SNP Profiles of NA-26   View Data

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 Key

 1234567891011121314
_Input profile
AACCCTACGGGGCCCCCTCCGGTTCCTT
1._GC-04-021-2-03
AACCCTACGGGGCCCCCTCCGGTTCCTT
2._GC-04-021-2-03
AACCCTACGGGGCCCCCTCCGGTTCCTT
3._GC-04-021-2-03
AACCCTACGGGGCCCCCTCCGGTTCCTT
4._GC-04-021-2-03
AACCCTACGGGGCCCCCTCCGGTTCCTT
5._NA_26
AACCCTAC________CTCCGG__CC__
6._NA_26
AACCCTAC________CTCCGG__CC__
7._NA_26
AACCCTAC________CTCCGG__CC__
8._NA_26
AACCCTAC________CTCCGG__CC__
9._NA_26
AACCCTAC________CTCCGG__CC__
10._RUQ_1230
AACCCTAC________CTCCGG__CC__
11._RUQ_1230
____CTAC____TT__CT____TTCC__
12._RUQ_1230
______AC________CT______CC__
13._RUQ_1230
______AC____TT______________
14._NA_26
ATCCCCAC________CCCTAG__TT__
15._RUQ_1230
AACC__ACGGGG__GGAG__GGAAGGAA
16._MITC-000034
AACC__ACGGGG__GGAG__GGAAGGAA
 1516171819202122232425262728
_Input profile
AAAAAGGGCCGGCTAATTGGTTATCCCC
1._GC-04-021-2-03
AAAAAGGGCCGGCTAATTGGTTATCCCC
2._GC-04-021-2-03
AAAAAGGGCCGGCTAATTGGTTATCCCC
3._GC-04-021-2-03
AAAAAGGGCCGGCTAATTGGTTATCCCC
4._GC-04-021-2-03
AAAAAGGGCCGGCTAATTGGTTATCCCC
5._NA_26
____AG____GG________TTAT__CC
6._NA_26
____AG____GG________TTAT__CC
7._NA_26
____AG____GG________TTAT__CC
8._NA_26
____AG____GG________TTAT__CC
9._NA_26
____AG____GG________TTAT__CC
10._RUQ_1230
____AG____GG________TTAT__CC
11._RUQ_1230
________CC________GG__ATCCCC
12._RUQ_1230
________GG__CT____GG__ATCCGG
13._RUQ_1230
____AGTT__________________CC
14._NA_26
____GG____GG________ATAT__CC
15._RUQ_1230
TTAAAGCC__GGAGAAAAGGTTATGGGG
16._MITC-000034
TTAAAGCC__GGAGAAAAGGTTATGGGG
 2930313233343536373839404142
_Input profile
AATTGTGGGGCCAGGGGGTTAACCGGCC
1._GC-04-021-2-03
AATTGTGGGGCCAGGGGGTTAACCGGCC
2._GC-04-021-2-03
AATTGTGGGGCCAGGGGGTTAACCGGCC
3._GC-04-021-2-03
AATTGTGGGGCCAGGGGGTTAACCGGCC
4._GC-04-021-2-03
AATTGTGGGGCCAGGGGGTTAACCGGCC
5._NA_26
AA______GG__AGGG____AA______
6._NA_26
AA______GG__AGGG____AA______
7._NA_26
AA______GG__AGGG____AA______
8._NA_26
AA______GG__AGGG____AA______
9._NA_26
AA______GG__AGGG____AA______
10._RUQ_1230
AA______GG__AGGG____AG______
11._RUQ_1230
______GGGGCCAGGG____AACC____
12._RUQ_1230
______GGGG________TT__CC____
13._RUQ_1230
________GG__AG________CC____
14._NA_26
AA______GG__AATT____AG______
15._RUQ_1230
AAAAACGGGGCCAGCCCCAAAAGGGGGG
16._MITC-000034
AAAAACGGGGCCAGCCCCAAAAGGGGGG
 4344454647484950515253545556
_Input profile
GGTTTTAAGGCCCCGGAAGTTTCTCCTT
1._GC-04-021-2-03
GGTTTTAAGGCCCCGGAAGTTTCTCCTT
2._GC-04-021-2-03
GGTTTTAAGGCCCCGGAAGTTTCTCCTT
3._GC-04-021-2-03
GGTTTTAAGGCCCCGGAAGTTTCTCCTT
4._GC-04-021-2-03
GGTTTTAAGGCCCCGGAAGTTTCTCCTT
5._NA_26
____TT________________CTCC__
6._NA_26
____TT________________CTCC__
7._NA_26
____TT________________CTCC__
8._NA_26
