SNP Profiles of ICS 1   View Data

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 Key

 1 2 3 4 5 6 7 8 9 10 11 12 13 14
_Input profile
AAAATTACGGAGCCCCTTCTGGCTCCCC
1._PA_70_[PER]___
AAAATTAC________TTCTGG__CC__
2._PA_70_[PER]___
AAACTTAC________CCCCGG__CC__
3._PA_70_[PER]___
AAACTTAC________CCCCGG__CC__
4._PA_70_[PER]___
AAACTTAC________CCCCGG__CC__
5._PA_70_[PER]___
______AC____CC______________
6._PA_70_[PER]___
AAACTTACGGAGCCCCCCCCGGTTCCTT
7._PA_70_[PER]___
____TTAC____CC__CC____TTCC__
8._PA_70_[PER]___
______AC________CC______CC__
9._PA_70_[PER]___
AAAC__ACGGAG__GGGG__GGAAGGAA
10._PA_70_[PER]___
AAAC__ACGGAG__GGGG__GGAAGGAA
11._PA_70_[PER]___
AAAC__ACGGAG__GGGG__GGAAGGAA
12._PA_70_[PER]___
AAAC__ACGGAG__GGGG__GGAAGGAA
13._PA_70_[PER]___
AACC__CCGGAA__GGGG__GGAAGGAA
 15 16 17 18 19 20 21 22 23 24 25 26 27 28
_Input profile
ATCCAAAAGGCGGGCTAGTTAGATATCG
1._PA_70_[PER]___
______AA____GG________ATAT__
2._PA_70_[PER]___
______AG____CG________ATAA__
3._PA_70_[PER]___
______AG____CG________ATAA__
4._PA_70_[PER]___
______AG____CG________ATAA__
5._PA_70_[PER]___
______AGTT__________________
6._PA_70_[PER]___
AACC__AGCCCCCGTTAATTGGATAACC
7._PA_70_[PER]___
__________CC________GG__AACC
8._PA_70_[PER]___
____GG____GG__TT____GG__AACC
9._PA_70_[PER]___
TTCCGGAGGG__CGAAAGAAGGATAAGG
10._PA_70_[PER]___
TTCCGGAGGG__CGAAAGAAGGATAAGG
11._PA_70_[PER]___
TTCCGGAGGG__CGAAAGAAGGATAAGG
12._PA_70_[PER]___
TTCCGGAGGG__CGAAAGAAGGATAAGG
13._PA_70_[PER]___
TTCCGGGGCC__CCAGAGAAGGATAAGG
 29 30 31 32 33 34 35 36 37 38 39 40 41 42
_Input profile
CGAACTGGAACCAAAGGTGGGTAACTAA
1._PA_70_[PER]___
CGAA______CC__AGGT____AA____
2._PA_70_[PER]___
GGAA______CG__AGGG____AG____
3._PA_70_[PER]___
GGAA______CG__AGGG____AG____
4._PA_70_[PER]___
GGAA______CG__AGGG____AG____
5._PA_70_[PER]___
GG________CG__AG________CT__
6._PA_70_[PER]___
GGAATTGTGGCGCCAGGGGGTTAGCTAG
7._PA_70_[PER]___
GG______GGCGCCAGGG____AGCT__
8._PA_70_[PER]___
CC______GGCG________TT__CT__
9._PA_70_[PER]___
CCAAAAACGGCGCCAGCCCCAAAGAGAG
10._PA_70_[PER]___
CCAAAAACGGCGCCAGCCCCAAAGAGAG
11._PA_70_[PER]___
CCAAAAACGGCGCCAGCCCCAAAGAGAG
12._PA_70_[PER]___
CCAAAAACGGCGCCAGCCCCAAAGAGAG
13._PA_70_[PER]___
CCAAAAACGGGGCCAGCCCCACAGGGAG
 43 44 45 46 47 48 49 50 51 52 53 54 55 56
_Input profile
CCGTAACCGGAGAGTTCCGGGGGTTTCC
1._PA_70_[PER]___
______CC__________________CC
2._PA_70_[PER]___
______CC__________________CC
3._PA_70_[PER]___
______CC__________________CC
4._PA_70_[PER]___
______CC__________________CC
5._PA_70_[PER]___
__________GG________________
6._PA_70_[PER]___
