SNP Profiles of NA 33   View Data

 Show/Hide Profiles

 Key

 1 2 3 4 5 6 7 8 9 10 11 12 13 14
_Input profile
AACCCTAAGGAGCCCCCTCCGGTTCCTT
1._IMC_11___
AACCCTAAGGAGCCCCCTCCGGTTCCTT
2._IMC_11___
AACCCTAAGGAGCCCCCTCCGGTTCCTT
3._IMC_11___
AACCCTAAGGAGCCCCCTCCGGTTCCTT
4._IMC_11___
AACCCTAAGGAGCCCCCTCCGGTTCCTT
5._IMC_11___
AACCCTAA________CTCCGG__CC__
6._IMC_11___
AACCCTAA________CTCCGG__CC__
7._IMC_11___
AACCCTAA________CTCCGG__CC__
8._IMC_11___
AACCCTAA________CTCCGG__CC__
9._IMC_11___
AACCCTAA________CTCCGG__CC__
10._IMC_11___
AACCCTAA________CTCCGG__CC__
11._IMC_11___
AACCCTAA________CTCCAG__CC__
12._IMC_11___
____CTAA____TT__CT____TTCC__
13._IMC_11___
______AA____TT______________
14._IMC_11___
AACC__AAGGAG__GGAG__GGAAGGAA
15._IMC_11___
AACC__AAGGAG__GGAG__GGAAGGAA
16._IMC_11___
AACC__AAGGAG__GGAG__GGAAGGAA
17._IMC_11___
AACC__AAGGAG__GGAG__GGAAGGAA
 15 16 17 18 19 20 21 22 23 24 25 26 27 28
_Input profile
AAAAGGCGCCGGCCAATTGGTTAACCCC
1._IMC_11___
AAAAGGCGCCGGCCAATTGGTTAACCCC
2._IMC_11___
AAAAGGCGCCGGCCAATTGGTTAACCCC
3._IMC_11___
AAAAGGCGCCGGCCAATTGGTTAACCCC
4._IMC_11___
AAAAGGCGCCGGCCAATTGGTTAACCCC
5._IMC_11___
____GG____GG________TTAA__CC
6._IMC_11___
____GG____GG________TTAA__CC
7._IMC_11___
____GG____GG________TTAA__CC
8._IMC_11___
____GG____GG________TTAA__CC
9._IMC_11___
____GG____GG________TTAA__CC
10._IMC_11___
____GG____GG________TTAA__CC
11._IMC_11___
____GG____GG________TTAA__CC
12._IMC_11___
________CC________GG__AACCCC
13._IMC_11___
____GGTT__________________CC
14._IMC_11___
TTAAGGCG__GGGGAAAAGGTTAAGGGG
15._IMC_11___
TTAAGGCG__GGGGAAAAGGTTAAGGGG
16._IMC_11___
TTAAGGCG__GGGGAAAAGGTTAAGGGG
17._IMC_11___
TTAAGGCG__GGGGAAAAGGTTAAGGGG
 29 30 31 32 33 34 35 36 37 38 39 40 41 42
_Input profile
AATTGGGGGGCCAAGTGGTTAGCCGGCC
1._IMC_11___
AATTGGGGGGCCAAGTGGTTAGCCGGCC
2._IMC_11___
AATTGGGGGGCCAAGTGGTTAGCCGGCC
3._IMC_11___
AATTGGGGGGCCAAGTGGTTAGCCGGCC
4._IMC_11___
AATTGGGGGGCCAAGTGGTTAGCCGGCC
5._IMC_11___
AA______GG__AAGT____AG______
6._IMC_11___
AA______GG__AAGT____AG______
7._IMC_11___
AA______GG__AAGT____AG______
8._IMC_11___
AA______GG__AAGT____AG______
9._IMC_11___
AA______GG__AAGT____AG______
10._IMC_11___
AA______GG__AAGT____AG______
11._IMC_11___
AA______GG__AAGT____AG______
12._IMC_11___
______GGGGCCAAGT____AGCC____
13._IMC_11___
________GG__AA________CC____
14._IMC_11___
AAAACCGGGGCCAAACCCAAAGGGGGGG
15._IMC_11___
AAAACCGGGGCCAAACCCAAAGGGGGGG
16._IMC_11___
AAAACCGGGGCCAAACCCAAAGGGGGGG
17._IMC_11___
AAAACCGGGGCCAAACCCAAAGGGGGGG
 43 44 45 46 47 48 49 50 51 52 53 54 55 56
_Input profile
GGTTTTAGAGAACCCCGGAGTTTTCTCC
1._IMC_11___
GGTTTTAGAGAACCCCGGAGTTTTCTCC
2._IMC_11___
GGTTTTAGAGAACCCCGGAGTTTTCTCC
3._IMC_11___
GGTTTTAGAGAACCCCGGAGTTTTCTCC
4._IMC_11___
GGTTTTAGAGAACCCCGGAGTTTTCTCC
5._IMC_11___
____TT__________________CTCC
6._IMC_11___
____TT__________________CTCC
7._IMC_11___
____TT__________________CTCC
8._IMC_11___
