SNP Profiles of MO 9   View Data

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 1234567891011121314
_Input profile
AAACCTACGGAGCTCTCTCTAGCTCTCT
1._GC-05-119-3-21
AAACCTACGGAGCTCTCTCTAGCTCTCT
2._GC-05-071-2-22
AAACCTACGGAGCTCTCTCTAGCTCTCT
3._GC-05-071-2-22
AAACCTACGGAGCTCTCTCTAGCTCTCT
4._GC-05-071-2-22
_ACCTACGGAGCTCTCTCTAGCTCTCT
5._MO_9
AAACCTAC____CTCTAG_CT_
6._MO_9
AAACCTAC____CTCTAG_CT_
7._MO_9
AAACCTAC____CTCTAG_CT_
8._MO_9
AAACCTAC____CTCTAG_CT_
9._MO_9
_ACCTAC____CTCTAG_CT_
10._GC-05-119-3-21
AAACCTCCGGGGCCCCCCCCGGTTCCTT
11._GC-05-071-2-22
AAACCTCCGGGGCCCCCCCCGGTTCCTT
12._GC-05-119-3-21
AAACCTCCGGGGCCCCCCCCGGTTCCTT
13._GC-05-119-3-21
AAACCTCCGGGGCCCCCCCCGGTTCCTT
14._GC-05-071-2-22
AAACCTCCGGGGCCCCCCCCGGTTCCTT
15._MO_9
AAACCTCC____CCCCGG_CC_
16._MO_9
AAACCTCC____CCCCGG_CC_
17._MO_9
AAACCTCC____CCCCGG_CC_
18._MO_9
AAACCTCC____CCCCGG_CC_
19._MO_9
AAACCTCC____CCCCGG_CC_
20._MO_9
AAACCTCC____CCCCGG_CC_
21._RUQ_1691
___CC__CT_______
22._RUQ_1691
AAAC_CCGGGG_GGGG_GGAAGGAA
 1516171819202122232425262728
_Input profile
ATACAAAGCGCCCGCTAATTGGATATGG
1._GC-05-119-3-21
ATACAAAGCGCCCGCTAATTGGATATGG
2._GC-05-071-2-22
ATACAAAGCGCCCGCTAATTGGATATGG
3._GC-05-071-2-22
ATACAAAGCGCCCGCTAATTGGATATGG
4._GC-05-071-2-22
ATACAAAGCGCCCGCTAATTGGATATGG
5._MO_9
___AG__CG____ATAT_
6._MO_9
___AG__CG____ATAT_
7._MO_9
___AG__CG____ATAT_
8._MO_9
___AG__CG____ATAT_
9._MO_9
___AG__CG____ATAT_
10._GC-05-119-3-21
AACCAAGGGGCCCGTTAATTGGAAAACC
11._GC-05-071-2-22
AACCAAGGGGCCCGTTAATTGGAAAACC
12._GC-05-119-3-21
AACCAAGGGGCCCGTTAATTGGAAAACC
13._GC-05-119-3-21
AACCAAGGGGCCCGTTAATTGGAAAACC
14._GC-05-071-2-22
AACCAAGGGGCCCGTTAATTGGAAAACC
15._MO_9
___GG__CG____AAAA_
16._MO_9
___GG__CG____AAAA_
17._MO_9
___GG__CG____AAAA_
18._MO_9
___GG__CG____AAAA_
19._MO_9
___GG__CG____AAAA_
20._MO_9
___GG__CG____AAAA_
21._RUQ_1691
___GGTT_________
22._RUQ_1691
TTCCAGGGCC_CGAAAAAAGGAAAAGG
 2930313233343536373839404142
_Input profile
CCATTTGTAGCGACAGGGGTGTAACCAG
1._GC-05-119-3-21
CCATTTGTAGCGACAGGGGTGTAACCAG
2._GC-05-071-2-22
CCATTTGTAGCGACAGGGGTGTAACCAG
3._GC-05-071-2-22
CCATTTGTAGCGACAGGGGTGTAACCAG
4._GC-05-071-2-22
CCATTTGTAGCGACAGGGGTGTAACCAG
5._MO_9
CCAT___CG_AGGG__AA__
