SNP Profiles of PA-7   View Data

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 Key

 1234567891011121314
_Input profile
AACCCCCCGGAACCCCCCCCGGTTCCTT
1._GC-04-030-2-12
AACCCCCCGGAACCCCCCCCGGTTCCTT
2._GC-04-030-2-12
AACCCCCCGGAACCCCCCCCGGTTCCTT
3._GC-04-030-2-12
AACCCCCCGGAACCCCCCCCGGTTCCTT
4._GC-04-030-2-12
AACCCCCCGGAACCCCCCCCGGTTCCTT
5._PA_7_[PER]
AACCCCCC________CCCCGG__CC__
6._PA_7_[PER]
AACCCCCC________CCCCGG__CC__
7._PA_7_[PER]
AACCCCCC________CCCCGG__CC__
8._PA_7_[PER]
AACCCCCC________CCCCGG__CC__
9._PA_7_[PER]
AACCCCCC________CCCCGG__CC__
10._PA_7_[PER]
AACCCCCC________CCCCGG__CC__
11._PA_7_[PER]
AACCCCCC________CCCCGG__CC__
12._PA_7_[PER]
AACCCCCC________CCCCGG__CC__
13._RUQ_113
____CCCC____CC__CC____TTCC__
14._RUQ_113
AACCCCCC________CCCCGG__CC__
15._RUQ_113
______CC____CC______________
16._RUQ_113
AACC__CCGGAA__GGGG__GGAAGGAA
 1516171819202122232425262728
_Input profile
AACCGGGGCCCCCTAATTGGATAACCGG
1._GC-04-030-2-12
AACCGGGGCCCCCTAATTGGATAACCGG
2._GC-04-030-2-12
AACCGGGGCCCCCTAATTGGATAACCGG
3._GC-04-030-2-12
AACCGGGGCCCCCTAATTGGATAACCGG
4._GC-04-030-2-12
AACCGGGGCCCCCTAATTGGATAACCGG
5._PA_7_[PER]
____GG____CC________ATAA__GG
6._PA_7_[PER]
____GG____CC________ATAA__GG
7._PA_7_[PER]
____GG____CC________ATAA__GG
8._PA_7_[PER]
____GG____CC________ATAA__GG
9._PA_7_[PER]
____GG____CC________ATAA__GG
10._PA_7_[PER]
____GG____CC________ATAA__GG
11._PA_7_[PER]
____GG____CC________ATAA__GG
12._PA_7_[PER]
____GG____CC________ATAA__GG
13._RUQ_113
________CC________GG__AACCGG
14._RUQ_113
____GG____CC________ATAA__GG
15._RUQ_113
____GGTT__________________GG
16._RUQ_113
TTCCGGCC__CCAGAGAAGGATAAGGCC
 2930313233343536373839404142
_Input profile
AATTGTGGGGCCAGGGGGGTAGCCAGCC
1._GC-04-030-2-12
AATTGTGGGGCCAGGGGGGTAGCCAGCC
2._GC-04-030-2-12
AATTGTGGGGCCAGGGGGGTAGCCAGCC
3._GC-04-030-2-12
AATTGTGGGGCCAGGGGGGTAGCCAGCC
4._GC-04-030-2-12
AATTGTGGGGCCAGGGGGGTAGCCAGCC
5._PA_7_[PER]
AA______GG__AGGG____AG______
6._PA_7_[PER]
AA______GG__AGGG____AG______
7._PA_7_[PER]
AA______GG__AGGG____AG______
8._PA_7_[PER]
AA______GG__AGGG____AG______
9._PA_7_[PER]
AA______GG__AGGG____AG______
10._PA_7_[PER]
AA______GG__AGGG____AG______
11._PA_7_[PER]
AA______GG__AGGG____AG______
12._PA_7_[PER]
AA______GG__AGGG____AG______
13._RUQ_113
______GGGGCCAGGG____AGCC____
14._RUQ_113
AA______GG__AGGG____AG______
15._RUQ_113
________GG__AG________CC____
16._RUQ_113
AAAAACGGGGCCAGCCCCACAGGGAGGG
 4344454647484950515253545556
_Input profile
GGTTCTAAGGAACCCCGGAAGGTTCTCT
1._GC-04-030-2-12
GGTTCTAAGGAACCCCGGAAGGTTCTCT
2._GC-04-030-2-12
GGTTCTAAGGAACCCCGGAAGGTTCTCT
3._GC-04-030-2-12
GGTTCTAAGGAACCCCGGAAGGTTCTCT
4._GC-04-030-2-12
GGTTCTAAGGAACCCCGGAAGGTTCTCT
5._PA_7_[PER]
____CT__________________CTCT
6._PA_7_[PER]
____CT__________________CTCT
7._PA_7_[PER]
