SNP Profiles of PA7 [PER]   View Data

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 Key

 1 2 3 4 5 6 7 8 9 10 11 12 13 14
_Input profile
AACCCCCCGGAACCCCCCCCGGTTCCTT
1._PA_7_[PER]___
AACCCCCCGGAACCCCCCCCGGTTCCTT
2._PA_7_[PER]___
AACCCCCCGGAACCCCCCCCGGTTCCTT
3._PA_7_[PER]___
AACCCCCCGGAACCCCCCCCGGTTCCTT
4._PA_7_[PER]___
AACCCCCCGGAACCCCCCCCGGTTCCTT
5._PA_7_[PER]___
AACCCCCC________CCCCGG__CC__
6._PA_7_[PER]___
AACCCCCC________CCCCGG__CC__
7._PA_7_[PER]___
AACCCCCC________CCCCGG__CC__
8._PA_7_[PER]___
AACCCCCC________CCCCGG__CC__
9._PA_7_[PER]___
AACCCCCC________CCCCGG__CC__
10._PA_7_[PER]___
AACCCCCC________CCCCGG__CC__
11._PA_7_[PER]___
AACCCCCC________CCCCGG__CC__
12._PA_7_[PER]___
AACCCCCC________CCCCGG__CC__
13._PA_7_[PER]___
____CCCC____CC__CC____TTCC__
14._PA_7_[PER]___
AACCCCCC________CCCCGG__CC__
15._PA_7_[PER]___
______CC____CC______________
16._PA_7_[PER]___
AACC__CCGGAA__GGGG__GGAAGGAA
 15 16 17 18 19 20 21 22 23 24 25 26 27 28
_Input profile
AACCGGGGCCCCCTAATTGGATAACCGG
1._PA_7_[PER]___
AACCGGGGCCCCCTAATTGGATAACCGG
2._PA_7_[PER]___
AACCGGGGCCCCCTAATTGGATAACCGG
3._PA_7_[PER]___
AACCGGGGCCCCCTAATTGGATAACCGG
4._PA_7_[PER]___
AACCGGGGCCCCCTAATTGGATAACCGG
5._PA_7_[PER]___
____GG____CC________ATAA__GG
6._PA_7_[PER]___
____GG____CC________ATAA__GG
7._PA_7_[PER]___
____GG____CC________ATAA__GG
8._PA_7_[PER]___
____GG____CC________ATAA__GG
9._PA_7_[PER]___
____GG____CC________ATAA__GG
10._PA_7_[PER]___
____GG____CC________ATAA__GG
11._PA_7_[PER]___
____GG____CC________ATAA__GG
12._PA_7_[PER]___
____GG____CC________ATAA__GG
13._PA_7_[PER]___
________CC________GG__AACCGG
14._PA_7_[PER]___
____GG____CC________ATAA__GG
15._PA_7_[PER]___
____GGTT__________________GG
16._PA_7_[PER]___
TTCCGGCC__CCAGAGAAGGATAAGGCC
 29 30 31 32 33 34 35 36 37 38 39 40 41 42
_Input profile
AATTGTGGGGCCAGGGGGGTAGCCAGCC
1._PA_7_[PER]___
AATTGTGGGGCCAGGGGGGTAGCCAGCC
2._PA_7_[PER]___
AATTGTGGGGCCAGGGGGGTAGCCAGCC
3._PA_7_[PER]___
AATTGTGGGGCCAGGGGGGTAGCCAGCC
4._PA_7_[PER]___
AATTGTGGGGCCAGGGGGGTAGCCAGCC
5._PA_7_[PER]___
AA______GG__AGGG____AG______
6._PA_7_[PER]___
AA______GG__AGGG____AG______
7._PA_7_[PER]___
AA______GG__AGGG____AG______
8._PA_7_[PER]___
AA______GG__AGGG____AG______
9._PA_7_[PER]___
AA______GG__AGGG____AG______
10._PA_7_[PER]___
AA______GG__AGGG____AG______
11._PA_7_[PER]___
AA______GG__AGGG____AG______
12._PA_7_[PER]___
AA______GG__AGGG____AG______
13._PA_7_[PER]___
______GGGGCCAGGG____AGCC____
14._PA_7_[PER]___
AA______GG__AGGG____AG______
15._PA_7_[PER]___
________GG__AG________CC____
16._PA_7_[PER]___
AAAAACGGGGCCAGCCCCACAGGGAGGG
 43 44 45 46 47 48 49 50 51 52 53 54 55 56
_Input profile
GGTTCTAAGGAACCCCGGAAGGTTCTCT
1._PA_7_[PER]___
GGTTCTAAGGAACCCCGGAAGGTTCTCT
2._PA_7_[PER]___
GGTTCTAAGGAACCCCGGAAGGTTCTCT
3._PA_7_[PER]___
GGTTCTAAGGAACCCCGGAAGGTTCTCT
4._PA_7_[PER]___
GGTTCTAAGGAACCCCGGAAGGTTCTCT
5._PA_7_[PER]___
____CT__________________CTCT
6._PA_7_[PER]___
____CT__________________CTCT
7._PA_7_[PER]___