6._MO_9
CCAT___CG_AGGG__AA__
7._MO_9
CCAT___CG_AGGG__AA__
8._MO_9
CCAT___CG_AGGG__AA__
9._MO_9
CCAT___CG_AGGG__AA__
10._GC-05-119-3-21
GGAATTTTAGGGCCAGGTGGGTGGTTGG
11._GC-05-071-2-22
GGAATTTTAGGGCCAGGTGGGTGGTTGG
12._GC-05-119-3-21
GGAATTTTAGGGCCAGGTGGGTGGTTGG
13._GC-05-119-3-21
GGAATTTTAGGGCCAGGTGGGTGGTTGG
14._GC-05-071-2-22
GGAATTTTAGGGCCAGGTGGGTGGTTGG
15._MO_9
GGAA___GG_AGGT__GG__
16._MO_9
GGAA___GG_AGGT__GG__
17._MO_9
GGAA___GG_AGGT__GG__
18._MO_9
GGAA___GG_AGGT__GG__
19._MO_9
GGAA___GG_AGGT__GG__
20._MO_9
GGAA___GG_AGGT__GG__
21._RUQ_1691
GG____GG_AG____TT_
22._RUQ_1691
CCAAAAAAAGGGCCAGACCCACGGAAGG
 4344454647484950515253545556
_Input profile
CCGGATCCAGAAAACTACAGAGGGCTCT
1._GC-05-119-3-21
CCGGATCCAGAAAACTACAGAGGGCTCT
2._GC-05-071-2-22
CCGGATCCAGAAAACTACAGAGGGCTCT
3._GC-05-071-2-22
CCGGATCCAGAAAACTACAGAGGGCTCT
4._GC-05-071-2-22
CCGGATCCAGAAAACTACAGAGGGCTCT
5._MO_9
___CC________CTCT
6._MO_9
___CC________CTCT
7._MO_9
___CC________CTCT
8._MO_9
___CC________CTCT
9._MO_9
___CC________CTCT
10._GC-05-119-3-21
CCGGTTCCAAGGAACCCCGGAGGGCCCC
11._GC-05-071-2-22
CCGGTTCCAAGGAACCCCGGAGGGCCCC
12._GC-05-119-3-21
CCGGTTCCAAGGAACCCCGGAGGGCCCC
13._GC-05-119-3-21
CCGGTTCCAAGGAACCCCGGAGGGCCCC
14._GC-05-071-2-22
CCGGTTCCAAGGAACCCCGGAGGGCCCC
15._MO_9
___CC________CCCC
16._MO_9
___CC________CCCC
17._MO_9
___CC________CCCC
18._MO_9
___CC________CCCC
19._MO_9
___CC________CCCC
20._MO_9
___CC________CCCC
21._RUQ_1691
_____GG________
22._RUQ_1691
GGCC_GG_GGAAGG_GGAGCCGGGG
 5758596061626364656667686970
_Input profile
TTAGCGCTTTACCGAGAAAGGTGTAGCT
1._GC-05-119-3-21
TTAGCGCTTTACCGAGAAAGGTGTAGCT
2._GC-05-071-2-22
TTAGCGCTTTACCGAGAAAGGTGTAGCT
3._GC-05-071-2-22
TTAGCGCTTTACCGAGAAAGGTGTAGCT
4._GC-05-071-2-22
TTAGCGCTTTACCGAGAAAGGTGTAGCT
5._MO_9
__CG_TTACCG_AAAGGTGT__
6._MO_9
__CG_TTACCG_AAAGGTGT__
7._MO_9
__CG_TTACCG_AAAGGTGT__
8._MO_9
__CG_TTACCG_AAAGGTGT__
9._MO_9
__CG_TTACCG_AAAGGTGT__
10._GC-05-119-3-21
TTGGCCCTCT_GGGGACAAGTGGAGCT
11._GC-05-071-2-22
TT_CCCTCTAAGGGGACAAGTGGAGCT
12._GC-05-119-3-21
TTGGCCCTCTAAGGGGACAAGTGGAGCT
13._GC-05-119-3-21
TTGGCCCTCTAAGGGGACAAGTGGAGCT
14._GC-05-071-2-22
TTGGCCCTCTAAGGGGACAAGTGGAGCT
15._MO_9
____CTACGG_ACAAGTGG__
16._MO_9
