SNP Profiles of PA-121   View Data

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 Key

 1234567891011121314
_Input profile
TTCTCCAAAATTTTCCTTAGTTTTTTTT
1._PA_121_[PER]
TTCTCC________CCTTAG__TT____
2._PA_121_[PER]
ATTTCC________CCCCAG__CC____
3._GC-05-011-1-11
ATTTCCAGGGCCCCCCCCAGTTCCCCAA
4._PA_121_[PER]
AACTCC________CCCCGG__CC____
5._RUQ_1059
__CTCC____CC__CC____TTCC____
6._PA_121_[PER]
AACTCC________CCCCGG__CC____
7._PA_121_[PER]
AACTCC________CCCCGG__CC____
8._RUQ_1059
AACTCC________CCCCGG__CC____
9._PA_121_[PER]
AACTCC________CCCCGG__CC____
10._PA_121_[PER]
AACTCC________CCCCGG__CC____
11._RUQ_1059
____CC________CC______CC____
12._PA_121_[PER]
AACTCC________CCCCGG__CC____
13._GC-05-011-1-11
AACTCCGGAGCCCCCCCCGGTTCCTTAA
14._GC-05-011-1-11
AACTCCGGAGCCCCCCCCGGTTCCTTAA
15._GC-05-011-1-11
AACTCCGGAGCCCCCCCCGGTTCCTTAA
16._RUQ_1059
____CC____CC________________
17._RUQ_1059
AA__CCGGAG__GGGG__GGAAGGAATT
 1516171819202122232425262728
_Input profile
AAAAAGCGGGGGCCAACCGGAATTCCGG
1._PA_121_[PER]
____AG____GG________AATT__GG
2._PA_121_[PER]
____AG____GG________TTAA__GG
3._GC-05-011-1-11
CCAAAGCGCGGGCTAACCGGTTAACCGG
4._PA_121_[PER]
____GG____CG________ATAA__GG
5._RUQ_1059
________CC________GG__AACCGG
6._PA_121_[PER]
____GG____CG________ATAA__GG
7._PA_121_[PER]
____GG____CG________ATAA__GG
8._RUQ_1059
____GG____CG________ATAA__GG
9._PA_121_[PER]
____GG____CG________ATAA__GG
10._PA_121_[PER]
____GG____CG________ATAA__GG
11._RUQ_1059
__GG____GG__CT____GG__AACCCC
12._PA_121_[PER]
____GG____CG________ATAA__GG
13._GC-05-011-1-11
CC__GGCGCCCGCTAATTGGATAACCGG
14._GC-05-011-1-11
CC__GGCGCCCGCTAATTGGATAACCGG
15._GC-05-011-1-11
CC__GGCGCCCGCTAATTGGATAACCGG
16._RUQ_1059
____GGTT__________________GG
17._RUQ_1059
CCGGGGCG__CGAGAAAAGGATAAGGCC
 2930313233343536373839404142
_Input profile
AATTTTAGGGCCAGGTGGTTGGCTGGGG
1._PA_121_[PER]
AA______GG__AGGT____GG______
2._PA_121_[PER]
AA______CC__AGTT____AG______
3._GC-05-011-1-11
AATTGGAACCCCAGTTGGTTAGTTAACG
4._PA_121_[PER]
AA______CG__AGGT____GG______
5._RUQ_1059
______GGCGCCAGGT____GGTT____
6._PA_121_[PER]
AA______CG__AGGT____GG______
7._PA_121_[PER]
AA______CG__AGGT____GG______
8._RUQ_1059
AA______CG__AGGT____GG______
9._PA_121_[PER]
AA______CG__AGGT____GG______
10._PA_121_[PER]
AA______CG__AGGT____GG______
11._RUQ_1059
______GGCG________TT__TT____
12._PA_121_[PER]
AA______CG__AGGT____GG______
13._GC-05-011-1-11
AATTGTGGCGCCAGGTGGTTGGTTAGCC
14._GC-05-011-1-11
AATTGTGGCGCCAGGTGGTTGGTTAGCC
15._GC-05-011-1-11
AATTGTGGCGCCAGGTGGTTGGTTAGCC
16._RUQ_1059
________CG__AG________TT____
17._RUQ_1059
AAAAACGGCGCCAGACCCAAGGAAAGGG
 4344454647484950515253545556
_Input profile
TTATCCAAGGGGCTACGGAGTTTTCTCC
1._PA_121_[PER]
____CC__________________CTCC
2._PA_121_[PER]
____CT__________________TTCT
3._GC-05-011-1-11
GGTTCTAAGGAACCACGGGG__TTTTCT
4._PA_121_[PER]
____TT____________________CT
5._RUQ_1059
GGTT____GG____________CCCC__
6._PA_121_[PER]
____TT__________________CCCT
7._PA_121_[PER]
____TT__________________CCCT
8._RUQ_1059