____CT__________________CTCT
8._PA_7_[PER]___
____CT__________________CTCT
9._PA_7_[PER]___
____CT__________________CTCT
10._PA_7_[PER]___
____CT__________________CTCT
11._PA_7_[PER]___
____CT__________________CTCT
12._PA_7_[PER]___
____CT__________________CTCT
13._PA_7_[PER]___
GGTT____GG____________CTCT__
14._PA_7_[PER]___
____CT__________________CTCT
15._PA_7_[PER]___
________GG__________________
16._PA_7_[PER]___
CC__AG__GGAAGG__GGAACCAGAGAG
 57 58 59 60 61 62 63 64 65 66 67 68 69 70
_Input profile
TTGGCCCCCTAAGGGGAAAGGTGGAGCC
1._PA_7_[PER]___
TTGGCCCCCTAAGGGGAAAGGTGGAGCC
2._PA_7_[PER]___
TTGGCCCCCTAAGGGGAAAGGTGGAGCC
3._PA_7_[PER]___
TTGGCCCCCTAAGGGGAAAGGTGGAGCC
4._PA_7_[PER]___
TTGGCCCCCTAAGGGGAAAGGTGGAGCC
5._PA_7_[PER]___
____CC__CTAAGG__AAAGGTGG____
6._PA_7_[PER]___
____CC__CTAAGG__AAAGGTGG____
7._PA_7_[PER]___
____CC__CTAAGG__AAAGGTGG____
8._PA_7_[PER]___
____CC__CTAAGG__AAAGGTGG____
9._PA_7_[PER]___
____CC__CTAAGG__AAAGGTGG____
10._PA_7_[PER]___
____CC__CTACGG__AAAGGTGG____
11._PA_7_[PER]___
____CC__CTACGG__AAAGGTGG____
12._PA_7_[PER]___
____CC__CTACGG__AAAGGTGG____
13._PA_7_[PER]___
TTGGCCCCCTAC__GGAAAGGTGGAG__
14._PA_7_[PER]___
____CC__CTACGG__AAAGGTGG____
15._PA_7_[PER]___
__GG____________AAAG__GGAG__
16._PA_7_[PER]___
AAGGGGGGAGACGGGGAAAGACCCAG__
 71 72 73 74 75 76 77 78 79 80 81 82 83 84
_Input profile
CGAGCCACAGACACAGAACGCCAAAATT
1._PA_7_[PER]___
CGAGCCACAGACACAGAACGCCAAAATT
2._PA_7_[PER]___
CGAGCCACAGACACAGAACGCCAAAATT
3._PA_7_[PER]___
CGAGCCACAGACACAGAACGCCAAAATT
4._PA_7_[PER]___
CGAGCCACAGACACAGAACGCCAAAATT
5._PA_7_[PER]___
__AGCC__________AACG______TT
6._PA_7_[PER]___
__AGCC__________AACG______TT
7._PA_7_[PER]___
__AGCC__________AACG______TT
8._PA_7_[PER]___
__AGCC__________AACG______TT
9._PA_7_[PER]___
__AGCC__________AACG______TT
10._PA_7_[PER]___
__AGCC__________AACG______TT
11._PA_7_[PER]___
__AGCC__________AACG______TT
12._PA_7_[PER]___
__AGCC__________AACG______TT
13._PA_7_[PER]___
________________AACG____AATT
14._PA_7_[PER]___
__AACC__________AACG______TT
15._PA_7_[PER]___
__AA____________AACG____AA__
16._PA_7_[PER]___
____GGACAGACAC__AACGGGAAAAAA
 85 86 87 88 89 90 91 92 93 94     
_Input profile
CCCCCTAACCCCTTTTAAGGX_XX_XX_XX_X
1._PA_7_[PER]___
CCCCCTAACCCCTTTTAAGGX_XX_XX_XX_X
2._PA_7_[PER]___
CCCCCTAACCCCTTTTAAGGX_XX_XX_XX_X
3._PA_7_[PER]___
CCCCCTAACCCCTTTTAAGGX_XX_XX_XX_X
4._PA_7_[PER]___
CCCCCTAACCCCTTTTAAGGX_XX_XX_XX_X
5._PA_7_[PER]___
CCCC__AA__CCTTTT____X_XX_XX_XX_X
6._PA_7_[PER]___
CCCC__AA__CCTTTT____X_XX_XX_XX_X
7._PA_7_[PER]___
CCCC__AA__CCTTTT____X_XX_XX_XX_X
8._PA_7_[PER]___
CCCC__AA__CCTTTT____X_XX_XX_XX_X
9._PA_7_[PER]___
CCCC__AA__CCTTTT____X_XX_XX_XX_X
10._PA_7_[PER]___
CCCC__AA__CCTTTT____X_XX_XX_XX_X
11._PA_7_[PER]___
CCCC__AA__CCTTTT____X_XX_XX_XX_X
12._PA_7_[PER]___
CCCC__AA__CCTTTT____X_XX_XX_XX_X
13._PA_7_[PER]___
______AACCCCTT______X_XX_XX_XX_X
14._PA_7_[PER]___
CCCC__AA__CCTTTT____X_XX_XX_XX_X
15._PA_7_[PER]___
__CC____CC__TT______X_XX_XX_XX_X
16._PA_7_[PER]___
GG__AG____GGAAAATTGGX_XX_XX_XX_X