__CC_CT_GG_ACAAGTGG__
17._MO_9
__CC_CTAAGG_ACAAGTGG__
18._MO_9
__CC_CTAAGG_ACAAGTGG__
19._MO_9
__CC_CTAAGG_ACAAGTGG__
20._MO_9
__CC_CTAAGG_ACAAGTGG__
21._RUQ_1691
_GG______ACAA_GGAG_
22._RUQ_1691
AAGGGGAGAGACGGGGACAAACCCAG_
 7172737475767778798081828384
_Input profile
CCAACTACGGCCACAAACCGCTAAACTT
1._GC-05-119-3-21
CCAACTACGGCCACAAACCGCTAAACTT
2._GC-05-071-2-22
CCAACTACGGCCACAAACCGCTAAACTT
3._GC-05-071-2-22
CCAACTACGGCCACAAACCGCTAAACTT
4._GC-05-071-2-22
CCAACTACGGCCACAAACCGCTAAACTT
5._MO_9
_AACT_____ACCG___TT
6._MO_9
_AACT_____ACCG___TT
7._MO_9
_AACT_____ACCG___TT
8._MO_9
_AACT_____ACCG___TT
9._MO_9
_AACT_____ACCG___TT
10._GC-05-119-3-21
CCAACTCCAGCCACGGCCCGCCTTAATT
11._GC-05-071-2-22
CCAACTCCAGCCACGGCCCGCCTTAATT
12._GC-05-119-3-21
CCAACTCCAGCCACGGCCCGCCTTAATT
13._GC-05-119-3-21
CCAACTCCAGCCACGGCCCGCCTTAATT
14._GC-05-071-2-22
CCAACTCCAGCCACGGCCCGCCTTAATT
15._MO_9
_AACT_____CCCG___TT
16._MO_9
_AACT_____CCCG___TT
17._MO_9
_AACT_____CCCG___TT
18._MO_9
_AACT_____CCCG___TT
19._MO_9
_AACT_____CCCG___TT
20._MO_9
_AACT_____CCCG___TT
21._RUQ_1691
_AA______CCCG__AA_
22._RUQ_1691
__AGCCAGCCAC_CCCGGGTTAAAA
 85868788899091929394    
_Input profile
CTCTCTAGCCCTGTCTATGGX_XX_XX_XX_X
1._GC-05-119-3-21
CTCTCTAGCCCTGTCTATGGX_XX_XX_XX_X
2._GC-05-071-2-22
CTCTCTAGCCCTGTCTATGGX_XX_XX_XX_X
3._GC-05-071-2-22
CTCTCTAGCCCTGTCTATGGX_XX_XX_XX_X
4._GC-05-071-2-22
CTCTCTAGCCCTGTCTATGGX_XX_XX_XX_X
5._MO_9
CTCT_AG_CTGTCT__X_XX_XX_XX_X
6._MO_9
CTCT_AG_CTGTCT__X_XX_XX_XX_X
7._MO_9
CTCT_AG_CTGTCT__X_XX_XX_XX_X
8._MO_9
CTCT_AG_CTGTCT__X_XX_XX_XX_X
9._MO_9
CTCT_AG_CTGTCT__X_XX_XX_XX_X
10._GC-05-119-3-21
CTCCCCAACTCCTTTTAAGGX_XX_XX_XX_X
11._GC-05-071-2-22
CTCCCCAACTCCTTTTAAGGX_XX_XX_XX_X
12._GC-05-119-3-21
CTCCCCAACTCCTTTTAAGGX_XX_XX_XX_X
13._GC-05-119-3-21
CTCCCCAACTCCTTTTAAGGX_XX_XX_XX_X
14._GC-05-071-2-22
CTCCCCAACTCCTTTTAAGGX_XX_XX_XX_X
15._MO_9
CTCC_AA_CCTTTT__X_XX_XX_XX_X
16._MO_9
CTCC_AA_CCTTTT__X_XX_XX_XX_X
17._MO_9
CTCC_AA_CCTTTT__X_XX_XX_XX_X
18._MO_9
CTCC_AA_CCTTTT__X_XX_XX_XX_X
19._MO_9
CTCC_AA_CCTTTT__X_XX_XX_XX_X
20._MO_9
CTCC_AA_CCTTTT__X_XX_XX_XX_X
21._RUQ_1691
_CC__CT_TT___X_XX_XX_XX_X
22._RUQ_1691
AG_GG__GGAAAATTGGX_XX_XX_XX_X

