SNP Profiles of LV 20 [POU]   View Data

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 Key

 1234567891011121314
_Input profile
ATAATTCCAGAGCTCTCCCCGGTTCTCC
1._GC-04-027-2-09
ATAATTCCAGAGCTCTCCCCGGTTCTCC
2._GC-04-027-2-09
ATAATTCCAGAGCTCTCCCCGGTTCTCC
3._GC-04-027-2-09
ATAATTCCAGAGCTCTCCCCGGTTCTCC
4._LV_20_[POU]
ATAATTCC____CCCCGG_CT_
5._LV_20_[POU]
ATAATTCC____CCCCGG_CT_
6._LV_20_[POU]
ATAATTCC____CCCCGG_CT_
7._LV_20_[POU]
ATAATTCC____CCCCGG_CT_
8._RUQ_354
__TTCC__CC_CC__TTTT_
9._RUQ_354
ATACTTCC____CCCCGG_CT_
10._LV_20_[POU]
ATACTTCC____CCCCGG_CT_
11._LV_20_[POU]
ATACTTCC____CCCCGG_CT_
12._RUQ_354
___CC__CC_______
13._RUQ_354
ATAC_CCAGAG_AGGG_GGAAAGGG
 1516171819202122232425262728
_Input profile
AACCAAAGGGCGGGTTAATTGGTTAACC
1._GC-04-027-2-09
AACCAAAGGGCGGGTTAATTGGTTAACC
2._GC-04-027-2-09
AACCAAAGGGCGGGTTAATTGGTTAACC
3._GC-04-027-2-09
AACCAAAGGGCGGGTTAATTGGTTAACC
4._LV_20_[POU]
___AG__GG____TTAA_
5._LV_20_[POU]
___AG__GG____TTAA_
6._LV_20_[POU]
___AG__GG____TTAA_
7._LV_20_[POU]
___AG__GG____TTAA_
8._RUQ_354
_____CG____GG_AACC
9._RUQ_354
___AG__GG____TTAA_
10._LV_20_[POU]
___AG__GG____TTAA_
11._LV_20_[POU]
___AG__GG____TTAA_
12._RUQ_354
___AGCT_________
13._RUQ_354
TTCCAAAGCC_GGAAAGAAGGTTAAGG
 2930313233343536373839404142
_Input profile
GGATTTGGAGCGCCAGGTGGTTAGCTAA
1._GC-04-027-2-09
GGATTTGGAGCGCCAGGTGGTTAGCTAA
2._GC-04-027-2-09
GGATTTGGAGCGCCAGGTGGTTAGCTAA
3._GC-04-027-2-09
GGATTTGGAGCGCCAGGTGGTTAGCTAA
4._LV_20_[POU]
GGAT___CG_AGGT__AG__
5._LV_20_[POU]
GGAT___CG_AGGT__AG__
6._LV_20_[POU]
GGAT___CG_AGGT__AG__
7._LV_20_[POU]
GGAT___CG_AGGT__AG__
8._RUQ_354
GG___AGCGCCAGGT__AGCT_
9._RUQ_354
GGAT___CG_AGGT__AG__
10._LV_20_[POU]
GGAT___CG_AGGT__AG__
11._LV_20_[POU]
GGAT___CG_AGGT__AG__
12._RUQ_354
GG____CG_AG____CT_
13._RUQ_354
CCATAACCAGCGCCAGACCCAAAGAGAA
 4344454647484950515253545556
_Input profile
CGGGTTCTAAGGAACCACGGGGTTTTCT
1._GC-04-027-2-09
CGGGTTCTAAGGAACCACGGGGTTTTCT
2._GC-04-027-2-09
CGGGTTCTAAGGAACCACGGGGTTTTCT
3._GC-04-027-2-09
CGGGTTCTAAGGAACCACGGGGTTTTCT
4._LV_20_[POU]
___CT_________CT
5._LV_20_[POU]
___CT_________CT
6._LV_20_[POU]
___CT_________CT
7._LV_20_[POU]
___CT_________CT
8._RUQ_354
_GGTT__GG______TTCT
9._RUQ_354
___CT_________CT
10._LV_20_[POU]
___CT_________CT
11._LV_20_[POU]
___CT_________CT
12._RUQ_354
_____GG________
13._RUQ_354
CGCC_AG_GGAAGG_GGGGAAAAAG
 5758596061626364656667686970
_Input profile
TTTTAGCCCTCTACCGAGCCAAGTGTAG
1._GC-04-027-2-09
TTTTAGCCCTCTACCGAGCCAAGTGTAG
2._GC-04-027-2-09
TTTTAGCCCTCTACCGAGCCAAGTGTAG
3._GC-04-027-2-09
TTTTAGCCCTCTACCGAGCCAAGTGTAG
4._LV_20_[POU]
TT__CC_CTACCG_CCAAGTGT_
5._LV_20_[POU]
TT__CC_CTACCG_CCAAGTGT_
6._LV_20_[POU]
TT__CC_CTACCG_CCAAGTGT_
7._LV_20_[POU]
TT__CC_CTACCG_CCAAGTGT_
8._RUQ_354
_TT-CCCTCTAC_AGCCAAGTGTAG
9._RUQ_354
TT__CC_CTACCG_CCAAGTGT_
10._LV_20_[POU]
TT__CC_CTACCG_CCAAGTGT_
11._LV_20_[POU]
TT__CC_CTACCG_CCAAGTGT_
12._RUQ_354
__AG______CCAA_GTAG
13._RUQ_354
AAAAAGGGAGAGACCGAGCCAAACACAG
 7172737475767778798081828384
_Input profile
CCCCAGCTACAGCCACAACCCGCCAAAC
1._GC-04-027-2-09
CCCCAGCTACAGCCACAACCCGCCAAAC
2._GC-04-027-2-09
CCCCAGCTACAGCCACAACCCGCCAAAC
3._GC-04-027-2-09
CCCCAGCTACAGCCACAACCCGCCAAAC
4._LV_20_[POU]
__AGCT_____CCCG___
5._LV_20_[POU]
__AGCT_____CCCG___
6._LV_20_[POU]
__AGCT_____CCCG___
7._LV_20_[POU]
__AGCT_____CCCG___
8._RUQ_354
_________CCCG__AC
9._RUQ_354
__GGCT_____CCCG___
10._LV_20_[POU]
__GGCT_____CCCG___
11._LV_20_[POU]
__GGCT_____CCCG___
12._RUQ_354
__GG______CCCG__AC
13._RUQ_354
___AGACAGCCAC_CCCGGGAAAC
 8586878889909192939495   
_Input profile
TTTTCTTTAGTTCCGTCTAAGGX_XX_XX_X
1._GC-04-027-2-09
TTTTCTTTAGTTCCGTCTAAGGX_XX_XX_X
2._GC-04-027-2-09
TTTTCTTTAGTTCCGTCTAAGGX_XX_XX_X
3._GC-04-027-2-09
TTTTCTTTAGTTCCGTCTAAGGX_XX_XX_X
4._LV_20_[POU]
TTTTCT_AG_CCGTCT__X_XX_XX_X
5._LV_20_[POU]
TTTTCT_AG_CCGTCT__X_XX_XX_X
6._LV_20_[POU]
TTTTCT_AG_CCGTCT__X_XX_XX_X
7._LV_20_[POU]
TTTTCT_AG_CCGTCT__X_XX_XX_X
8._RUQ_354
TT___AGTTCCGT___X_XX_XX_X
9._RUQ_354
TTTTCT_AG_CCGTCT__X_XX_XX_X
10._LV_20_[POU]
TTTTCT_AG_CCGTCT__X_XX_XX_X
11._LV_20_[POU]
TTTTCT_AG_CCGTCT__X_XX_XX_X
12._RUQ_354
__CT__TT_GT___X_XX_XX_X
13._RUQ_354
AAAA_AA__GGACAGTTGGX_XX_XX_X

