SNP Profiles of UF 12   View Data

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 Key

 1234567891011121314
_Input profile
AAAACTACAGAGCTCTCTGGCTCCCTAT
1._GC-05-070-2-21
AAAACTACAGAGCTCTCTGGCTCCCTAT
2._GC-05-070-2-21
AAAACTACAGAGCTCTCTGGCTCCCTAT
3._GC-05-070-2-21
AAAACTACAGAGCTCTCTGGCTCCCTAT
4._GC-05-070-2-21
AAAACTACAGAGCTCTCTGGCTCCCTAT
5._UF_12
AAAACTAC______CTCTGG__CC____
6._UF_12
AAAACTAC______CTCTGG__CC____
7._UF_12
AAAACTAC______CTCTGG__CC____
8._UF_12
AAAACTAC______CTCTGG__CC____
9._UF_12
AAAACTAC______CTCTGG__CC____
10._UF_12
AAAACTAC______CTCTGG__CC____
11._UF_12
AAAACTAC______CCCTGG__CT____
 1516171819202122232425262728
_Input profile
CCAAAAGGCGGGCTAGTTAGATATCGCG
1._GC-05-070-2-21
CCAAAAGGCGGGCTAGTTAGATATCGCG
2._GC-05-070-2-21
CCAAAAGGCGGGCTAGTTAGATATCGCG
3._GC-05-070-2-21
CCAAAAGGCGGGCTAGTTAGATATCGCG
4._GC-05-070-2-21
CCAAAAGGCGGGCTAGTTAGATATCGCG
5._UF_12
____AA____GG________ATAT__CG
6._UF_12
____AA____GG________ATAT__CG
7._UF_12
____AA____GG________ATAT__CG
8._UF_12
____AA____GG________ATAT__CG
9._UF_12
____AA____GG________ATAT__CG
10._UF_12
____AA____GG________ATAT__CG
11._UF_12
____GG____CG________ATAA__CG
 2930313233343536373839404142
_Input profile
AACTGTAGCCACAGGTGGGTAGCCAACC
1._GC-05-070-2-21
AACTGTAGCCACAGGTGGGTAGCCAACC
2._GC-05-070-2-21
AACTGTAGCCACAGGTGGGTAGCCAACC
3._GC-05-070-2-21
AACTGTAGCCACAGGTGGGTAGCCAACC
4._GC-05-070-2-21
AACTGTAGCCACAGGTGGGTAGCCAACC
5._UF_12
AA______CC__AGGT____AG______
6._UF_12
AA______CC__AGGT____AG______
7._UF_12
AA______CC__AGGT____AG______
8._UF_12
AA______CC__AGGT____AG______
9._UF_12
AA______CC__AGGT____AG______
10._UF_12
AA______CC__AGGT____AG______
11._UF_12
AA______GG__AAGT____AG______
 4344454647484950515253545556
_Input profile
GTATCCAGAGAGCTCCGGGGGTTTCTCT
1._GC-05-070-2-21
GTATCCAGAGAGCTCCGGGGGTTTCTCT
2._GC-05-070-2-21
GTATCCAGAGAGCTCCGGGGGTTTCTCT
3._GC-05-070-2-21
GTATCCAGAGAGCTCCGGGGGTTTCTCT
4._GC-05-070-2-21
GTATCCAGAGAGCTCCGGGGGTTTCTCT
5._UF_12
____CC__________________CTCT
6._UF_12
____CC__________________CTCT
7._UF_12
____CC__________________CTCT
8._UF_12
____CC__________________CTCT
9._UF_12
____CC__________________CTCT
10._UF_12
____CC__________________CTCT
11._UF_12
____TT__________________CTCC
 5758596061626364656667686970
_Input profile
GTAGCGCTCTACGGAGACAGGTGTAGCT
1._GC-05-070-2-21
GTAGCGCTCTACGGAGACAGGTGTAGCT
2._GC-05-070-2-21
GTAGCGCTCTACGGAGACAGGTGTAGCT
3._GC-05-070-2-21
GTAGCGCTCTACGGAGACAGGTGTAGCT
4._GC-05-070-2-21
GTAGCGCTCTACGGAGACAGGTGTAGCT
5._UF_12
____CG__CTACGG__ACAGGTGT____
6._UF_12
____CG__CTACGG__ACAGGTGT____
7._UF_12
____CG__CTACGG__ACAGGTGT____
8._UF_12
____CG__CTACGG__ACAGGTGT____
9._UF_12
____CG__CTACGG__ACAGGTGT____
10._UF_12
____CG__CTACGG__ACAGGTGT____
11._UF_12
____GG__TTCCGG__ACGGGGGT____
 7172737475767778798081828384
_Input profile
CCGGTTACAGACAAAGCCCGCTATACCT
1._GC-05-070-2-21
CCGGTTACAGACAAAGCCCGCTATACCT
2._GC-05-070-2-21
CCGGTTACAGACAAAGCCCGCTATACCT
3._GC-05-070-2-21
CCGGTTACAGACAAAGCCCGCTATACCT
4._GC-05-070-2-21
CCGGTTACAGACAAAGCCCGCTATACCT
5._UF_12
__GGTT__________CCCG______CT
6._UF_12
__GGTT__________CCCG______CT
7._UF_12
__GGTT__________CCCG______CT
8._UF_12
__GGTT__________CCCG______CT
9._UF_12
__AGTT__________CCGG______CT
10._UF_12
__AGTT__________CCGG______CT
11._UF_12
__AACT__________ACCC______CT
 85868788899091929394    
_Input profile
CTCTTTAGCTCTGTTTATGGX_XX_XX_XX_X
1._GC-05-070-2-21
CTCTTTAGCTCTGTTTATGGX_XX_XX_XX_X
2._GC-05-070-2-21
CTCTTTAGCTCTGTTTATGGX_XX_XX_XX_X
3._GC-05-070-2-21
CTCTTTAGCTCTGTTTATGGX_XX_XX_XX_X
4._GC-05-070-2-21
CTCTTTAGCTCTGTTTATGGX_XX_XX_XX_X
5._UF_12
CTCT__AG__CTGTTT____X_XX_XX_XX_X
6._UF_12
CTCT__AG__CTGTTT____X_XX_XX_XX_X
7._UF_12
CTCT__AG__CTGTTT____X_XX_XX_XX_X
8._UF_12
CTCT__AG__CTGTTT____X_XX_XX_XX_X
9._UF_12
CTCT__AG__CTGTTT____X_XX_XX_XX_X
10._UF_12
CTTT__AG__CTGTTT____X_XX_XX_XX_X
11._UF_12
TTCC__AG__CCGGCT____X_XX_XX_XX_X

