SNP Profiles of PA 121 [PER] View Data

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_Input profile	AA	AC	CT	CC	GG	AG	CC	CC	CC	CC	GG	TT	CC	TT
1._GC-05-011-1-11	AA	AC	CT	CC	GG	AG	CC	CC	CC	CC	GG	TT	CC	TT
2._GC-05-011-1-11	AA	AC	CT	CC	GG	AG	CC	CC	CC	CC	GG	TT	CC	TT
3._RUQ_1059	__	__	CT	CC	__	__	CC	__	CC	__	__	TT	CC	__
4._PA_121_[PER]	AA	AC	CT	CC	__	__	__	__	CC	CC	GG	__	CC	__
5._PA_121_[PER]	AA	AC	CT	CC	__	__	__	__	CC	CC	GG	__	CC	__
6._PA_121_[PER]	AA	AC	CT	CC	__	__	__	__	CC	CC	GG	__	CC	__
7._RUQ_1059	AA	AC	CT	CC	__	__	__	__	CC	CC	GG	__	CC	__
8._PA_121_[PER]	AA	AC	CT	CC	__	__	__	__	CC	CC	GG	__	CC	__
9._PA_121_[PER]	AA	AC	CT	CC	__	__	__	__	CC	CC	GG	__	CC	__
10._PA_121_[PER]	AA	AC	CT	CC	__	__	__	__	CC	CC	GG	__	CC	__
11._RUQ_1059	__	__	__	CC	__	__	CC	__	__	__	__	__	__	__
12._RUQ_1059	__	__	__	CC	__	__	__	__	CC	__	__	__	CC	__
13._PA_121_[PER]	AT	AA	TT	CC	__	__	__	__	CC	CC	AG	__	CC	__
14._GC-05-011-1-11	AT	AA	TT	CC	AG	GG	CC	CC	CC	CC	AG	TT	CC	CC
15._PA_121_[PER]	TT	__	CT	CC	__	__	__	__	CC	TT	AG	__	TT	__
16._GC-05-011-1-11	TT	__	CT	CC	AA	AA	TT	TT	CC	TT	AG	TT	TT	TT
17._RUQ_1059	AA	AC	__	CC	GG	AG	__	GG	GG	__	GG	AA	GG	AA

	15	16	17	18	19	20	21	22	23	24	25	26	27	28
_Input profile	AA	CC	GG	CG	CC	CG	CT	AA	TT	GG	AT	AA	CC	GG
1._GC-05-011-1-11	AA	CC	GG	CG	CC	CG	CT	AA	TT	GG	AT	AA	CC	GG
2._GC-05-011-1-11	AA	CC	GG	CG	CC	CG	CT	AA	TT	GG	AT	AA	CC	GG
3._RUQ_1059	__	__	__	__	CC	__	__	__	__	GG	__	AA	CC	GG
4._PA_121_[PER]	__	__	GG	__	__	CG	__	__	__	__	AT	AA	__	GG
5._PA_121_[PER]	__	__	GG	__	__	CG	__	__	__	__	AT	AA	__	GG
6._PA_121_[PER]	__	__	GG	__	__	CG	__	__	__	__	AT	AA	__	GG
7._RUQ_1059	__	__	GG	__	__	CG	__	__	__	__	AT	AA	__	GG
8._PA_121_[PER]	__	__	GG	__	__	CG	__	__	__	__	AT	AA	__	GG
9._PA_121_[PER]	__	__	GG	__	__	CG	__	__	__	__	AT	AA	__	GG
10._PA_121_[PER]	__	__	GG	__	__	CG	__	__	__	__	AT	AA	__	GG
11._RUQ_1059	__	__	GG	TT	__	__	__	__	__	__	__	__	__	GG
12._RUQ_1059	__	__	__	__	GG	__	CT	__	__	GG	__	AA	CC	CC
13._PA_121_[PER]	__	__	AG	__	__	GG	__	__	__	__	TT	AA	__	GG
14._GC-05-011-1-11	AA	CC	AG	CG	CG	GG	CT	AA	CC	GG	TT	AA	CC	GG
15._PA_121_[PER]	__	__	AG	__	__	GG	__	__	__	__	AA	TT	__	GG
16._GC-05-011-1-11	TT	AA	AG	CG	GG	GG	CC	AA	CC	GG	AA	TT	CC	GG
17._RUQ_1059	TT	CC	GG	CG	__	CG	AG	AA	AA	GG	AT	AA	GG	CC

