SNP Profiles of NA 26   View Data

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 Key

 1 2 3 4 5 6 7 8 9 10 11 12 13 14
_Input profile
AACCCTACGGGGCCCCCTCCGGTTCCTT
1._NA_26___
AACCCTACGGGGCCCCCTCCGGTTCCTT
2._NA_26___
AACCCTACGGGGCCCCCTCCGGTTCCTT
3._NA_26___
AACCCTACGGGGCCCCCTCCGGTTCCTT
4._NA_26___
AACCCTACGGGGCCCCCTCCGGTTCCTT
5._NA_26___
AACCCTAC________CTCCGG__CC__
6._NA_26___
AACCCTAC________CTCCGG__CC__
7._NA_26___
AACCCTAC________CTCCGG__CC__
8._NA_26___
AACCCTAC________CTCCGG__CC__
9._NA_26___
AACCCTAC________CTCCGG__CC__
10._NA_26___
AACCCTAC________CTCCGG__CC__
11._NA_26___
____CTAC____TT__CT____TTCC__
12._NA_26___
______AC________CT______CC__
13._NA_26___
______AC____TT______________
14._NA_26___
ATCCCCAC________CCCTAG__TT__
15._NA_26___
AACC__ACGGGG__GGAG__GGAAGGAA
16._NA_26___
AACC__ACGGGG__GGAG__GGAAGGAA
 15 16 17 18 19 20 21 22 23 24 25 26 27 28
_Input profile
AAAAAGGGCCGGCTAATTGGTTATCCCC
1._NA_26___
AAAAAGGGCCGGCTAATTGGTTATCCCC
2._NA_26___
AAAAAGGGCCGGCTAATTGGTTATCCCC
3._NA_26___
AAAAAGGGCCGGCTAATTGGTTATCCCC
4._NA_26___
AAAAAGGGCCGGCTAATTGGTTATCCCC
5._NA_26___
____AG____GG________TTAT__CC
6._NA_26___
____AG____GG________TTAT__CC
7._NA_26___
____AG____GG________TTAT__CC
8._NA_26___
____AG____GG________TTAT__CC
9._NA_26___
____AG____GG________TTAT__CC
10._NA_26___
____AG____GG________TTAT__CC
11._NA_26___
________CC________GG__ATCCCC
12._NA_26___
________GG__CT____GG__ATCCGG
13._NA_26___
____AGTT__________________CC
14._NA_26___
____GG____GG________ATAT__CC
15._NA_26___
TTAAAGCC__GGAGAAAAGGTTATGGGG
16._NA_26___
TTAAAGCC__GGAGAAAAGGTTATGGGG
 29 30 31 32 33 34 35 36 37 38 39 40 41 42
_Input profile
AATTGTGGGGCCAGGGGGTTAACCGGCC
1._NA_26___
AATTGTGGGGCCAGGGGGTTAACCGGCC
2._NA_26___
AATTGTGGGGCCAGGGGGTTAACCGGCC
3._NA_26___
AATTGTGGGGCCAGGGGGTTAACCGGCC
4._NA_26___
AATTGTGGGGCCAGGGGGTTAACCGGCC
5._NA_26___
AA______GG__AGGG____AA______
6._NA_26___
AA______GG__AGGG____AA______
7._NA_26___
AA______GG__AGGG____AA______
8._NA_26___
AA______GG__AGGG____AA______
9._NA_26___
AA______GG__AGGG____AA______
10._NA_26___
AA______GG__AGGG____AG______
11._NA_26___
______GGGGCCAGGG____AACC____
12._NA_26___
______GGGG________TT__CC____
13._NA_26___
________GG__AG________CC____
14._NA_26___
AA______GG__AATT____AG______
15._NA_26___
AAAAACGGGGCCAGCCCCAAAAGGGGGG
16._NA_26___
AAAAACGGGGCCAGCCCCAAAAGGGGGG
 43 44 45 46 47 48 49 50 51 52 53 54 55 56
_Input profile
GGTTTTAAGGAACCCCGGAAGTTTCTCC
1._NA_26___
GGTTTTAAGGAACCCCGGAAGTTTCTCC
2._NA_26___
GGTTTTAAGGAACCCCGGAAGTTTCTCC
3._NA_26___
GGTTTTAAGGAACCCCGGAAGTTTCTCC
4._NA_26___
GGTTTTAAGG__CCCCGGAAGTTTCTCC
5._NA_26___
____TT__________________CTCC
6._NA_26___
____TT__________________CTCC
7._NA_26___