Input profile: PA_7_[PER] GC-04-030-2-12

 
Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2 > FP4
 Mars, 2018

1._PA_7_[PER] GC-04-030-2-12

identical
94 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 8
Notes: 8
 Mars, 2018

2._PA_7_[PER] GC-04-030-2-12

identical
94 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 7
Notes: 7 > FP2
 Mars, 2018

3._PA_7_[PER] GC-04-030-2-12

identical
94 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3 > FP3
 Mars, 2018

4._PA_7_[PER] GC-04-030-2-12

identical
94 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1 > FP1
 Mars, 2018

5._PA_7_[PER]

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 4212 7 > FP
 Dapeng Zhang, 2016

6._PA_7_[PER]

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 4212 3 > FP
 Dapeng Zhang, 2016

7._PA_7_[PER]

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 4212 8
 Dapeng Zhang, 2016

8._PA_7_[PER]

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 4212 1 > FP
 Dapeng Zhang, 2016

9._PA_7_[PER]

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 4212 2 > FP
 Dapeng Zhang, 2016

10._PA_7_[PER]

98.8 %
40 shared markers

Cocoa Research Institute of Ghana (CRIG), Ghana
Location: P61 842
 Dapeng Zhang, 2016

11._PA_7_[PER]

98.8 %
40 shared markers

Indonesian Coffee and Cocoa Research Institute (ICCRI), Indonesia
Location: KW 185 I-033
 Dapeng Zhang, 2016

12._PA_7_[PER]

98.8 %
40 shared markers

Malaysian Cocoa Board (MCB), Malaysia
Location: Row 2 C0214 27
 Dapeng Zhang, 2016

13._PA_7_[PER] RUQ_113

97.7 %
43 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

14._PA_7_[PER] RUQ_113

97.5 %
40 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2016

15._PA_7_[PER] RUQ_113

92.9 %
21 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Lambert Motilal, 2023
Population Assignment: 

16._PA_7_[PER] RUQ_113

48.8 %
80 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
Notes: Reading_Collection
 Mars, 2018

 


  Key to SNP Markers

1TcSNP1075 2TcSNP1350 3TcSNP534 4TcSNP591 5TcSNP42
6TcSNP418 7TcSNP702 8TcSNP1096 9TcSNP1060 10TcSNP1165
11TcSNP429 12TcSNP75 13TcSNP891 14TcSNP122 15TcSNP316
16TcSNP521 17TcSNP1062 18TcSNP836 19TcSNP878 20TcSNP929
21TcSNP413 22TcSNP653 23TcSNP1149 24TcSNP174 25TcSNP32
26TcSNP372 27TcSNP448 28TcSNP872 29TcSNP953 30TcSNP1034
31TcSNP1175 32TcSNP1111 33TcSNP577 34TcSNP90 35TcSNP998
36TcSNP150 37TcSNP28 38TcSNP751 39TcSNP1484 40TcSNP602
41TcSNP561 42TcSNP894 43TcSNP1063 44TcSNP1126 45TcSNP1270
46TcSNP606 47TcSNP329 48TcSNP689 49TcSNP944 50TcSNP1242
51TcSNP1383 52TcSNP547 53TcSNP776 54TcSNP1309 55TcSNP151
56TcSNP1520 57TcSNP799 58TcSNP899 59TcSNP226 60TcSNP1439
61TcSNP1442 62TcSNP193 63TcSNP25 64TcSNP364 65TcSNP144
66TcSNP230 67TcSNP560 68TcSNP723 69TcSNP731 70TcSNP701
71TcSNP1041 72TcSNP645 73TcSNP917 74Tcm003s01336581 75Tcm003s07402719
76Tcm001s00947643 77Tcm006s26664133 78Tcm002s20575712 79TcSNP529 80TcSNP1458
81TcSNP60 82TcSNP430 83TcSNP823 84TcSNP619 85TcSNP994
86TcSNP1144 87TcSNP1156 88TcSNP469 89TcSNP999 90TcSNP242
91TcSNP1253 92TcSNP1414 93TcSNP154 94TcSNP240