	29	30	31	32	33	34	35	36	37	38	39	40	41	42
_Input profile	AA	TT	GT	GG	CG	CC	AG	GT	GG	TT	GG	TT	AG	CC
1._GC-05-011-1-11	AA	TT	GT	GG	CG	CC	AG	GT	GG	TT	GG	TT	AG	CC
2._GC-05-011-1-11	AA	TT	GT	GG	CG	CC	AG	GT	GG	TT	GG	TT	AG	CC
3._RUQ_1059	__	__	__	GG	CG	CC	AG	GT	__	__	GG	TT	__	__
4._PA_121_[PER]	AA	__	__	__	CG	__	AG	GT	__	__	GG	__	__	__
5._PA_121_[PER]	AA	__	__	__	CG	__	AG	GT	__	__	GG	__	__	__
6._PA_121_[PER]	AA	__	__	__	CG	__	AG	GT	__	__	GG	__	__	__
7._RUQ_1059	AA	__	__	__	CG	__	AG	GT	__	__	GG	__	__	__
8._PA_121_[PER]	AA	__	__	__	CG	__	AG	GT	__	__	GG	__	__	__
9._PA_121_[PER]	AA	__	__	__	CG	__	AG	GT	__	__	GG	__	__	__
10._PA_121_[PER]	AA	__	__	__	CG	__	AG	GT	__	__	GG	__	__	__
11._RUQ_1059	__	__	__	__	CG	__	AG	__	__	__	__	TT	__	__
12._RUQ_1059	__	__	__	GG	CG	__	__	__	__	TT	__	TT	__	__
13._PA_121_[PER]	AA	__	__	__	CC	__	AG	TT	__	__	AG	__	__	__
14._GC-05-011-1-11	AA	TT	GG	AA	CC	CC	AG	TT	GG	TT	AG	TT	AA	CG
15._PA_121_[PER]	AA	__	__	__	GG	__	AG	GT	__	__	GG	__	__	__
16._GC-05-011-1-11	AA	TT	TT	AG	GG	CC	AG	GT	GG	TT	GG	CT	GG	GG
17._RUQ_1059	AA	AA	AC	GG	CG	CC	AG	AC	CC	AA	GG	AA	AG	GG

	43	44	45	46	47	48	49	50	51	52	53	54	55	56
_Input profile	GG	TT	TT	AA	GG	AA	CC	CC	GG	AA	GG	CT	TT	GG
1._GC-05-011-1-11	GG	TT	TT	AA	GG	AA	CC	CC	GG	AA	GG	CT	TT	GG
2._GC-05-011-1-11	GG	TT	TT	AA	GG	AA	CC	CC	GG	AA	GG	CT	TT	GG
3._RUQ_1059	GG	TT	__	__	GG	__	__	__	__	__	__	__	TT	__
4._PA_121_[PER]	__	__	TT	__	__	__	__	__	__	__	__	CT	__	__
5._PA_121_[PER]	__	__	TT	__	__	__	__	__	__	__	__	CT	__	__
6._PA_121_[PER]	__	__	TT	__	__	__	__	__	__	__	__	CT	__	__
7._RUQ_1059	__	__	TT	__	__	__	__	__	__	__	__	CT	__	__
8._PA_121_[PER]	__	__	TT	__	__	__	__	__	__	__	__	CT	__	__
9._PA_121_[PER]	__	__	TT	__	__	__	__	__	__	__	__	CT	__	__
10._PA_121_[PER]	__	__	TT	__	__	__	__	__	__	__	__	CT	__	__
11._RUQ_1059	__	__	__	__	GG	__	__	__	__	__	__	__	__	GG
12._RUQ_1059	__	TT	__	AA	__	__	__	__	__	__	__	__	__	__
13._PA_121_[PER]	__	__	CT	__	__	__	__	__	__	__	__	CT	__	__
14._GC-05-011-1-11	GG	TT	CT	AA	GG	AA	CC	AC	GG	GG	__	CT	TT	AA
15._PA_121_[PER]	__	__	CC	__	__	__	__	__	__	__	__	CC	__	__
16._GC-05-011-1-11	TT	AT	CC	AA	GG	GG	CT	AC	GG	AG	TT	CC	TT	AG
17._RUQ_1059	CC	__	AA	__	GG	AA	GG	__	GG	AA	CC	AG	AA	GG