____TT__________________CTCC
8._NA_26___
____TT__________________CTCC
9._NA_26___
____TT__________________CTCC
10._NA_26___
____TT__________________CTCC
11._NA_26___
GGTT____GG____________TTCT__
12._NA_26___
__TT__AA________________CT__
13._NA_26___
________GG__________________
14._NA_26___
____TT__________________CTCC
15._NA_26___
CC__AA__GGAAGG__GGAAACAAAGGG
16._NA_26___
CC__AA__GGAAGG__GGAAACAAAGGG
 57 58 59 60 61 62 63 64 65 66 67 68 69 70
_Input profile
TTGGCGCCTTAAGGGGACAGGGGGGGTT
1._NA_26___
TTGGCGCCTTAAGGGGACAGGGGGGGTT
2._NA_26___
TTGGCGCCTTAAGGGGACAGGGGGGGTT
3._NA_26___
TTGGCGCCTTAAGGGGACAGGGGGGGTT
4._NA_26___
TTGGCGCCTTAAGGGGACAGGGGGGGTT
5._NA_26___
____CG__TTAAGG__ACAGGGGG____
6._NA_26___
____CG__TTAAGG__ACAGGGGG____
7._NA_26___
____CG__TTAAGG__ACAGGGGG____
8._NA_26___
____CG__TTAAGG__ACAGGGGG____
9._NA_26___
____CG__TTAAGG__ACAGGGGG____
10._NA_26___
____CG__TTAAGG__ACAGGGGG____
11._NA_26___
TT__CGCCTTAA__GGACAGGGGGGG__
12._NA_26___
____CGCC__AA__GGACAG________
13._NA_26___
__GG____________ACAG__GGGG__
14._NA_26___
____GG__TTACCG__CCAGGGGG____
15._NA_26___
AAGGCGGGAAAAGGGGACAGCCCCGG__
16._NA_26___
AAGGCGGGAAAAGGGGACAGCCCCGG__
 71 72 73 74 75 76 77 78 79 80 81 82 83 84
_Input profile
CGAACTACAACCACAACCCGCCAACCCC
1._NA_26___
CGAACTACAACCACAACCCGCCAACCCC
2._NA_26___
CGAACTACAACCACAACCCGCCAACCCC
3._NA_26___
CGAACTACAACCACAACCCGCCAACCCC
4._NA_26___
CGAACTACAACCACAACCCGCCAACCCC
5._NA_26___
__AACT__________CCCG______CC
6._NA_26___
__AACT__________CCCG______CC
7._NA_26___
__AACT__________CCCG______CC
8._NA_26___
__AACT__________CCCG______CC
9._NA_26___
__AACT__________CCCG______CC
10._NA_26___
__AACT__________CCCG______CC
11._NA_26___
________________CCCG____CCCC
12._NA_26___
CG________________CG________
13._NA_26___
__AA____________CCCG____CC__
14._NA_26___
__AACC__________ACCG______CC
15._NA_26___
____AGACAACCAC__CCCGGGAACCGG
16._NA_26___
____AGACAACCAC__CCCGGGAACCGG
 85 86 87 88 89 90 91 92 93 94     
_Input profile
CTCCCTAACCCTTTTTATGGX_XX_XX_XX_X
1._NA_26___
CTCCCTAACCCTTTTTATGGX_XX_XX_XX_X
2._NA_26___
CTCCCTAACCCTTTTTATGGX_XX_XX_XX_X
3._NA_26___
CTCCCTAACCCTTTTTATGGX_XX_XX_XX_X
4._NA_26___
CTCCCTAACCCTTTTTATGGX_XX_XX_XX_X
5._NA_26___
CTCC__AA__CTTTTT____X_XX_XX_XX_X
6._NA_26___
CTCC__AA__CTTTTT____X_XX_XX_XX_X
7._NA_26___
CTCC__AA__CTTTTT____X_XX_XX_XX_X
8._NA_26___
CTCC__AA__CTTTTT____X_XX_XX_XX_X
9._NA_26___
CTCC__AA__CTTTTT____X_XX_XX_XX_X
10._NA_26___
CTCC__AA__CTTTTT____X_XX_XX_XX_X
11._NA_26___
______AACCCTTT______X_XX_XX_XX_X
12._NA_26___
CT__________________X_XX_XX_XX_X
13._NA_26___
__CC____CC__TT______X_XX_XX_XX_X
14._NA_26___
TTCC__AA__CTGTCT____X_XX_XX_XX_X
15._NA_26___
AG__AG____AGAAAAATGGX_XX_XX_XX_X
16._NA_26___
AG__AG____AGAAAAATGGX_XX_XX_XX_X