CCGGTTCCAAGGAACCCCGGAGGGTTCC
7._PA_70_[PER]___
__GGTT____GG____________CTCC
8._PA_70_[PER]___
____TT__AA________________CC
9._PA_70_[PER]___
GGCC__GG__GGAAGG__GGAGCCAGGG
10._PA_70_[PER]___
GGCC__GG__GGAAGG__GGAGCCAGGG
11._PA_70_[PER]___
GGCC__GG__GGAAGG__GGAGCCAGGG
12._PA_70_[PER]___
GGCC__GG__GGAAGG__GGAGCCAGGG
13._PA_70_[PER]___
GGCC__AG__GGAAGG__GGAACCAGAG
 57 58 59 60 61 62 63 64 65 66 67 68 69 70
_Input profile
TTGTAACGTTCTAAGGAAAAAGTTGTGG
1._PA_70_[PER]___
TT____CG__CTAAGG__AAAGTTGT__
2._PA_70_[PER]___
CC________CTAAGG__AAAGGGGG__
3._PA_70_[PER]___
CC____CC__CTAAGG__AAAGGGGG__
4._PA_70_[PER]___
CC____CC__CTAAGG__AAAGGGGG__
5._PA_70_[PER]___
____GG____________AAAG__GGGG
6._PA_70_[PER]___
CCTTGGCCCCCTAAGGGGAAAGGGGGGG
7._PA_70_[PER]___
__TTGGCCCCCTAA__GGAAAGGGGGGG
8._PA_70_[PER]___
______GGCC__AA__GGAAAG______
9._PA_70_[PER]___
GGAAGGGGGGAGAAGGGGAAAGCCCCGG
10._PA_70_[PER]___
GGAAGGGGGGAGAAGGGGAAAGCCCCGG
11._PA_70_[PER]___
GGAAGGGGGGAGAAGGGGAAAGCCCCGG
12._PA_70_[PER]___
GGAAGGGGGGAGAAGGGGAAAGCCCCGG
13._PA_70_[PER]___
AGAAGGGGGGAGACGGGGAAAG__CCAG
 71 72 73 74 75 76 77 78 79 80 81 82 83 84
_Input profile
CTCCGGTTACGGCCAAAACCGGCTAAAC
1._PA_70_[PER]___
____GGTT__________CCGG______
2._PA_70_[PER]___
____AACT__________AAGG______
3._PA_70_[PER]___
____AGCT__________AAGG______
4._PA_70_[PER]___
____AACT__________AAGG______
5._PA_70_[PER]___
____AA____________AAGG____AA
6._PA_70_[PER]___
CCCCAGCTCCAGAAACAGAAGGCCAAAA
7._PA_70_[PER]___
__________________AAGG____AA
8._PA_70_[PER]___
__CC________________CC______
9._PA_70_[PER]___
______AGCCAGAAAC__AACCGGAAAA
10._PA_70_[PER]___
______AGCCAGAAAC__AACCGGAAAA
11._PA_70_[PER]___
______AGCCAGAAAC__AACCGGAAAA
12._PA_70_[PER]___
______AGCCAGAAAC__AACCGGAAAA
13._PA_70_[PER]___
______GGACAGACAC__AACGGGAAAA
 85 86 87 88 89 90 91 92 93 94 95    
_Input profile
TTTTTTTTAGCTCTTTTTAAGGX_XX_XX_X
1._PA_70_[PER]___
TTTTTT__AG__CTTTTT____X_XX_XX_X
2._PA_70_[PER]___
TTCC____AA__CCTTTT____X_XX_XX_X
3._PA_70_[PER]___
TTCCCC__AA__CCTTTT____X_XX_XX_X
4._PA_70_[PER]___
TTCCCC__AA__CCTTTT____X_XX_XX_X
5._PA_70_[PER]___
____CC____CT__TT______X_XX_XX_X
6._PA_70_[PER]___
TTCCCCCTAACTCCTTTTATGGX_XX_XX_X
7._PA_70_[PER]___
TT______AACCCCTT______X_XX_XX_X
8._PA_70_[PER]___
__CC__________________X_XX_XX_X
9._PA_70_[PER]___
AAGG__AG____GGAAAAATGGX_XX_XX_X
10._PA_70_[PER]___
AAGG__AG____GGAAAAATGGX_XX_XX_X
11._PA_70_[PER]___
AAGG__AG____GGAAAAATGGX_XX_XX_X
12._PA_70_[PER]___
AAGG__AG____GGAAAAATGGX_XX_XX_X
13._PA_70_[PER]___
AAGG__AG____GGAAAATTGGX_XX_XX_X