____TT__________________CTCC
9._IMC_11___
____TT__________________CTCC
10._IMC_11___
____TT__________________CTCC
11._IMC_11___
____TT__________________CTCC
12._IMC_11___
GGTT____AG____________TTCT__
13._IMC_11___
________AG__________________
14._IMC_11___
CC__AA__AGAAGG__GGAGAAAAAGGG
15._IMC_11___
CC__AA__AGAAGG__GGAGAAAAAGGG
16._IMC_11___
CC__AA__AGAAGG__GGAGAAAAAGGG
17._IMC_11___
CC__AA__AGAAGG__GGAGAAAAAGGG
 57 58 59 60 61 62 63 64 65 66 67 68 69 70
_Input profile
TTGGCGCCTTAAGGGGACAGGGGGGGTT
1._IMC_11___
TTGGCGCCTTAAGGGGACAGGGGGGGTT
2._IMC_11___
TTGGCGCCTTAAGGGGACAGGGGGGGTT
3._IMC_11___
TTGGCGCCTTAAGGGGACAGGGGGGGTT
4._IMC_11___
TTGGCGCCTTAAGGGGACAGGGGGGGTT
5._IMC_11___
____CG__TTAAGG__ACAGGGGG____
6._IMC_11___
____CG__TTAAGG__ACAGGGGG____
7._IMC_11___
____CG__TTAAGG__ACAGGGGG____
8._IMC_11___
____CG__TTAAGG__ACAGGGGG____
9._IMC_11___
____CG__TTAAGG__ACAGGGGG____
10._IMC_11___
____CG__TTACGG__ACAGGGGG____
11._IMC_11___
____CG__TTACGG__ACAGGGGG____
12._IMC_11___
TT__CGCCTTAC__GGACAGGGGGGG__
13._IMC_11___
__GG____________ACAG__GGGG__
14._IMC_11___
AAGGCGGGAAACGGGGACAGCCCCGG__
15._IMC_11___
AAGGCGGGAAACGGGGACAGCCCCGG__
16._IMC_11___
AAGGCGGGAAACGGGGACAGCCCCGG__
17._IMC_11___
AAGGCGGGAAACGGGGACAGCCCCGG__
 71 72 73 74 75 76 77 78 79 80 81 82 83 84
_Input profile
CCAACCAAAAACACAGCCCGCCATACCC
1._IMC_11___
CCAACCAAAAACACAGCCCGCCATACCC
2._IMC_11___
CCAACCAAAAACACAGCCCGCCATACCC
3._IMC_11___
CCAACCAAAAACACAGCCCGCCATACCC
4._IMC_11___
CCAACCAAAAACACAG__CGCCATACCC
5._IMC_11___
__AACC__________CCCG______CC
6._IMC_11___
__AACC__________CCCG______CC
7._IMC_11___
__AACC__________CCCG______CC
8._IMC_11___
__AACC__________CCCG______CC
9._IMC_11___
__AACC____________CG______CC
10._IMC_11___
__AACC__________CCCG______CC
11._IMC_11___
__AACC__________CCCG______CC
12._IMC_11___
________________CCCG____ACCC
13._IMC_11___
__AA______________CG____AC__
14._IMC_11___
____GGAAAAACAC__CCCGGGATACGG
15._IMC_11___
____GGAAAAACAC__CCCGGGATACGG
16._IMC_11___
____GGAAAAACAC__CCCGGGATACGG
17._IMC_11___
____GGAAAAACAC__CCCGGGATACGG
 85 86 87 88 89 90 91 92 93 94     
_Input profile
TTCCCTAACCTTGTTTATGGX_XX_XX_XX_X
1._IMC_11___
TTCCCTAACCTTGTTTATGGX_XX_XX_XX_X
2._IMC_11___
TTCCCTAACCTTGTTTATGGX_XX_XX_XX_X
3._IMC_11___
TTCCCTAACCTTGTTTATGGX_XX_XX_XX_X
4._IMC_11___
TTCCCTAACCTTGTTTATGGX_XX_XX_XX_X
5._IMC_11___
TTCC__AA__TTGTTT____X_XX_XX_XX_X
6._IMC_11___
TTCC__AA__TTGTTT____X_XX_XX_XX_X
7._IMC_11___
TTCC__AA__TTGTTT____X_XX_XX_XX_X
8._IMC_11___
TTCC__AA__TTGTTT____X_XX_XX_XX_X
9._IMC_11___
TTCC__AA__TTGTTT____X_XX_XX_XX_X
10._IMC_11___
TTCC__AA__TTGTTT____X_XX_XX_XX_X
11._IMC_11___
TTCC__AA__TTGTTT____X_XX_XX_XX_X
12._IMC_11___
______AACCTTGT______X_XX_XX_XX_X
13._IMC_11___
__CC____CC__GT______X_XX_XX_XX_X
14._IMC_11___
AA__AG____AAAAAAATGGX_XX_XX_XX_X
15._IMC_11___
AA__AG____AAAAAAATGGX_XX_XX_XX_X
16._IMC_11___
AA__AG____AAAAAAATGGX_XX_XX_XX_X
17._IMC_11___
AA__AG____AAAAAAATGGX_XX_XX_XX_X