____CT__________________CTCT
8._PA_7_[PER]
____CT__________________CTCT
9._PA_7_[PER]
____CT__________________CTCT
10._PA_7_[PER]
____CT__________________CTCT
11._PA_7_[PER]
____CT__________________CTCT
12._PA_7_[PER]
____CT__________________CTCT
13._RUQ_113
GGTT____GG____________CTCT__
14._RUQ_113
____CT__________________CTCT
15._RUQ_113
________GG__________________
16._RUQ_113
CC__AG__GGAAGG__GGAACCAGAGAG
 5758596061626364656667686970
_Input profile
TTGGCCCCCTAAGGGGAAAGGTGGAGCC
1._GC-04-030-2-12
TTGGCCCCCTAAGGGGAAAGGTGGAGCC
2._GC-04-030-2-12
TTGGCCCCCTAAGGGGAAAGGTGGAGCC
3._GC-04-030-2-12
TTGGCCCCCTAAGGGGAAAGGTGGAGCC
4._GC-04-030-2-12
TTGGCCCCCTAAGGGGAAAGGTGGAGCC
5._PA_7_[PER]
____CC__CTAAGG__AAAGGTGG____
6._PA_7_[PER]
____CC__CTAAGG__AAAGGTGG____
7._PA_7_[PER]
____CC__CTAAGG__AAAGGTGG____
8._PA_7_[PER]
____CC__CTAAGG__AAAGGTGG____
9._PA_7_[PER]
____CC__CTAAGG__AAAGGTGG____
10._PA_7_[PER]
____CC__CTACGG__AAAGGTGG____
11._PA_7_[PER]
____CC__CTACGG__AAAGGTGG____
12._PA_7_[PER]
____CC__CTACGG__AAAGGTGG____
13._RUQ_113
TTGGCCCCCTAC__GGAAAGGTGGAG__
14._RUQ_113
____CC__CTACGG__AAAGGTGG____
15._RUQ_113
__GG____________AAAG__GGAG__
16._RUQ_113
AAGGGGGGAGACGGGGAAAGACCCAG__
 7172737475767778798081828384
_Input profile
CGAGCCACAGACACAGAACGCCAAAATT
1._GC-04-030-2-12
CGAGCCACAGACACAGAACGCCAAAATT
2._GC-04-030-2-12
CGAGCCACAGACACAGAACGCCAAAATT
3._GC-04-030-2-12
CGAGCCACAGACACAGAACGCCAAAATT
4._GC-04-030-2-12
CGAGCCACAGACACAGAACGCCAAAATT
5._PA_7_[PER]
__AGCC__________AACG______TT
6._PA_7_[PER]
__AGCC__________AACG______TT
7._PA_7_[PER]
__AGCC__________AACG______TT
8._PA_7_[PER]
__AGCC__________AACG______TT
9._PA_7_[PER]
__AGCC__________AACG______TT
10._PA_7_[PER]
__AGCC__________AACG______TT
11._PA_7_[PER]
__AGCC__________AACG______TT
12._PA_7_[PER]
__AGCC__________AACG______TT
13._RUQ_113
________________AACG____AATT
14._RUQ_113
__AACC__________AACG______TT
15._RUQ_113
__AA____________AACG____AA__
16._RUQ_113
____GGACAGACAC__AACGGGAAAAAA
 85868788899091929394    
_Input profile
CCCCCTAACCCCTTTTAAGGX_XX_XX_XX_X
1._GC-04-030-2-12
CCCCCTAACCCCTTTTAAGGX_XX_XX_XX_X
2._GC-04-030-2-12
CCCCCTAACCCCTTTTAAGGX_XX_XX_XX_X
3._GC-04-030-2-12
CCCCCTAACCCCTTTTAAGGX_XX_XX_XX_X
4._GC-04-030-2-12
CCCCCTAACCCCTTTTAAGGX_XX_XX_XX_X
5._PA_7_[PER]
CCCC__AA__CCTTTT____X_XX_XX_XX_X
6._PA_7_[PER]
CCCC__AA__CCTTTT____X_XX_XX_XX_X
7._PA_7_[PER]
CCCC__AA__CCTTTT____X_XX_XX_XX_X
8._PA_7_[PER]
CCCC__AA__CCTTTT____X_XX_XX_XX_X
9._PA_7_[PER]
CCCC__AA__CCTTTT____X_XX_XX_XX_X
10._PA_7_[PER]
CCCC__AA__CCTTTT____X_XX_XX_XX_X
11._PA_7_[PER]
CCCC__AA__CCTTTT____X_XX_XX_XX_X
12._PA_7_[PER]
CCCC__AA__CCTTTT____X_XX_XX_XX_X
13._RUQ_113
______AACCCCTT______X_XX_XX_XX_X
14._RUQ_113
CCCC__AA__CCTTTT____X_XX_XX_XX_X
15._RUQ_113
__CC____CC__TT______X_XX_XX_XX_X
16._RUQ_113
GG__AG____GGAAAATTGGX_XX_XX_XX_X