____TT________________CTCC__
9._NA_26
____TT________________CTCC__
10._RUQ_1230
____TT________________CTCC__
11._RUQ_1230
GGTT____GG__________TTCT__TT
12._RUQ_1230
__TT__AA______________CT____
13._RUQ_1230
________GG__________________
14._NA_26
____TT________________CTCC__
15._RUQ_1230
CC__AA__GGGG__GGAAACAAAGGGAA
16._MITC-000034
CC__AA__GGGG__GGAAACAAAGGGAA
 5758596061626364656667686970
_Input profile
GGCGCCTTAAGGGGACAGGGGGGGTTCG
1._GC-04-021-2-03
GGCGCCTTAAGGGGACAGGGGGGGTTCG
2._GC-04-021-2-03
GGCGCCTTAAGGGGACAGGGGGGGTTCG
3._GC-04-021-2-03
GGCGCCTTAAGGGGACAGGGGGGGTTCG
4._GC-04-021-2-03
GGCGCCTTAAGGGGACAGGGGGGGTTCG
5._NA_26
__CG__TTAAGG__ACAGGGGG______
6._NA_26
__CG__TTAAGG__ACAGGGGG______
7._NA_26
__CG__TTAAGG__ACAGGGGG______
8._NA_26
__CG__TTAAGG__ACAGGGGG______
9._NA_26
__CG__TTAAGG__ACAGGGGG______
10._RUQ_1230
__CG__TTAAGG__ACAGGGGG______
11._RUQ_1230
__CGCCTTAA__GGACAGGGGGGG____
12._RUQ_1230
__CGCC__AA__GGACAG________CG
13._RUQ_1230
GG____________ACAG__GGGG____
14._NA_26
__GG__TTACCG__CCAGGGGG______
15._RUQ_1230
GGCGGGAAAAGGGGACAGCCCCGG____
16._MITC-000034
GGCGGGAAAAGGGGACAGCCCCGG____
 7172737475767778798081828384
_Input profile
AACTACAACCACAACCCGCCAACCCCCT
1._GC-04-021-2-03
AACTACAACCACAACCCGCCAACCCCCT
2._GC-04-021-2-03
AACTACAACCACAACCCGCCAACCCCCT
3._GC-04-021-2-03
AACTACAACCACAACCCGCCAACCCCCT
4._GC-04-021-2-03
AACTACAACCACAACCCGCCAACCCCCT
5._NA_26
AACT__________CCCG______CCCT
6._NA_26
AACT__________CCCG______CCCT
7._NA_26
AACT__________CCCG______CCCT
8._NA_26
AACT__________CCCG______CCCT
9._NA_26
AACT__________CCCG______CCCT
10._RUQ_1230
AACT__________CCCG______CCCT
11._RUQ_1230
______________CCCG____CCCC__
12._RUQ_1230
________________CG________CT
13._RUQ_1230
AA____________CCCG____CC____
14._NA_26
AACC__________ACCG______CCTT
15._RUQ_1230
__AGACAACCAC__CCCGGGAACCGGAG
16._MITC-000034
__AGACAACCAC__CCCGGGAACCGGAG
 858687888990919293     
_Input profile
CCCTAACCCTTTTTATGGX_XX_XX_XX_XX_X
1._GC-04-021-2-03
CCCTAACCCTTTTTATGGX_XX_XX_XX_XX_X
2._GC-04-021-2-03
CCCTAACCCTTTTTATGGX_XX_XX_XX_XX_X
3._GC-04-021-2-03
CCCTAACCCTTTTTATGGX_XX_XX_XX_XX_X
4._GC-04-021-2-03
CCCTAACCCTTTTTATGGX_XX_XX_XX_XX_X
5._NA_26
CC__AA__CTTTTT____X_XX_XX_XX_XX_X
6._NA_26
CC__AA__CTTTTT____X_XX_XX_XX_XX_X
7._NA_26
CC__AA__CTTTTT____X_XX_XX_XX_XX_X
8._NA_26
CC__AA__CTTTTT____X_XX_XX_XX_XX_X
9._NA_26
CC__AA__CTTTTT____X_XX_XX_XX_XX_X
10._RUQ_1230
CC__AA__CTTTTT____X_XX_XX_XX_XX_X
11._RUQ_1230
____AACCCTTT______X_XX_XX_XX_XX_X
12._RUQ_1230
__________________X_XX_XX_XX_XX_X
13._RUQ_1230
CC____CC__TT______X_XX_XX_XX_XX_X
14._NA_26
CC__AA__CTGTCT____X_XX_XX_XX_XX_X
15._RUQ_1230
__AG____AGAAAAATGGX_XX_XX_XX_XX_X
16._MITC-000034
__AG____AGAAAAATGGX_XX_XX_XX_XX_X