Input profile: IMC_11 GC-04-029-2-11

 
Mars Center for Cocoa Science, Brazil
Location: Tree: 5
Notes: 5
 Mars, 2018

1._IMC_11 GC-04-029-2-11

identical
94 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 8
Notes: 8
 Mars, 2018

2._IMC_11 GC-04-029-2-11

identical
94 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 6
Notes: 6 > FP3
 Mars, 2018

3._IMC_11 GC-04-029-2-11

identical
94 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1 > FP1
 Mars, 2018

4._IMC_11 GC-04-029-2-11

identical
93 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2 > FP4
 Mars, 2018

5._IMC_11

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 4211 6 > FP
 Dapeng Zhang, 2016

6._IMC_11

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 4211 1 > FP
 Dapeng Zhang, 2016

7._IMC_11

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 4211 8
 Dapeng Zhang, 2016

8._IMC_11

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 4211 5
 Dapeng Zhang, 2016

9._IMC_11

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 4211 2 > FP
 Dapeng Zhang, 2016

10._IMC_11

98.8 %
40 shared markers

International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: 6B F423 T1
 Dapeng Zhang, 2016

11._IMC_11 RUQ_8

97.5 %
40 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2016

12._IMC_11 RUQ_8

96.4 %
42 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

13._IMC_11 RUQ_8

90 %
20 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Lambert Motilal, 2023
Population Assignment: 

14._IMC_11 GC-04-29-2-11

53.1 %
80 shared markers

Mars Center for Cocoa Science, Brazil
Location: Field: 4, Block: 2, Rep: 11, Tree: 5
Notes: MCCS_Structure_refs_above_0.9membership
 Mars, 2018

15._IMC_11 RUQ_8

53.1 %
80 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
Notes: Reading_Collection
 Mars, 2018

16._IMC_11 MITC-000647

53.1 %
80 shared markers

USDA-SHRS, United States of America
 Mars, 2018

17._IMC_11 IMC_11_Fld#_165_Plt#_2

53.1 %
80 shared markers

USDA-TARS, United States of America
Location: Field: 165, Tree: 2
 Mars, 2018

 


  Key to SNP Markers

1TcSNP1075 2TcSNP1350 3TcSNP534 4TcSNP591 5TcSNP42
6TcSNP418 7TcSNP702 8TcSNP1096 9TcSNP1060 10TcSNP1165
11TcSNP429 12TcSNP75 13TcSNP891 14TcSNP122 15TcSNP316
16TcSNP521 17TcSNP1062 18TcSNP836 19TcSNP878 20TcSNP929
21TcSNP413 22TcSNP653 23TcSNP1149 24TcSNP174 25TcSNP32
26TcSNP372 27TcSNP448 28TcSNP872 29TcSNP953 30TcSNP1034
31TcSNP1175 32TcSNP1111 33TcSNP577 34TcSNP90 35TcSNP998
36TcSNP150 37TcSNP28 38TcSNP751 39TcSNP1484 40TcSNP602
41TcSNP561 42TcSNP894 43TcSNP1063 44TcSNP1126 45TcSNP1270
46TcSNP606 47TcSNP329 48TcSNP689 49TcSNP944 50TcSNP1242
51TcSNP1383 52TcSNP547 53TcSNP776 54TcSNP1309 55TcSNP151
56TcSNP1520 57TcSNP799 58TcSNP899 59TcSNP226 60TcSNP1439
61TcSNP1442 62TcSNP193 63TcSNP25 64TcSNP364 65TcSNP144
66TcSNP230 67TcSNP560 68TcSNP723 69TcSNP731 70TcSNP701
71TcSNP1041 72TcSNP645 73TcSNP917 74Tcm003s01336581 75Tcm003s07402719
76Tcm001s00947643 77Tcm006s26664133 78Tcm002s20575712 79TcSNP529 80TcSNP1458
81TcSNP60 82TcSNP430 83TcSNP823 84TcSNP619 85TcSNP994
86TcSNP1144 87TcSNP1156 88TcSNP469 89TcSNP999 90TcSNP242
91TcSNP1253 92TcSNP1414 93TcSNP154 94TcSNP240