SNP Profiles of NA-26   View Data

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 Key

 1234567891011121314
_Input profile
AACCCTACGGGGCCCCCTCCGGTTCCTT
1._GC-04-021-2-03
AACCCTACGGGGCCCCCTCCGGTTCCTT
2._GC-04-021-2-03
AACCCTACGGGGCCCCCTCCGGTTCCTT
3._GC-04-021-2-03
AACCCTACGGGGCCCCCTCCGGTTCCTT
4._GC-04-021-2-03
AACCCTACGGGGCCCCCTCCGGTTCCTT
5._NA_26
AACCCTAC________CTCCGG__CC__
6._NA_26
AACCCTAC________CTCCGG__CC__
7._NA_26
AACCCTAC________CTCCGG__CC__
8._NA_26
AACCCTAC________CTCCGG__CC__
9._NA_26
AACCCTAC________CTCCGG__CC__
10._RUQ_1230
AACCCTAC________CTCCGG__CC__
11._RUQ_1230
____CTAC____TT__CT____TTCC__
12._RUQ_1230
______AC________CT______CC__
13._RUQ_1230
______AC____TT______________
14._NA_26
ATCCCCAC________CCCTAG__TT__
15._RUQ_1230
AACC__ACGGGG__GGAG__GGAAGGAA
16._MITC-000034
AACC__ACGGGG__GGAG__GGAAGGAA
 1516171819202122232425262728
_Input profile
AAAAAGGGCCGGCTAATTGGTTATCCCC
1._GC-04-021-2-03
AAAAAGGGCCGGCTAATTGGTTATCCCC
2._GC-04-021-2-03
AAAAAGGGCCGGCTAATTGGTTATCCCC
3._GC-04-021-2-03
AAAAAGGGCCGGCTAATTGGTTATCCCC
4._GC-04-021-2-03
AAAAAGGGCCGGCTAATTGGTTATCCCC
5._NA_26
____AG____GG________TTAT__CC
6._NA_26
____AG____GG________TTAT__CC
7._NA_26
____AG____GG________TTAT__CC
8._NA_26
____AG____GG________TTAT__CC
9._NA_26
____AG____GG________TTAT__CC
10._RUQ_1230
____AG____GG________TTAT__CC
11._RUQ_1230
________CC________GG__ATCCCC
12._RUQ_1230
________GG__CT____GG__ATCCGG
13._RUQ_1230
____AGTT__________________CC
14._NA_26
____GG____GG________ATAT__CC
15._RUQ_1230
TTAAAGCC__GGAGAAAAGGTTATGGGG
16._MITC-000034
TTAAAGCC__GGAGAAAAGGTTATGGGG
 2930313233343536373839404142
_Input profile
AATTGTGGGGCCAGGGGGTTAACCGGCC
1._GC-04-021-2-03
AATTGTGGGGCCAGGGGGTTAACCGGCC
2._GC-04-021-2-03
AATTGTGGGGCCAGGGGGTTAACCGGCC
3._GC-04-021-2-03
AATTGTGGGGCCAGGGGGTTAACCGGCC
4._GC-04-021-2-03
AATTGTGGGGCCAGGGGGTTAACCGGCC
5._NA_26
AA______GG__AGGG____AA______
6._NA_26
AA______GG__AGGG____AA______
7._NA_26
AA______GG__AGGG____AA______
8._NA_26
AA______GG__AGGG____AA______
9._NA_26
AA______GG__AGGG____AA______
10._RUQ_1230
AA______GG__AGGG____AG______
11._RUQ_1230
______GGGGCCAGGG____AACC____
12._RUQ_1230
______GGGG________TT__CC____
13._RUQ_1230
________GG__AG________CC____
14._NA_26
AA______GG__AATT____AG______
15._RUQ_1230
AAAAACGGGGCCAGCCCCAAAAGGGGGG
16._MITC-000034
AAAAACGGGGCCAGCCCCAAAAGGGGGG
 4344454647484950515253545556
_Input profile
GGTTTTAAGGAACCCCGGAAGTTTCTCC
1._GC-04-021-2-03
GGTTTTAAGGAACCCCGGAAGTTTCTCC
2._GC-04-021-2-03
GGTTTTAAGGAACCCCGGAAGTTTCTCC
3._GC-04-021-2-03
GGTTTTAAGGAACCCCGGAAGTTTCTCC
4._GC-04-021-2-03
GGTTTTAAGG__CCCCGGAAGTTTCTCC
5._NA_26
____TT__________________CTCC
6._NA_26
____TT__________________CTCC
7._NA_26