Input profile: NA_26 GC-04-021-2-03

 
Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2
 Mars, 2018

1._NA_26 GC-04-021-2-03

identical
93 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 8
Notes: 8 > FP3
 Mars, 2018

2._NA_26 GC-04-021-2-03

identical
93 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 7
Notes: 7 > FP2
 Mars, 2018

3._NA_26 GC-04-021-2-03

identical
93 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 6
Notes: 6 > FP1
 Mars, 2018

4._NA_26 GC-04-021-2-03

identical
93 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: 4 > FP4
 Mars, 2018

5._NA_26

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 4203 8 > FP
 Dapeng Zhang, 2016

6._NA_26

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 4203 7 > FP
 Dapeng Zhang, 2016

7._NA_26

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 4203 6 > FP
 Dapeng Zhang, 2016

8._NA_26

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 4203 4 > FP
 Dapeng Zhang, 2016

9._NA_26

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 4203 2
 Dapeng Zhang, 2016
Population Assignment: 
 Dapeng Zhang, 2016

10._NA_26 RUQ_1230

98.8 %
40 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2016

11._NA_26 RUQ_1230

97.6 %
42 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

12._NA_26 RUQ_1230

92 %
25 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
Location: GBR207
 Jocelyn De Wever et al., 2019

13._NA_26 RUQ_1230

90.5 %
21 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Lambert Motilal, 2023

14._NA_26

72.5 %
40 shared markers

International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: 5B E352 T5
 Dapeng Zhang, 2016

15._NA_26 RUQ_1230

51.9 %
79 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
Notes: Reading_Collection
 Mars, 2018

16._NA_26 MITC-000034

51.9 %
79 shared markers

USDA-SHRS, United States of America
 Mars, 2018

 


  Key to SNP Markers

1TcSNP1075 2TcSNP1350 3TcSNP534 4TcSNP591 5TcSNP42
6TcSNP418 7TcSNP702 8TcSNP1096 9TcSNP1060 10TcSNP1165
11TcSNP429 12TcSNP75 13TcSNP891 14TcSNP122 15TcSNP316
16TcSNP521 17TcSNP1062 18TcSNP836 19TcSNP878 20TcSNP929
21TcSNP413 22TcSNP653 23TcSNP1149 24TcSNP174 25TcSNP32
26TcSNP372 27TcSNP448 28TcSNP872 29TcSNP953 30TcSNP1034
31TcSNP1175 32TcSNP1111 33TcSNP577 34TcSNP90 35TcSNP998
36TcSNP150 37TcSNP28 38TcSNP751 39TcSNP1484 40TcSNP602
41TcSNP561 42TcSNP894 43TcSNP1063 44TcSNP1126 45TcSNP1270
46TcSNP606 47TcSNP329 48TcSNP944 49TcSNP1242 50TcSNP1383
51TcSNP547 52TcSNP776 53TcSNP1309 54TcSNP151 55TcSNP1520
56TcSNP799 57TcSNP899 58TcSNP226 59TcSNP1439 60TcSNP1442
61TcSNP193 62TcSNP25 63TcSNP364 64TcSNP144 65TcSNP230
66TcSNP560 67TcSNP723 68TcSNP731 69TcSNP701 70TcSNP1041
71TcSNP645 72TcSNP917 73Tcm003s01336581 74Tcm003s07402719 75Tcm001s00947643
76Tcm006s26664133 77Tcm002s20575712 78TcSNP529 79TcSNP1458 80TcSNP60
81TcSNP430 82TcSNP823 83TcSNP619 84TcSNP994 85TcSNP1144
86TcSNP1156 87TcSNP469 88TcSNP999 89TcSNP242 90TcSNP1253
91TcSNP1414 92TcSNP154 93TcSNP240