Input profile: PA_70_[PER] GC-04-053-3-17

 
Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2 > FP1 (roxo)
 Mars, 2018

1._PA_70_[PER]

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 4317 2 > FP
 Dapeng Zhang, 2016

2._PA_70_[PER]

67.1 %
38 shared markers

International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: MARPER D634
 Dapeng Zhang, 2016

3._PA_70_[PER]

66.3 %
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 4317 6 > FP
 Dapeng Zhang, 2016

4._PA_70_[PER] RUQ_33

65 %
40 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2016

5._PA_70_[PER] RUQ_33

61.9 %
21 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Lambert Motilal, 2023
Population Assignment: 

6._PA_70_[PER] GC-04-053-3-17

60.1 %
94 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 6
Notes: 6 > FP2 (verde)
 Mars, 2018

7._PA_70_[PER] RUQ_33

57 %
43 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

8._PA_70_[PER] PA70[PER]

48.1 %
26 shared markers

Center for Forestry Research and Technology Transfer, Vietnam
Location: CEFORTT
 Jocelyn De Wever et al., 2019

9._PA_70_[PER] GC-04-53-3-17

35.8 %
81 shared markers

Mars Center for Cocoa Science, Brazil
Location: Field: 4, Block: 3, Rep: 17, Tree: 6 > FP2 (verde)
Notes: MCCS_Structure_refs_above_0.9membership
 Mars, 2018

10._PA_70_[PER] RUQ_33

35.8 %
81 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
Notes: Reading_Collection
 Mars, 2018

11._PA_70_[PER] MITC-000025

35.8 %
81 shared markers

USDA-SHRS, United States of America
 Mars, 2018

12._PA_70_[PER] MITC-000026

35.8 %
81 shared markers

USDA-SHRS, United States of America
 Mars, 2018

13._PA_70_[PER] PA_70_[PER]_Fld#_185_Plt#_1

30.6 %
80 shared markers

USDA-TARS, United States of America
Location: Field: 185, Tree: 1
 Mars, 2018

 


  Key to SNP Markers

1TcSNP1075 2TcSNP1350 3TcSNP534 4TcSNP591 5TcSNP42
6TcSNP418 7TcSNP702 8TcSNP1096 9TcSNP1060 10TcSNP1165
11TcSNP429 12TcSNP75 13TcSNP891 14TcSNP122 15TcSNP316
16TcSNP521 17TcSNP860 18TcSNP1062 19TcSNP836 20TcSNP878
21TcSNP929 22TcSNP413 23TcSNP653 24TcSNP1149 25TcSNP174
26TcSNP32 27TcSNP372 28TcSNP448 29TcSNP872 30TcSNP953
31TcSNP1034 32TcSNP1175 33TcSNP1111 34TcSNP577 35TcSNP90
36TcSNP998 37TcSNP150 38TcSNP28 39TcSNP751 40TcSNP1484
41TcSNP602 42TcSNP561 43TcSNP894 44TcSNP1063 45TcSNP1126
46TcSNP1270 47TcSNP606 48TcSNP329 49TcSNP689 50TcSNP944
51TcSNP1242 52TcSNP1383 53TcSNP547 54TcSNP776 55TcSNP1309
56TcSNP151 57TcSNP1520 58TcSNP799 59TcSNP899 60TcSNP226
61TcSNP1439 62TcSNP1442 63TcSNP193 64TcSNP25 65TcSNP364
66TcSNP144 67TcSNP230 68TcSNP560 69TcSNP723 70TcSNP731
71TcSNP701 72TcSNP1041 73TcSNP645 74TcSNP917 75Tcm003s01336581
76Tcm003s07402719 77Tcm001s00947643 78Tcm006s26664133 79Tcm002s20575712 80TcSNP529
81TcSNP1458 82TcSNP60 83TcSNP430 84TcSNP823 85TcSNP619
86TcSNP994 87TcSNP1144 88TcSNP1156 89TcSNP469 90TcSNP999
91TcSNP242 92TcSNP1253 93TcSNP1414 94TcSNP154 95TcSNP240