SNP Profiles of MO-9   View Data

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 Key

 1234567891011121314
_Input profile
AAACCTCCGGGGCCCCCCCCGGTTCCTT
1._GC-05-119-3-21
AAACCTCCGGGGCCCCCCCCGGTTCCTT
2._GC-05-119-3-21
AAACCTCCGGGGCCCCCCCCGGTTCCTT
3._GC-05-119-3-21
AAACCTCCGGGGCCCCCCCCGGTTCCTT
4._GC-05-071-2-22
AAACCTCCGGGGCCCCCCCCGGTTCCTT
5._MO_9
AAACCTCC____CCCCGG_CC_
6._MO_9
AAACCTCC____CCCCGG_CC_
7._MO_9
AAACCTCC____CCCCGG_CC_
8._MO_9
AAACCTCC____CCCCGG_CC_
9._MO_9
AAACCTCC____CCCCGG_CC_
10._MO_9
AAACCTCC____CCCCGG_CC_
11._RUQ_1691
___CC__CT_______
12._GC-05-119-3-21
AAACCTACGGAGCTCTCTCTAGCTCTCT
13._GC-05-071-2-22
AAACCTACGGAGCTCTCTCTAGCTCTCT
14._GC-05-071-2-22
AAACCTACGGAGCTCTCTCTAGCTCTCT
15._GC-05-071-2-22
AAACCTACGGAGCTCTCTCTAGCTCTCT
16._GC-05-071-2-22
_ACCTACGGAGCTCTCTCTAGCTCTCT
17._MO_9
AAACCTAC____CTCTAG_CT_
18._MO_9
AAACCTAC____CTCTAG_CT_
19._MO_9
AAACCTAC____CTCTAG_CT_
20._MO_9
AAACCTAC____CTCTAG_CT_
21._MO_9
_ACCTAC____CTCTAG_CT_
22._RUQ_1691
AAAC_CCGGGG_GGGG_GGAAGGAA
 1516171819202122232425262728
_Input profile
AACCAAGGGGCCCGTTAATTGGAAAACC
1._GC-05-119-3-21
AACCAAGGGGCCCGTTAATTGGAAAACC
2._GC-05-119-3-21
AACCAAGGGGCCCGTTAATTGGAAAACC
3._GC-05-119-3-21
AACCAAGGGGCCCGTTAATTGGAAAACC
4._GC-05-071-2-22
AACCAAGGGGCCCGTTAATTGGAAAACC
5._MO_9
___GG__CG____AAAA_
6._MO_9
___GG__CG____AAAA_
7._MO_9
___GG__CG____AAAA_
8._MO_9
___GG__CG____AAAA_
9._MO_9
___GG__CG____AAAA_
10._MO_9
___GG__CG____AAAA_
11._RUQ_1691
___GGTT_________
12._GC-05-119-3-21
ATACAAAGCGCCCGCTAATTGGATATGG
13._GC-05-071-2-22
ATACAAAGCGCCCGCTAATTGGATATGG
14._GC-05-071-2-22
ATACAAAGCGCCCGCTAATTGGATATGG
15._GC-05-071-2-22
ATACAAAGCGCCCGCTAATTGGATATGG
16._GC-05-071-2-22
ATACAAAGCGCCCGCTAATTGGATATGG
17._MO_9
___AG__CG____ATAT_
18._MO_9
___AG__CG____ATAT_
19._MO_9
___AG__CG____ATAT_
20._MO_9
___AG__CG____ATAT_
21._MO_9
___AG__CG____ATAT_
22._RUQ_1691
TTCCAGGGCC_CGAAAAAAGGAAAAGG
 2930313233343536373839404142
_Input profile
GGAATTTTAGGGCCAGGTGGGTGGTTGG
1._GC-05-119-3-21
GGAATTTTAGGGCCAGGTGGGTGGTTGG
2._GC-05-119-3-21
GGAATTTTAGGGCCAGGTGGGTGGTTGG
3._GC-05-119-3-21
GGAATTTTAGGGCCAGGTGGGTGGTTGG
4._GC-05-071-2-22
GGAATTTTAGGGCCAGGTGGGTGGTTGG
5._MO_9
GGAA___GG_AGGT__GG__
