTCCTTAACTCCGTTTATGGX_XX_XX_XX_X
5._B_12_/1_[POU]
CTCC_AA_CCGTTT__X_XX_XX_XX_X
6._B_12_/1_[POU]
CTCC_AA_CCGTTT__X_XX_XX_XX_X
7._B_12_/1_[POU]
CTCC_AA_CCGTTT__X_XX_XX_XX_X
8._B_12_/1_[POU]
CTCC_AA_CCGTTT__X_XX_XX_XX_X
9._B_12_/1_[POU]
CTCC_AA_CCGTTT__X_XX_XX_XX_X
10._B_12_/1_[POU]
CTCC_AA_CCGTTT__X_XX_XX_XX_X
11._RUQ_1541
CTCC_AA_CCGTTT__X_XX_XX_XX_X
12._RUQ_1541
___AACCCCGT___X_XX_XX_XX_X
13._RUQ_1541
_CC__CT_GT___X_XX_XX_XX_X
14._RUQ_1541
AG_AA__GGACAAATGGX_XX_XX_XX_X

Input profile: B_12_/1_[POU] GC-05-093-2-44

 
Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1 > FP1
 Mars, 2018

1._B_12_/1_[POU] GC-05-093-2-44

identical
94 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: 4
 Mars, 2018

2._B_12_/1_[POU] GC-05-093-2-44

identical
93 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2
 Mars, 2018

3._B_12_/1_[POU] GC-05-093-2-44

identical
93 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3
 Mars, 2018

4._B_12_/1_[POU] GC-05-093-2-44

identical
93 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 5
Notes: 5
 Mars, 2018

5._B_12_/1_[POU]

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 5244 1 > FP
 Dapeng Zhang, 2016

6._B_12_/1_[POU]

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 5244 5
 Dapeng Zhang, 2016

7._B_12_/1_[POU]

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 5244 4
 Dapeng Zhang, 2016

8._B_12_/1_[POU]

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 5244 2
 Dapeng Zhang, 2016
Population Assignment: 
 Dapeng Zhang, 2016

9._B_12_/1_[POU]

identical
39 shared markers

International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: 6B F461 T10
 Dapeng Zhang, 2016

10._B_12_/1_[POU]

identical
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: 5244 3
 Dapeng Zhang, 2016

11._B_12_/1_[POU] RUQ_1541

98.7 %
39 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2016

12._B_12_/1_[POU] RUQ_1541

97.6 %
42 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

13._B_12_/1_[POU] RUQ_1541

95.2 %
21 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Lambert Motilal, 2023

14._B_12_/1_[POU] RUQ_1541

51.3 %
80 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
Notes: Reading_Collection
 Mars, 2018

 


  Key to SNP Markers

1TcSNP1075 2TcSNP534 3TcSNP591 4TcSNP42 5TcSNP418
6TcSNP702 7TcSNP1096 8TcSNP1060 9TcSNP1165 10TcSNP429
11TcSNP75 12TcSNP891 13TcSNP122 14TcSNP316 15TcSNP521
16TcSNP860 17TcSNP1062 18TcSNP836 19TcSNP878 20TcSNP929
21TcSNP413 22TcSNP653 23TcSNP1149 24TcSNP174 25TcSNP32
26TcSNP372 27TcSNP448 28TcSNP872 29TcSNP953 30TcSNP1034
31TcSNP1175 32TcSNP1111 33TcSNP577 34TcSNP90 35TcSNP998
36TcSNP150 37TcSNP28 38TcSNP751 39TcSNP1484 40TcSNP602
41TcSNP561 42TcSNP894 43TcSNP1063 44TcSNP1126 45TcSNP1270
46TcSNP606 47TcSNP329 48TcSNP689 49TcSNP944 50TcSNP1242
51TcSNP1383 52TcSNP547 53TcSNP776 54TcSNP1309 55TcSNP151
56TcSNP1520 57TcSNP799 58TcSNP899 59TcSNP226 60TcSNP1439
61TcSNP1442 62TcSNP193 63TcSNP25 64TcSNP364 65TcSNP144
66TcSNP230 67TcSNP560 68TcSNP723 69TcSNP731 70TcSNP701
71TcSNP1041 72TcSNP645 73TcSNP917 74Tcm003s01336581 75Tcm003s07402719
76Tcm001s00947643 77Tcm006s26664133 78Tcm002s20575712 79TcSNP529 80TcSNP1458
81TcSNP60 82TcSNP430 83TcSNP823 84TcSNP619 85TcSNP994
86TcSNP1144 87TcSNP1156 88TcSNP469 89TcSNP999 90TcSNP242
91TcSNP1253 92TcSNP1414 93TcSNP154 94TcSNP240