	57	58	59	60	61	62	63	64	65	66	67	68	69	70
_Input profile	CC	CT	CT	AA	GG	GG	AC	AA	GG	GG	AG	CC	CC	AA
1._GC-05-011-1-11	CC	CT	CT	AA	GG	GG	AC	AA	GG	GG	AG	CC	CC	AA
2._GC-05-011-1-11	CC	CT	CT	AA	GG	GG	AC	AA	GG	GG	AG	CC	CC	AA
3._RUQ_1059	CC	CT	CT	AA	__	GG	AC	AA	GG	GG	AG	__	__	__
4._PA_121_[PER]	CC	__	CT	AA	GG	__	AC	AA	GG	GG	__	__	__	AA
5._PA_121_[PER]	CC	__	CT	AA	GG	__	AC	AA	GG	GG	__	__	__	AA
6._PA_121_[PER]	CC	__	CT	AA	GG	__	AC	AA	GG	GG	__	__	__	AA
7._RUQ_1059	CC	__	CT	AA	GG	__	AC	AA	GG	GG	__	__	__	AA
8._PA_121_[PER]	CC	__	CT	AA	GG	__	AC	AA	GG	GG	__	__	__	AA
9._PA_121_[PER]	CC	__	CT	AA	GG	__	AC	AA	GG	GG	__	__	__	AA
10._PA_121_[PER]	__	__	CT	AA	GG	__	AC	AA	GG	GG	__	__	__	AA
11._RUQ_1059	__	__	__	__	__	__	AC	AA	__	GG	AG	__	__	AA
12._RUQ_1059	GG	CT	__	AA	__	GG	AC	AA	__	__	__	__	CC	__
13._PA_121_[PER]	CC	__	CT	AA	CG	__	CC	AA	GT	GG	__	__	__	AA
14._GC-05-011-1-11	CC	TT	CT	AA	CG	GG	CC	AA	GT	GG	AG	CT	CC	AA
15._PA_121_[PER]	CC	__	CT	AA	GG	__	CC	AA	GT	GT	__	__	__	AA
16._GC-05-011-1-11	CC	TT	CT	AA	GG	GG	CC	AA	GT	GT	AG	TT	CC	AA
17._RUQ_1059	GG	AG	AG	AA	GG	GG	AC	AA	CC	CC	AG	__	__	__

	71	72	73	74	75	76	77	78	79	80	81	82	83	84
_Input profile	TT	CC	AA	CC	AC	AG	AA	GG	CC	AT	AA	TT	TT	CC
1._GC-05-011-1-11	TT	CC	AA	CC	AC	AG	AA	GG	CC	AT	AA	TT	TT	CC
2._GC-05-011-1-11	TT	CC	AA	CC	AC	AG	AA	GG	CC	AT	AA	TT	TT	CC
3._RUQ_1059	__	__	__	__	__	__	AA	GG	__	__	AA	TT	__	__
4._PA_121_[PER]	TT	__	__	__	__	__	AA	GG	__	__	__	TT	TT	CC
5._PA_121_[PER]	TT	__	__	__	__	__	AA	GG	__	__	__	TT	TT	CC
6._PA_121_[PER]	TT	__	__	__	__	__	AA	GG	__	__	__	TT	TT	CC
7._RUQ_1059	TT	__	__	__	__	__	AA	GG	__	__	__	TT	TT	CC
8._PA_121_[PER]	TT	__	__	__	__	__	AA	GG	__	__	__	TT	TT	CC
9._PA_121_[PER]	TT	__	__	__	__	__	AA	GG	__	__	__	TT	TT	CC
10._PA_121_[PER]	TT	__	__	__	__	__	AA	GG	__	__	__	TT	TT	__
11._RUQ_1059	__	__	__	__	__	__	AA	GG	__	__	AA	__	__	CC
12._RUQ_1059	__	__	__	__	__	__	__	CC	__	__	__	__	TT	__
13._PA_121_[PER]	CT	__	__	__	__	__	CC	CG	__	__	__	TT	TT	CT
14._GC-05-011-1-11	CT	AC	AG	AC	AA	AA	CC	CG	CC	AA	AA	TT	TT	CT
15._PA_121_[PER]	CT	__	__	__	__	__	CC	CG	__	__	__	CC	CT	CC
16._GC-05-011-1-11	CT	CC	AG	CC	CC	AA	CC	CG	CC	AA	CC	CC	CT	CC
17._RUQ_1059	AA	CC	AA	CC	AC	__	AA	CC	GG	AT	AA	AA	AA	__