6._MO_9
GGAA___GG_AGGT__GG__
7._MO_9
GGAA___GG_AGGT__GG__
8._MO_9
GGAA___GG_AGGT__GG__
9._MO_9
GGAA___GG_AGGT__GG__
10._MO_9
GGAA___GG_AGGT__GG__
11._RUQ_1691
GG____GG_AG____TT_
12._GC-05-119-3-21
CCATTTGTAGCGACAGGGGTGTAACCAG
13._GC-05-071-2-22
CCATTTGTAGCGACAGGGGTGTAACCAG
14._GC-05-071-2-22
CCATTTGTAGCGACAGGGGTGTAACCAG
15._GC-05-071-2-22
CCATTTGTAGCGACAGGGGTGTAACCAG
16._GC-05-071-2-22
CCATTTGTAGCGACAGGGGTGTAACCAG
17._MO_9
CCAT___CG_AGGG__AA__
18._MO_9
CCAT___CG_AGGG__AA__
19._MO_9
CCAT___CG_AGGG__AA__
20._MO_9
CCAT___CG_AGGG__AA__
21._MO_9
CCAT___CG_AGGG__AA__
22._RUQ_1691
CCAAAAAAAGGGCCAGACCCACGGAAGG
 4344454647484950515253545556
_Input profile
CCGGTTCCAAGGAACCCCGGAGGGCCCC
1._GC-05-119-3-21
CCGGTTCCAAGGAACCCCGGAGGGCCCC
2._GC-05-119-3-21
CCGGTTCCAAGGAACCCCGGAGGGCCCC
3._GC-05-119-3-21
CCGGTTCCAAGGAACCCCGGAGGGCCCC
4._GC-05-071-2-22
CCGGTTCCAAGGAACCCCGGAGGGCCCC
5._MO_9
___CC________CCCC
6._MO_9
___CC________CCCC
7._MO_9
___CC________CCCC
8._MO_9
___CC________CCCC
9._MO_9
___CC________CCCC
10._MO_9
___CC________CCCC
11._RUQ_1691
_____GG________
12._GC-05-119-3-21
CCGGATCCAGAAAACTACAGAGGGCTCT
13._GC-05-071-2-22
CCGGATCCAGAAAACTACAGAGGGCTCT
14._GC-05-071-2-22
CCGGATCCAGAAAACTACAGAGGGCTCT
15._GC-05-071-2-22
CCGGATCCAGAAAACTACAGAGGGCTCT
16._GC-05-071-2-22
CCGGATCCAGAAAACTACAGAGGGCTCT
17._MO_9
___CC________CTCT
18._MO_9
___CC________CTCT
19._MO_9
___CC________CTCT
20._MO_9
___CC________CTCT
21._MO_9
___CC________CTCT
22._RUQ_1691
GGCC_GG_GGAAGG_GGAGCCGGGG
 5758596061626364656667686970
_Input profile
TTGGCCCTCTAAGGGGACAAGTGGAGCT
1._GC-05-119-3-21
TTGGCCCTCTAAGGGGACAAGTGGAGCT
2._GC-05-119-3-21
TTGGCCCTCTAAGGGGACAAGTGGAGCT
3._GC-05-119-3-21
TTGGCCCTCT_GGGGACAAGTGGAGCT
4._GC-05-071-2-22
TT_CCCTCTAAGGGGACAAGTGGAGCT
5._MO_9
__CC_CTAAGG_ACAAGTGG__
6._MO_9
__CC_CTAAGG_ACAAGTGG__
7._MO_9
__CC_CTAAGG_ACAAGTGG__
8._MO_9
__CC_CTAAGG_ACAAGTGG__
9._MO_9
__CC_CT_GG_ACAAGTGG__
10._MO_9
____CTACGG_ACAAGTGG__
11._RUQ_1691
_GG______ACAA_GGAG_
12._GC-05-119-3-21
TTAGCGCTTTACCGAGAAAGGTGTAGCT
13._GC-05-071-2-22
TTAGCGCTTTACCGAGAAAGGTGTAGCT
14._GC-05-071-2-22
TTAGCGCTTTACCGAGAAAGGTGTAGCT
15._GC-05-071-2-22
TTAGCGCTTTACCGAGAAAGGTGTAGCT
16._GC-05-071-2-22