Input profile: NA_26 GC-04-021-2-03

 
Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: 4 > FP4
 Mars, 2018

1._NA_26 GC-04-021-2-03

identical
94 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 8
Notes: 8 > FP3
 Mars, 2018

2._NA_26 GC-04-021-2-03

identical
94 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 7
Notes: 7 > FP2
 Mars, 2018

3._NA_26 GC-04-021-2-03

identical
94 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 6
Notes: 6 > FP1
 Mars, 2018

4._NA_26 GC-04-021-2-03

identical
93 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2
 Mars, 2018

5._NA_26

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 4203 8 > FP
 Dapeng Zhang, 2016

6._NA_26

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 4203 7 > FP
 Dapeng Zhang, 2016

7._NA_26

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 4203 6 > FP
 Dapeng Zhang, 2016

8._NA_26

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 4203 4 > FP
 Dapeng Zhang, 2016

9._NA_26

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 4203 2
 Dapeng Zhang, 2016

10._NA_26 RUQ_1230

98.8 %
40 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2016

11._NA_26 RUQ_1230

97.6 %
42 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

12._NA_26 RUQ_1230

92 %
25 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
Location: GBR207
 Jocelyn De Wever et al., 2019

13._NA_26 RUQ_1230

90.5 %
21 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Lambert Motilal, 2023
Population Assignment: 

14._NA_26

72.5 %
40 shared markers

International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: 5B E352 T5
 Dapeng Zhang, 2016

15._NA_26 RUQ_1230

52.5 %
80 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
Notes: Reading_Collection
 Mars, 2018

16._NA_26 MITC-000034

52.5 %
80 shared markers

USDA-SHRS, United States of America
 Mars, 2018

 


  Key to SNP Markers

1TcSNP1075 2TcSNP1350 3TcSNP534 4TcSNP591 5TcSNP42
6TcSNP418 7TcSNP702 8TcSNP1096 9TcSNP1060 10TcSNP1165
11TcSNP429 12TcSNP75 13TcSNP891 14TcSNP122 15TcSNP316
16TcSNP521 17TcSNP1062 18TcSNP836 19TcSNP878 20TcSNP929
21TcSNP413 22TcSNP653 23TcSNP1149 24TcSNP174 25TcSNP32
26TcSNP372 27TcSNP448 28TcSNP872 29TcSNP953 30TcSNP1034
31TcSNP1175 32TcSNP1111 33TcSNP577 34TcSNP90 35TcSNP998
36TcSNP150 37TcSNP28 38TcSNP751 39TcSNP1484 40TcSNP602
41TcSNP561 42TcSNP894 43TcSNP1063 44TcSNP1126 45TcSNP1270
46TcSNP606 47TcSNP329 48TcSNP689 49TcSNP944 50TcSNP1242
51TcSNP1383 52TcSNP547 53TcSNP776 54TcSNP1309 55TcSNP151
56TcSNP1520 57TcSNP799 58TcSNP899 59TcSNP226 60TcSNP1439
61TcSNP1442 62TcSNP193 63TcSNP25 64TcSNP364 65TcSNP144
66TcSNP230 67TcSNP560 68TcSNP723 69TcSNP731 70TcSNP701
71TcSNP1041 72TcSNP645 73TcSNP917 74Tcm003s01336581 75Tcm003s07402719
76Tcm001s00947643 77Tcm006s26664133 78Tcm002s20575712 79TcSNP529 80TcSNP1458
81TcSNP60 82TcSNP430 83TcSNP823 84TcSNP619 85TcSNP994
86TcSNP1144 87TcSNP1156 88TcSNP469 89TcSNP999 90TcSNP242
91TcSNP1253 92TcSNP1414 93TcSNP154 94TcSNP240