	85	86	87	88	89	90	91	92
_Input profile	CT	AG	CC	CC	TT	TT	AA	GG	X_X	X_X	X_X	X_X	X_X	X_X
1._GC-05-011-1-11	CT	AG	CC	CC	TT	TT	AA	GG	X_X	X_X	X_X	X_X	X_X	X_X
2._GC-05-011-1-11	CT	AG	CC	CC	TT	TT	AA	GG	X_X	X_X	X_X	X_X	X_X	X_X
3._RUQ_1059	__	AG	CC	CC	TT	__	__	__	X_X	X_X	X_X	X_X	X_X	X_X
4._PA_121_[PER]	__	AG	__	CC	TT	TT	__	__	X_X	X_X	X_X	X_X	X_X	X_X
5._PA_121_[PER]	__	AG	__	CC	TT	TT	__	__	X_X	X_X	X_X	X_X	X_X	X_X
6._PA_121_[PER]	__	AG	__	CC	TT	TT	__	__	X_X	X_X	X_X	X_X	X_X	X_X
7._RUQ_1059	__	AG	__	CC	TT	TT	__	__	X_X	X_X	X_X	X_X	X_X	X_X
8._PA_121_[PER]	__	AG	__	CC	TT	TT	__	__	X_X	X_X	X_X	X_X	X_X	X_X
9._PA_121_[PER]	__	AG	__	CC	TT	TT	__	__	X_X	X_X	X_X	X_X	X_X	X_X
10._PA_121_[PER]	__	AG	__	CC	TT	TT	__	__	X_X	X_X	X_X	X_X	X_X	X_X
11._RUQ_1059	__	__	CC	__	TT	__	__	__	X_X	X_X	X_X	X_X	X_X	X_X
12._RUQ_1059	__	__	__	__	__	__	__	__	X_X	X_X	X_X	X_X	X_X	X_X
13._PA_121_[PER]	__	AG	__	CC	TT	CT	__	__	X_X	X_X	X_X	X_X	X_X	X_X
14._GC-05-011-1-11	TT	AG	TT	CC	TT	CT	AA	GG	X_X	X_X	X_X	X_X	X_X	X_X
15._PA_121_[PER]	__	AA	__	CC	GT	TT	__	__	X_X	X_X	X_X	X_X	X_X	X_X
16._GC-05-011-1-11	TT	AA	CT	CC	GT	TT	AT	GG	X_X	X_X	X_X	X_X	X_X	X_X
17._RUQ_1059	AG	__	__	GG	AA	AA	TT	GG	X_X	X_X	X_X	X_X	X_X	X_X

Input profile: PA_121_[PER] GC-05-011-1-11

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Mars Center for Cocoa Science, Brazil