Input profile: LV_20_[POU] GC-04-027-2-09

 
Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1
 Mars, 2018

1._LV_20_[POU] GC-04-027-2-09

identical
95 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3
 Mars, 2018

2._LV_20_[POU] GC-04-027-2-09

identical
95 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: 4 > FP4
 Mars, 2018

3._LV_20_[POU] GC-04-027-2-09

identical
95 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 8
Notes: 8 > FP3
 Mars, 2018

4._LV_20_[POU]

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 4209 8 > FP
 Dapeng Zhang, 2016

5._LV_20_[POU]

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 4209 4 > FP
 Dapeng Zhang, 2016

6._LV_20_[POU]

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 4209 3
 Dapeng Zhang, 2016

7._LV_20_[POU]

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 4209 1
 Dapeng Zhang, 2016
Population Assignment: 
 Dapeng Zhang, 2016

8._LV_20_[POU] RUQ_354

97.6 %
42 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

9._LV_20_[POU] RUQ_354

97.5 %
40 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2016

10._LV_20_[POU]

97.5 %
40 shared markers

International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: Marper C 562
 Dapeng Zhang, 2016

11._LV_20_[POU]

97.5 %
40 shared markers

International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: Marper C 563
 Dapeng Zhang, 2016

12._LV_20_[POU] RUQ_354

90.5 %
21 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Lambert Motilal, 2023

13._LV_20_[POU] RUQ_354

50.6 %
81 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
Notes: Reading_Collection
 Mars, 2018

 


  Key to SNP Markers

1TcSNP1075 2TcSNP1350 3TcSNP534 4TcSNP591 5TcSNP42
6TcSNP418 7TcSNP702 8TcSNP1096 9TcSNP1060 10TcSNP1165
11TcSNP429 12TcSNP75 13TcSNP891 14TcSNP122 15TcSNP316
16TcSNP521 17TcSNP860 18TcSNP1062 19TcSNP836 20TcSNP878
21TcSNP929 22TcSNP413 23TcSNP653 24TcSNP1149 25TcSNP174
26TcSNP32 27TcSNP372 28TcSNP448 29TcSNP872 30TcSNP953
31TcSNP1034 32TcSNP1175 33TcSNP1111 34TcSNP577 35TcSNP90
36TcSNP998 37TcSNP150 38TcSNP28 39TcSNP751 40TcSNP1484
41TcSNP602 42TcSNP561 43TcSNP894 44TcSNP1063 45TcSNP1126
46TcSNP1270 47TcSNP606 48TcSNP329 49TcSNP689 50TcSNP944
51TcSNP1242 52TcSNP1383 53TcSNP547 54TcSNP776 55TcSNP1309
56TcSNP151 57TcSNP1520 58TcSNP799 59TcSNP899 60TcSNP226
61TcSNP1439 62TcSNP1442 63TcSNP193 64TcSNP25 65TcSNP364
66TcSNP144 67TcSNP230 68TcSNP560 69TcSNP723 70TcSNP731
71TcSNP701 72TcSNP1041 73TcSNP645 74TcSNP917 75Tcm003s01336581
76Tcm003s07402719 77Tcm001s00947643 78Tcm006s26664133 79Tcm002s20575712 80TcSNP529
81TcSNP1458 82TcSNP60 83TcSNP430 84TcSNP823 85TcSNP619
86TcSNP994 87TcSNP1144 88TcSNP1156 89TcSNP469 90TcSNP999
91TcSNP242 92TcSNP1253 93TcSNP1414 94TcSNP154 95TcSNP240