____TT__________________CTCC
8._NA_26
____TT__________________CTCC
9._NA_26
____TT__________________CTCC
10._RUQ_1230
____TT__________________CTCC
11._RUQ_1230
GGTT____GG____________TTCT__
12._RUQ_1230
__TT__AA________________CT__
13._RUQ_1230
________GG__________________
14._NA_26
____TT__________________CTCC
15._RUQ_1230
CC__AA__GGAAGG__GGAAACAAAGGG
16._MITC-000034
CC__AA__GGAAGG__GGAAACAAAGGG
 5758596061626364656667686970
_Input profile
TTGGCGCCTTAAGGGGACAGGGGGGGTT
1._GC-04-021-2-03
TTGGCGCCTTAAGGGGACAGGGGGGGTT
2._GC-04-021-2-03
TTGGCGCCTTAAGGGGACAGGGGGGGTT
3._GC-04-021-2-03
TTGGCGCCTTAAGGGGACAGGGGGGGTT
4._GC-04-021-2-03
TTGGCGCCTTAAGGGGACAGGGGGGGTT
5._NA_26
____CG__TTAAGG__ACAGGGGG____
6._NA_26
____CG__TTAAGG__ACAGGGGG____
7._NA_26
____CG__TTAAGG__ACAGGGGG____
8._NA_26
____CG__TTAAGG__ACAGGGGG____
9._NA_26
____CG__TTAAGG__ACAGGGGG____
10._RUQ_1230
____CG__TTAAGG__ACAGGGGG____
11._RUQ_1230
TT__CGCCTTAA__GGACAGGGGGGG__
12._RUQ_1230
____CGCC__AA__GGACAG________
13._RUQ_1230
__GG____________ACAG__GGGG__
14._NA_26
____GG__TTACCG__CCAGGGGG____
15._RUQ_1230
AAGGCGGGAAAAGGGGACAGCCCCGG__
16._MITC-000034
AAGGCGGGAAAAGGGGACAGCCCCGG__
 7172737475767778798081828384
_Input profile
CGAACTACAACCACAACCCGCCAACCCC
1._GC-04-021-2-03
CGAACTACAACCACAACCCGCCAACCCC
2._GC-04-021-2-03
CGAACTACAACCACAACCCGCCAACCCC
3._GC-04-021-2-03
CGAACTACAACCACAACCCGCCAACCCC
4._GC-04-021-2-03
CGAACTACAACCACAACCCGCCAACCCC
5._NA_26
__AACT__________CCCG______CC
6._NA_26
__AACT__________CCCG______CC
7._NA_26
__AACT__________CCCG______CC
8._NA_26
__AACT__________CCCG______CC
9._NA_26
__AACT__________CCCG______CC
10._RUQ_1230
__AACT__________CCCG______CC
11._RUQ_1230
________________CCCG____CCCC
12._RUQ_1230
CG________________CG________
13._RUQ_1230
__AA____________CCCG____CC__
14._NA_26
__AACC__________ACCG______CC
15._RUQ_1230
____AGACAACCAC__CCCGGGAACCGG
16._MITC-000034
____AGACAACCAC__CCCGGGAACCGG
 85868788899091929394    
_Input profile
CTCCCTAACCCTTTTTATGGX_XX_XX_XX_X
1._GC-04-021-2-03
CTCCCTAACCCTTTTTATGGX_XX_XX_XX_X
2._GC-04-021-2-03
CTCCCTAACCCTTTTTATGGX_XX_XX_XX_X
3._GC-04-021-2-03
CTCCCTAACCCTTTTTATGGX_XX_XX_XX_X
4._GC-04-021-2-03
CTCCCTAACCCTTTTTATGGX_XX_XX_XX_X
5._NA_26
CTCC__AA__CTTTTT____X_XX_XX_XX_X
6._NA_26
CTCC__AA__CTTTTT____X_XX_XX_XX_X
7._NA_26
CTCC__AA__CTTTTT____X_XX_XX_XX_X
8._NA_26
CTCC__AA__CTTTTT____X_XX_XX_XX_X
9._NA_26
CTCC__AA__CTTTTT____X_XX_XX_XX_X
10._RUQ_1230
CTCC__AA__CTTTTT____X_XX_XX_XX_X
11._RUQ_1230
______AACCCTTT______X_XX_XX_XX_X
12._RUQ_1230
CT__________________X_XX_XX_XX_X
13._RUQ_1230
__CC____CC__TT______X_XX_XX_XX_X
14._NA_26
TTCC__AA__CTGTCT____X_XX_XX_XX_X
15._RUQ_1230
AG__AG____AGAAAAATGGX_XX_XX_XX_X
16._MITC-000034
AG__AG____AGAAAAATGGX_XX_XX_XX_X