Input profile: MO_9 GC-05-071-2-22

 
Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2 > FP2
 Mars, 2018

1._MO_9 GC-05-119-3-21

identical
94 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 5
Notes: 5
 Mars, 2018

2._MO_9 GC-05-071-2-22

identical
94 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: 4 > FP4
 Mars, 2018

3._MO_9 GC-05-071-2-22

identical
94 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3 > FP3
 Mars, 2018

4._MO_9 GC-05-071-2-22

identical
93 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2 > FP2
 Mars, 2018

5._MO_9

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 5222 2 > FP
 Dapeng Zhang, 2016
Population Assignment: 
 Dapeng Zhang, 2016

6._MO_9

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 5222 3 > FP
 Dapeng Zhang, 2016

7._MO_9

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 5222 4 > FP
 Dapeng Zhang, 2016

8._MO_9

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 5321 5
 Dapeng Zhang, 2016

9._MO_9

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 5222 2 > FP
 Dapeng Zhang, 2016
Population Assignment: 
 Dapeng Zhang, 2016

10._MO_9 GC-05-119-3-21

64.5 %
93 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3 > FP4
 Mars, 2018

11._MO_9 GC-05-071-2-22

64.5 %
93 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1 > FP1
 Mars, 2018

12._MO_9 GC-05-119-3-21

64.4 %
94 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: 4 > FP3
 Mars, 2018

13._MO_9 GC-05-119-3-21

64.4 %
94 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2
 Mars, 2018

14._MO_9 GC-05-071-2-22

64.4 %
94 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 5
Notes: 5
 Mars, 2018

15._MO_9

64.1 %
39 shared markers

International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: Marper D835
 Dapeng Zhang, 2016

16._MO_9

62.8 %
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 5321 3 > FP
 Dapeng Zhang, 2016

17._MO_9

62.5 %
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 5222 5
 Dapeng Zhang, 2016
Population Assignment: 
 Dapeng Zhang, 2016

18._MO_9

62.5 %
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 5222 1 > FP
 Dapeng Zhang, 2016

19._MO_9

62.5 %
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 5321 2
 Dapeng Zhang, 2016

20._MO_9

62.5 %
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 5321 4 > FP
 Dapeng Zhang, 2016

21._MO_9 RUQ_1691

52.4 %
21 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Lambert Motilal, 2023

22._MO_9 RUQ_1691

38.8 %
80 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
Notes: Reading_Collection
 Mars, 2018

 


  Key to SNP Markers

1TcSNP1075 2TcSNP1350 3TcSNP534 4TcSNP591 5TcSNP42
6TcSNP418 7TcSNP702 8TcSNP1096 9TcSNP1060 10TcSNP1165
11TcSNP429 12TcSNP75 13TcSNP891 14TcSNP122 15TcSNP316
16TcSNP521 17TcSNP860 18TcSNP1062 19TcSNP836 20TcSNP878
21TcSNP929 22TcSNP413 23TcSNP653 24TcSNP1149 25TcSNP174
26TcSNP32 27TcSNP372 28TcSNP448 29TcSNP872 30TcSNP953
31TcSNP1034 32TcSNP1175 33TcSNP1111 34TcSNP577 35TcSNP90
36TcSNP998 37TcSNP150 38TcSNP28 39TcSNP751 40TcSNP1484
41TcSNP602 42TcSNP561 43TcSNP894 44TcSNP1063 45TcSNP1126
46TcSNP1270 47TcSNP606 48TcSNP329 49TcSNP689 50TcSNP944
51TcSNP1242 52TcSNP1383 53TcSNP547 54TcSNP776 55TcSNP151
56TcSNP1520 57TcSNP799 58TcSNP899 59TcSNP226 60TcSNP1439
61TcSNP1442 62TcSNP193 63TcSNP25 64TcSNP364 65TcSNP144
66TcSNP230 67TcSNP560 68TcSNP723 69TcSNP731 70TcSNP701
71TcSNP1041 72TcSNP645 73TcSNP917 74Tcm003s01336581 75Tcm003s07402719
76Tcm001s00947643 77Tcm006s26664133 78Tcm002s20575712 79TcSNP529 80TcSNP1458
81TcSNP60 82TcSNP430 83TcSNP823 84TcSNP619 85TcSNP994
86TcSNP1144 87TcSNP1156 88TcSNP469 89TcSNP999 90TcSNP242
91TcSNP1253 92TcSNP1414 93TcSNP154 94TcSNP240