Input profile: UF_12 GC-05-070-2-21

 
Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1 > FP1
 Mars, 2018

1._UF_12 GC-05-070-2-21

identical
94 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2 > FP2
 Mars, 2018

2._UF_12 GC-05-070-2-21

identical
94 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3 > FP3
 Mars, 2018

3._UF_12 GC-05-070-2-21

identical
94 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: 4 > FP4
 Mars, 2018

4._UF_12 GC-05-070-2-21

identical
94 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 5
Notes: 5
 Mars, 2018

5._UF_12

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 5221 1 > FP
 Dapeng Zhang, 2016
Population Assignment: 
 Dapeng Zhang, 2016

6._UF_12

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 5221 2 > FP
 Dapeng Zhang, 2016

7._UF_12

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 5221 3 > FP
 Dapeng Zhang, 2016

8._UF_12

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 5221 4 > FP
 Dapeng Zhang, 2016

9._UF_12

97.5 %
40 shared markers

International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: 6B F444 T5
 Dapeng Zhang, 2016

10._UF_12

96.3 %
40 shared markers

Centro Agronómico Tropical de Investigación y Enseñanza (CATIE), Costa Rica
Location: Cabiria
 Dapeng Zhang, 2016

11._UF_12

66.3 %
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 5221 5
 Dapeng Zhang, 2016

 


  Key to SNP Markers

1TcSNP1075 2TcSNP1350 3TcSNP534 4TcSNP591 5TcSNP42
6TcSNP418 7TcSNP702 8TcSNP1060 9TcSNP1165 10TcSNP429
11TcSNP75 12TcSNP891 13TcSNP122 14TcSNP316 15TcSNP521
16TcSNP860 17TcSNP1062 18TcSNP836 19TcSNP878 20TcSNP929
21TcSNP413 22TcSNP653 23TcSNP1149 24TcSNP174 25TcSNP32
26TcSNP372 27TcSNP448 28TcSNP872 29TcSNP953 30TcSNP1034
31TcSNP1175 32TcSNP1111 33TcSNP577 34TcSNP90 35TcSNP998
36TcSNP150 37TcSNP28 38TcSNP751 39TcSNP1484 40TcSNP602
41TcSNP561 42TcSNP894 43TcSNP1063 44TcSNP1126 45TcSNP1270
46TcSNP606 47TcSNP329 48TcSNP689 49TcSNP944 50TcSNP1242
51TcSNP1383 52TcSNP547 53TcSNP776 54TcSNP1309 55TcSNP151
56TcSNP1520 57TcSNP799 58TcSNP899 59TcSNP226 60TcSNP1439
61TcSNP1442 62TcSNP193 63TcSNP25 64TcSNP364 65TcSNP144
66TcSNP230 67TcSNP560 68TcSNP723 69TcSNP731 70TcSNP701
71TcSNP1041 72TcSNP645 73TcSNP917 74Tcm003s01336581 75Tcm003s07402719
76Tcm001s00947643 77Tcm006s26664133 78Tcm002s20575712 79TcSNP529 80TcSNP1458
81TcSNP60 82TcSNP430 83TcSNP823 84TcSNP619 85TcSNP994
86TcSNP1144 87TcSNP1156 88TcSNP469 89TcSNP999 90TcSNP242
91TcSNP1253 92TcSNP1414 93TcSNP154 94TcSNP240