Input profile: NA_26 GC-04-021-2-03

 
Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: 4 > FP4
 Mars, 2018

1._NA_26 GC-04-021-2-03

identical
94 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 8
Notes: 8 > FP3
 Mars, 2018

2._NA_26 GC-04-021-2-03

identical
94 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 7
Notes: 7 > FP2
 Mars, 2018

3._NA_26 GC-04-021-2-03

identical
94 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 6
Notes: 6 > FP1
 Mars, 2018

4._NA_26 GC-04-021-2-03

identical
93 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2
 Mars, 2018

5._NA_26

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 4203 8 > FP
 Dapeng Zhang, 2016

6._NA_26

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 4203 7 > FP
 Dapeng Zhang, 2016

7._NA_26

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 4203 6 > FP
 Dapeng Zhang, 2016

8._NA_26

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 4203 4 > FP
 Dapeng Zhang, 2016

9._NA_26

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 4203 2
 Dapeng Zhang, 2016
Population Assignment: 
 Dapeng Zhang, 2016

10._NA_26 RUQ_1230

98.8 %
40 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2016

11._NA_26 RUQ_1230

97.6 %
42 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

12._NA_26 RUQ_1230

92 %
25 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
Location: GBR207
 Jocelyn De Wever et al., 2019

13._NA_26 RUQ_1230

90.5 %
21 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Lambert Motilal, 2023

14._NA_26

72.5 %
40 shared markers

International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: 5B E352 T5
 Dapeng Zhang, 2016

15._NA_26 RUQ_1230

52.5 %
80 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
Notes: Reading_Collection
 Mars, 2018

16._NA_26 MITC-000034

52.5 %
80 shared markers

USDA-SHRS, United States of America
 Mars, 2018

 


  Key to SNP Markers

1TcSNP1075 2TcSNP1350 3TcSNP534 4TcSNP591 5TcSNP42
6TcSNP418 7TcSNP702 8TcSNP1096 9TcSNP1060 10TcSNP1165
11TcSNP429 12TcSNP75 13TcSNP891 14TcSNP122 15TcSNP316
16TcSNP521 17TcSNP1062 18TcSNP836 19TcSNP878 20TcSNP929
21TcSNP413 22TcSNP653 23TcSNP1149 24TcSNP174 25TcSNP32
26TcSNP372 27TcSNP448 28TcSNP872 29TcSNP953 30TcSNP1034
31TcSNP1175 32TcSNP1111 33TcSNP577 34TcSNP90 35TcSNP998
36TcSNP150 37TcSNP28 38TcSNP751 39TcSNP1484 40TcSNP602
41TcSNP561 42TcSNP894 43TcSNP1063 44TcSNP1126 45TcSNP1270
46TcSNP606 47TcSNP329 48TcSNP689 49TcSNP944 50TcSNP1242
51TcSNP1383 52TcSNP547 53TcSNP776 54TcSNP1309 55TcSNP151
56TcSNP1520 57TcSNP799 58TcSNP899 59TcSNP226 60TcSNP1439
61TcSNP1442 62TcSNP193 63TcSNP25 64TcSNP364 65TcSNP144
66TcSNP230 67TcSNP560 68TcSNP723 69TcSNP731 70TcSNP701
71TcSNP1041 72TcSNP645 73TcSNP917 74Tcm003s01336581 75Tcm003s07402719
76Tcm001s00947643 77Tcm006s26664133 78Tcm002s20575712 79TcSNP529 80TcSNP1458
81TcSNP60 82TcSNP430 83TcSNP823 84TcSNP619 85TcSNP994
86TcSNP1144 87TcSNP1156 88TcSNP469 89TcSNP999 90TcSNP242
91TcSNP1253 92TcSNP1414 93TcSNP154 94TcSNP240