____TT__________________CCCT
9._PA_121_[PER]
____TT__________________CCCT
10._PA_121_[PER]
____TT__________________CCCT
11._RUQ_1059
__TT__AA________________CC__
12._PA_121_[PER]
____TT__________________CCCT
13._GC-05-011-1-11
GGTTTTAAGGAACCCCGGAAGG____CT
14._GC-05-011-1-11
GGTTTTAAGGAACCCCGGAAGG__CCCT
15._GC-05-011-1-11
GGTTTTAAGGAACCCCGGAAGG__CCCT
16._RUQ_1059
________GG__________________
17._RUQ_1059
CC__AA__GGAAGG__GGAACCGGGGAG
 5758596061626364656667686970
_Input profile
TTAGCCTTCTAAGGGGCCAAGTGTAGTT
1._PA_121_[PER]
____CC__CTAAGG__CCAAGTGT____
2._PA_121_[PER]
____CC__CTAACG__CCAAGTGG____
3._GC-05-011-1-11
TTAACCTTCTAACGGGCCAAGTGGAGCT
4._PA_121_[PER]
____CC__CTAAGG__ACAAGGGG____
5._RUQ_1059
TT__CCCTCTAA__GGACAAGGGGAG__
6._PA_121_[PER]
____CC__CTAAGG__ACAAGGGG____
7._PA_121_[PER]
____CC__CTAAGG__ACAAGGGG____
8._RUQ_1059
____CC__CTAAGG__ACAAGGGG____
9._PA_121_[PER]
____CC__CTAAGG__ACAAGGGG____
10._PA_121_[PER]
____CC__CTAAGG__ACAAGGGG____
11._RUQ_1059
____GGCT__AA__GGACAA________
12._PA_121_[PER]
________CTAAGG__ACAAGGGG____
13._GC-05-011-1-11
TTGGCCCTCTAAGGGGACAAGGGGAGCC
14._GC-05-011-1-11
TTGGCCCTCTAAGGGGACAAGGGGAGCC
15._GC-05-011-1-11
TTGGCCCTCTAAGGGGACAAGGGGAGCC
16._RUQ_1059
__GG____________ACAA__GGAG__
17._RUQ_1059
AAGGGGAGAGAAGGGGACAACCCCAG__
 7172737475767778798081828384
_Input profile
CCAACTCCAGCCCCAACCCGCCAACCCC
1._PA_121_[PER]
__AACT__________CCCG______CC
2._PA_121_[PER]
__AACT__________CCCG______TT
3._GC-05-011-1-11
CCAACTACAGACAAAACCCGCCAAAATT
4._PA_121_[PER]
__AATT__________AAGG______TT
5._RUQ_1059
________________AAGG____AATT
6._PA_121_[PER]
__AATT__________AAGG______TT
7._PA_121_[PER]
__AATT__________AAGG______TT
8._RUQ_1059
__AATT__________AAGG______TT
9._PA_121_[PER]
__AATT__________AAGG______TT
10._PA_121_[PER]
__AATT__________AAGG______TT
11._RUQ_1059
CC________________CC________
12._PA_121_[PER]
__AATT__________AAGG______TT
13._GC-05-011-1-11
CCAATTCCAACCACAGAAGGCCATAATT
14._GC-05-011-1-11
CCAATTCCAACCACAGAAGGCCATAATT
15._GC-05-011-1-11
CCAATTCCAACCACAGAAGGCCATAATT
16._RUQ_1059
__AA____________AAGG____AA__
17._RUQ_1059
____AACCAACCAC__AACCGGATAAAA
 85868788899091929394    
_Input profile
CTCCTTAACTCCGTTTATGGX_XX_XX_XX_X
1._PA_121_[PER]
CTCC__AA__CCGTTT____X_XX_XX_XX_X
2._PA_121_[PER]
TTCT__AG__CCTTCT____X_XX_XX_XX_X
3._GC-05-011-1-11
TTCTTTAGTTCCTTCTAAGGX_XX_XX_XX_X
4._PA_121_[PER]
TTCC__AG__CCTTTT____X_XX_XX_XX_X
5._RUQ_1059
______AGCCCCTT______X_XX_XX_XX_X
6._PA_121_[PER]
TTCC__AG__CCTTTT____X_XX_XX_XX_X
7._PA_121_[PER]
TTCC__AG__CCTTTT____X_XX_XX_XX_X
8._RUQ_1059
TTCC__AG__CCTTTT____X_XX_XX_XX_X
9._PA_121_[PER]
TTCC__AG__CCTTTT____X_XX_XX_XX_X
10._PA_121_[PER]
TTCC__AG__CCTTTT____X_XX_XX_XX_X
11._RUQ_1059
TT__________________X_XX_XX_XX_X
12._PA_121_[PER]
TT____AG__CCTTTT____X_XX_XX_XX_X
13._GC-05-011-1-11
TTCCCTAGCCCCTTTTAAGGX_XX_XX_XX_X
14._GC-05-011-1-11
TTCCCTAGCCCCTTTTAAGGX_XX_XX_XX_X
15._GC-05-011-1-11
TTCCCTAGCCCCTTTTAAGGX_XX_XX_XX_X
16._RUQ_1059
__CC____CC__TT______X_XX_XX_XX_X
17._RUQ_1059
AA__AG____GGAAAATTGGX_XX_XX_XX_X