TTAGCGCTTTACCGAGAAAGGTGTAGCT
17._MO_9
__CG_TTACCG_AAAGGTGT__
18._MO_9
__CG_TTACCG_AAAGGTGT__
19._MO_9
__CG_TTACCG_AAAGGTGT__
20._MO_9
__CG_TTACCG_AAAGGTGT__
21._MO_9
__CG_TTACCG_AAAGGTGT__
22._RUQ_1691
AAGGGGAGAGACGGGGACAAACCCAG_
 7172737475767778798081828384
_Input profile
CCAACTCCAGCCACGGCCCGCCTTAATT
1._GC-05-119-3-21
CCAACTCCAGCCACGGCCCGCCTTAATT
2._GC-05-119-3-21
CCAACTCCAGCCACGGCCCGCCTTAATT
3._GC-05-119-3-21
CCAACTCCAGCCACGGCCCGCCTTAATT
4._GC-05-071-2-22
CCAACTCCAGCCACGGCCCGCCTTAATT
5._MO_9
_AACT_____CCCG___TT
6._MO_9
_AACT_____CCCG___TT
7._MO_9
_AACT_____CCCG___TT
8._MO_9
_AACT_____CCCG___TT
9._MO_9
_AACT_____CCCG___TT
10._MO_9
_AACT_____CCCG___TT
11._RUQ_1691
_AA______CCCG__AA_
12._GC-05-119-3-21
CCAACTACGGCCACAAACCGCTAAACTT
13._GC-05-071-2-22
CCAACTACGGCCACAAACCGCTAAACTT
14._GC-05-071-2-22
CCAACTACGGCCACAAACCGCTAAACTT
15._GC-05-071-2-22
CCAACTACGGCCACAAACCGCTAAACTT
16._GC-05-071-2-22
CCAACTACGGCCACAAACCGCTAAACTT
17._MO_9
_AACT_____ACCG___TT
18._MO_9
_AACT_____ACCG___TT
19._MO_9
_AACT_____ACCG___TT
20._MO_9
_AACT_____ACCG___TT
21._MO_9
_AACT_____ACCG___TT
22._RUQ_1691
__AGCCAGCCAC_CCCGGGTTAAAA
 85868788899091929394    
_Input profile
CTCCCCAACTCCTTTTAAGGX_XX_XX_XX_X
1._GC-05-119-3-21
CTCCCCAACTCCTTTTAAGGX_XX_XX_XX_X
2._GC-05-119-3-21
CTCCCCAACTCCTTTTAAGGX_XX_XX_XX_X
3._GC-05-119-3-21
CTCCCCAACTCCTTTTAAGGX_XX_XX_XX_X
4._GC-05-071-2-22
CTCCCCAACTCCTTTTAAGGX_XX_XX_XX_X
5._MO_9
CTCC_AA_CCTTTT__X_XX_XX_XX_X
6._MO_9
CTCC_AA_CCTTTT__X_XX_XX_XX_X
7._MO_9
CTCC_AA_CCTTTT__X_XX_XX_XX_X
8._MO_9
CTCC_AA_CCTTTT__X_XX_XX_XX_X
9._MO_9
CTCC_AA_CCTTTT__X_XX_XX_XX_X
10._MO_9
CTCC_AA_CCTTTT__X_XX_XX_XX_X
11._RUQ_1691
_CC__CT_TT___X_XX_XX_XX_X
12._GC-05-119-3-21
CTCTCTAGCCCTGTCTATGGX_XX_XX_XX_X
13._GC-05-071-2-22
CTCTCTAGCCCTGTCTATGGX_XX_XX_XX_X
14._GC-05-071-2-22
CTCTCTAGCCCTGTCTATGGX_XX_XX_XX_X
15._GC-05-071-2-22
CTCTCTAGCCCTGTCTATGGX_XX_XX_XX_X
16._GC-05-071-2-22
CTCTCTAGCCCTGTCTATGGX_XX_XX_XX_X
17._MO_9
CTCT_AG_CTGTCT__X_XX_XX_XX_X
18._MO_9
CTCT_AG_CTGTCT__X_XX_XX_XX_X
19._MO_9
CTCT_AG_CTGTCT__X_XX_XX_XX_X
20._MO_9
CTCT_AG_CTGTCT__X_XX_XX_XX_X
21._MO_9
CTCT_AG_CTGTCT__X_XX_XX_XX_X
22._RUQ_1691
AG_GG__GGAAAATTGGX_XX_XX_XX_X