Location: Tree: 5

Notes: 5 > FP3

1._PA_121_[PER] GC-05-011-1-11

identical
92 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 3

Notes: 3

2._PA_121_[PER] GC-05-011-1-11

identical
92 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 1

Notes: 1 > FP1

3._PA_121_[PER] RUQ_1059

identical
40 shared markers

View View all Clone Any

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Dapeng Zhang, 2014

4._PA_121_[PER]

identical
39 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 5111 3

Dapeng Zhang, 2016

5._PA_121_[PER]

identical
39 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 5111 1 > FP

Dapeng Zhang, 2016

6._PA_121_[PER]

identical
39 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 5111 5 > FP

Dapeng Zhang, 2016

7._PA_121_[PER] RUQ_1059

identical
39 shared markers

View View all Clone Any

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Dapeng Zhang, 2016

8._PA_121_[PER]

identical
39 shared markers

View View all Clone Any

Cocoa Research Institute of Ghana (CRIG), Ghana

Location: P60 102

Dapeng Zhang, 2016

9._PA_121_[PER]

identical
39 shared markers

View View all Clone Any

Malaysian Cocoa Board (MCB), Malaysia

Location: C0233

Dapeng Zhang, 2016

10._PA_121_[PER]

identical
37 shared markers

View View all Clone Any

International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago

Location: Marper D393

Dapeng Zhang, 2016

11._PA_121_[PER] RUQ_1059

95.2 %
21 shared markers

View View all Clone Any

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Lambert Motilal, 2023

12._PA_121_[PER] RUQ_1059

83.3 %
24 shared markers

View View all Clone Any

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Location: GBR207

Jocelyn De Wever et al., 2019

13._PA_121_[PER]

74.4 %
39 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 5111 4

Dapeng Zhang, 2016

Population Assignment:

Dapeng Zhang, 2016

14._PA_121_[PER] GC-05-011-1-11

73.6 %
91 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 4

Notes: 4

15._PA_121_[PER]

63.2 %
38 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 5111 2 > FP

Dapeng Zhang, 2016

Population Assignment:

Dapeng Zhang, 2016

16._PA_121_[PER] GC-05-011-1-11

59.9 %
91 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 2

Notes: 2 > FP4

17._PA_121_[PER] RUQ_1059

51.3 %
78 shared markers

View View all Clone Any

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Notes: Reading_Collection

Key to SNP Markers

Key to SNP Markers

1	TcSNP1075	2	TcSNP1350	3	TcSNP534	4	TcSNP591	5	TcSNP42
6	TcSNP418	7	TcSNP702	8	TcSNP1096	9	TcSNP1060	10	TcSNP1165
11	TcSNP429	12	TcSNP75	13	TcSNP891	14	TcSNP122	15	TcSNP316
16	TcSNP521	17	TcSNP1062	18	TcSNP836	19	TcSNP878	20	TcSNP929
21	TcSNP413	22	TcSNP653	23	TcSNP1149	24	TcSNP174	25	TcSNP32
26	TcSNP372	27	TcSNP448	28	TcSNP872	29	TcSNP953	30	TcSNP1034
31	TcSNP1175	32	TcSNP1111	33	TcSNP577	34	TcSNP90	35	TcSNP998
36	TcSNP150	37	TcSNP28	38	TcSNP751	39	TcSNP1484	40	TcSNP602
41	TcSNP561	42	TcSNP894	43	TcSNP1063	44	TcSNP1126	45	TcSNP1270
46	TcSNP606	47	TcSNP329	48	TcSNP689	49	TcSNP944	50	TcSNP1242
51	TcSNP1383	52	TcSNP547	53	TcSNP776	54	TcSNP1520	55	TcSNP799
56	TcSNP899	57	TcSNP226	58	TcSNP1439	59	TcSNP1442	60	TcSNP193
61	TcSNP25	62	TcSNP364	63	TcSNP144	64	TcSNP230	65	TcSNP560
66	TcSNP723	67	TcSNP731	68	TcSNP701	69	TcSNP1041	70	TcSNP645
71	TcSNP917	72	Tcm003s01336581	73	Tcm003s07402719	74	Tcm001s00947643	75	Tcm006s26664133
76	Tcm002s20575712	77	TcSNP529	78	TcSNP1458	79	TcSNP60	80	TcSNP430
81	TcSNP823	82	TcSNP619	83	TcSNP994	84	TcSNP1144	85	TcSNP1156
86	TcSNP469	87	TcSNP999	88	TcSNP242	89	TcSNP1253	90	TcSNP1414
91	TcSNP154	92	TcSNP240