Input profile: PA_121_[PER] GC-05-011-1-11

 
Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2 > FP4
 Mars, 2018

1._PA_121_[PER]

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 5111 2 > FP
 Dapeng Zhang, 2016
Population Assignment: 
 Dapeng Zhang, 2016

2._PA_121_[PER]

66.7 %
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 5111 4
 Dapeng Zhang, 2016
Population Assignment: 
 Dapeng Zhang, 2016

3._PA_121_[PER] GC-05-011-1-11

65.1 %
93 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: 4
 Mars, 2018

4._PA_121_[PER]

63.2 %
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: 5111 5 > FP
 Dapeng Zhang, 2016

5._PA_121_[PER] RUQ_1059

63.1 %
42 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

6._PA_121_[PER]

62.8 %
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 5111 3
 Dapeng Zhang, 2016

7._PA_121_[PER]

62.8 %
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 5111 1 > FP
 Dapeng Zhang, 2016

8._PA_121_[PER] RUQ_1059

62.8 %
39 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2016

9._PA_121_[PER]

62.8 %
39 shared markers

Cocoa Research Institute of Ghana (CRIG), Ghana
Location: P60 102
 Dapeng Zhang, 2016

10._PA_121_[PER]

62.8 %
39 shared markers

Malaysian Cocoa Board (MCB), Malaysia
Location: C0233
 Dapeng Zhang, 2016

11._PA_121_[PER] RUQ_1059

61.5 %
26 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
Location: GBR207
 Jocelyn De Wever et al., 2019

12._PA_121_[PER]

60.8 %
37 shared markers

International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: Marper D393
 Dapeng Zhang, 2016

13._PA_121_[PER] GC-05-011-1-11

59.9 %
91 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 5
Notes: 5 > FP3
 Mars, 2018

14._PA_121_[PER] GC-05-011-1-11

59.8 %
92 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3
 Mars, 2018

15._PA_121_[PER] GC-05-011-1-11

59.8 %
92 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1 > FP1
 Mars, 2018

16._PA_121_[PER] RUQ_1059

59.5 %
21 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Lambert Motilal, 2023

17._PA_121_[PER] RUQ_1059

35 %
80 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
Notes: Reading_Collection
 Mars, 2018

 


  Key to SNP Markers

1TcSNP1075 2TcSNP534 3TcSNP591 4TcSNP42 5TcSNP418
6TcSNP702 7TcSNP1096 8TcSNP1060 9TcSNP1165 10TcSNP429
11TcSNP75 12TcSNP891 13TcSNP122 14TcSNP316 15TcSNP521
16TcSNP860 17TcSNP1062 18TcSNP836 19TcSNP878 20TcSNP929
21TcSNP413 22TcSNP653 23TcSNP1149 24TcSNP174 25TcSNP32
26TcSNP372 27TcSNP448 28TcSNP872 29TcSNP953 30TcSNP1034
31TcSNP1175 32TcSNP1111 33TcSNP577 34TcSNP90 35TcSNP998
36TcSNP150 37TcSNP28 38TcSNP751 39TcSNP1484 40TcSNP602
41TcSNP561 42TcSNP894 43TcSNP1063 44TcSNP1126 45TcSNP1270
46TcSNP606 47TcSNP329 48TcSNP689 49TcSNP944 50TcSNP1242
51TcSNP1383 52TcSNP547 53TcSNP776 54TcSNP1309 55TcSNP151
56TcSNP1520 57TcSNP799 58TcSNP899 59TcSNP226 60TcSNP1439
61TcSNP1442 62TcSNP193 63TcSNP25 64TcSNP364 65TcSNP144
66TcSNP230 67TcSNP560 68TcSNP723 69TcSNP731 70TcSNP701
71TcSNP1041 72TcSNP645 73TcSNP917 74Tcm003s01336581 75Tcm003s07402719
76Tcm001s00947643 77Tcm006s26664133 78Tcm002s20575712 79TcSNP529 80TcSNP1458
81TcSNP60 82TcSNP430 83TcSNP823 84TcSNP619 85TcSNP994
86TcSNP1144 87TcSNP1156 88TcSNP469 89TcSNP999 90TcSNP242
91TcSNP1253 92TcSNP1414 93TcSNP154 94TcSNP240