Input profile: MO_9 GC-05-071-2-22

 
Mars Center for Cocoa Science, Brazil
Location: Tree: 5
Notes: 5
 Mars, 2018

1._MO_9 GC-05-119-3-21

identical
94 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: 4 > FP3
 Mars, 2018

2._MO_9 GC-05-119-3-21

identical
94 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2
 Mars, 2018

3._MO_9 GC-05-119-3-21

identical
93 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3 > FP4
 Mars, 2018

4._MO_9 GC-05-071-2-22

identical
93 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1 > FP1
 Mars, 2018

5._MO_9

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 5222 5
 Dapeng Zhang, 2016
Population Assignment: 
 Dapeng Zhang, 2016

6._MO_9

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 5222 1 > FP
 Dapeng Zhang, 2016

7._MO_9

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 5321 2
 Dapeng Zhang, 2016

8._MO_9

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 5321 4 > FP
 Dapeng Zhang, 2016

9._MO_9

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 5321 3 > FP
 Dapeng Zhang, 2016

10._MO_9

98.7 %
39 shared markers

International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: Marper D835
 Dapeng Zhang, 2016

11._MO_9 RUQ_1691

92.9 %
21 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Lambert Motilal, 2023

12._MO_9 GC-05-119-3-21

64.4 %
94 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 5
Notes: 5
 Mars, 2018

13._MO_9 GC-05-071-2-22

64.4 %
94 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: 4 > FP4
 Mars, 2018

14._MO_9 GC-05-071-2-22

64.4 %
94 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3 > FP3
 Mars, 2018

15._MO_9 GC-05-071-2-22

64.4 %
94 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2 > FP2
 Mars, 2018

16._MO_9 GC-05-071-2-22

64 %
93 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2 > FP2
 Mars, 2018

17._MO_9

62.5 %
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 5222 2 > FP
 Dapeng Zhang, 2016
Population Assignment: 
 Dapeng Zhang, 2016

18._MO_9

62.5 %
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 5222 3 > FP
 Dapeng Zhang, 2016

19._MO_9

62.5 %
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 5222 4 > FP
 Dapeng Zhang, 2016

20._MO_9

62.5 %
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 5321 5
 Dapeng Zhang, 2016

21._MO_9

61.5 %
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 5222 2 > FP
 Dapeng Zhang, 2016
Population Assignment: 
 Dapeng Zhang, 2016

22._MO_9 RUQ_1691

50 %
80 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
Notes: Reading_Collection
 Mars, 2018

 


  Key to SNP Markers

1TcSNP1075 2TcSNP1350 3TcSNP534 4TcSNP591 5TcSNP42
6TcSNP418 7TcSNP702 8TcSNP1096 9TcSNP1060 10TcSNP1165
11TcSNP429 12TcSNP75 13TcSNP891 14TcSNP122 15TcSNP316
16TcSNP521 17TcSNP860 18TcSNP1062 19TcSNP836 20TcSNP878
21TcSNP929 22TcSNP413 23TcSNP653 24TcSNP1149 25TcSNP174
26TcSNP32 27TcSNP372 28TcSNP448 29TcSNP872 30TcSNP953
31TcSNP1034 32TcSNP1175 33TcSNP1111 34TcSNP577 35TcSNP90
36TcSNP998 37TcSNP150 38TcSNP28 39TcSNP751 40TcSNP1484
41TcSNP602 42TcSNP561 43TcSNP894 44TcSNP1063 45TcSNP1126
46TcSNP1270 47TcSNP606 48TcSNP329 49TcSNP689 50TcSNP944
51TcSNP1242 52TcSNP1383 53TcSNP547 54TcSNP776 55TcSNP151
56TcSNP1520 57TcSNP799 58TcSNP899 59TcSNP226 60TcSNP1439
61TcSNP1442 62TcSNP193 63TcSNP25 64TcSNP364 65TcSNP144
66TcSNP230 67TcSNP560 68TcSNP723 69TcSNP731 70TcSNP701
71TcSNP1041 72TcSNP645 73TcSNP917 74Tcm003s01336581 75Tcm003s07402719
76Tcm001s00947643 77Tcm006s26664133 78Tcm002s20575712 79TcSNP529 80TcSNP1458
81TcSNP60 82TcSNP430 83TcSNP823 84TcSNP619 85TcSNP994
86TcSNP1144 87TcSNP1156 88TcSNP469 89TcSNP999 90TcSNP242
91TcSNP1253 92TcSNP1414 93TcSNP154 94TcSNP240