Input profile: PA_7_[PER] GC-04-030-2-12

 
Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2 > FP4
 Mars, 2018

1._PA_7_[PER] GC-04-030-2-12

identical
94 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 8
Notes: 8
 Mars, 2018

2._PA_7_[PER] GC-04-030-2-12

identical
94 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 7
Notes: 7 > FP2
 Mars, 2018

3._PA_7_[PER] GC-04-030-2-12

identical
94 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3 > FP3
 Mars, 2018

4._PA_7_[PER] GC-04-030-2-12

identical
94 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1 > FP1
 Mars, 2018

5._PA_7_[PER]

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 4212 7 > FP
 Dapeng Zhang, 2016

6._PA_7_[PER]

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 4212 3 > FP
 Dapeng Zhang, 2016

7._PA_7_[PER]

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 4212 8
 Dapeng Zhang, 2016
Population Assignment: 
 Dapeng Zhang, 2016

8._PA_7_[PER]

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 4212 1 > FP
 Dapeng Zhang, 2016

9._PA_7_[PER]

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 4212 2 > FP
 Dapeng Zhang, 2016

10._PA_7_[PER]

98.8 %
40 shared markers

Cocoa Research Institute of Ghana (CRIG), Ghana
Location: P61 842
 Dapeng Zhang, 2016

11._PA_7_[PER]

98.8 %
40 shared markers

Indonesian Coffee and Cocoa Research Institute (ICCRI), Indonesia
Location: KW 185 I-033
 Dapeng Zhang, 2016

12._PA_7_[PER]

98.8 %
40 shared markers

Malaysian Cocoa Board (MCB), Malaysia
Location: Row 2 C0214 27
 Dapeng Zhang, 2016

13._PA_7_[PER] RUQ_113

97.7 %
43 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

14._PA_7_[PER] RUQ_113

97.5 %
40 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2016

15._PA_7_[PER] RUQ_113

92.9 %
21 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Lambert Motilal, 2023

16._PA_7_[PER] RUQ_113

48.8 %
80 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
Notes: Reading_Collection
 Mars, 2018

 


  Key to SNP Markers

1TcSNP1075 2TcSNP1350 3TcSNP534 4TcSNP591 5TcSNP42
6TcSNP418 7TcSNP702 8TcSNP1096 9TcSNP1060 10TcSNP1165
11TcSNP429 12TcSNP75 13TcSNP891 14TcSNP122 15TcSNP316
16TcSNP521 17TcSNP1062 18TcSNP836 19TcSNP878 20TcSNP929
21TcSNP413 22TcSNP653 23TcSNP1149 24TcSNP174 25TcSNP32
26TcSNP372 27TcSNP448 28TcSNP872 29TcSNP953 30TcSNP1034
31TcSNP1175 32TcSNP1111 33TcSNP577 34TcSNP90 35TcSNP998
36TcSNP150 37TcSNP28 38TcSNP751 39TcSNP1484 40TcSNP602
41TcSNP561 42TcSNP894 43TcSNP1063 44TcSNP1126 45TcSNP1270
46TcSNP606 47TcSNP329 48TcSNP689 49TcSNP944 50TcSNP1242
51TcSNP1383 52TcSNP547 53TcSNP776 54TcSNP1309 55TcSNP151
56TcSNP1520 57TcSNP799 58TcSNP899 59TcSNP226 60TcSNP1439
61TcSNP1442 62TcSNP193 63TcSNP25 64TcSNP364 65TcSNP144
66TcSNP230 67TcSNP560 68TcSNP723 69TcSNP731 70TcSNP701
71TcSNP1041 72TcSNP645 73TcSNP917 74Tcm003s01336581 75Tcm003s07402719
76Tcm001s00947643 77Tcm006s26664133 78Tcm002s20575712 79TcSNP529 80TcSNP1458
81TcSNP60 82TcSNP430 83TcSNP823 84TcSNP619 85TcSNP994
86TcSNP1144 87TcSNP1156 88TcSNP469 89TcSNP999 90TcSNP242
91TcSNP1253 92TcSNP1414 93TcSNP154 94TcSNP240