SNP Profiles of EET-272   View Data

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 Key

 1234567891011121314
_Input profile
AAAACTAAGGGGCCCCCTCCGGTTCTTT
1._GC-03-032-3-11
AAAACTAAGGGGCCCCCTCCGGTTCTTT
2._GC-03-032-3-11
AAAACTAAGGGGCCCCCTCCGGTTCTTT
3._GC-03-032-3-11
AAAACTAAGGGGCCCCCTCCGGTTCTTT
4._GC-03-032-3-11
AAAACTAAGGGGCCCCCTCCGGTTCTTT
5._GC-03-032-3-11
AAAACTAAGGGGCCCCCTCCGGTTCTTT
6._GC-03-032-3-11
AAAACTAAGGGGCCCCCTCCGGTTCTTT
7._GC-03-032-3-11
AAAACTAAGGGGCCCCCTCCGGTTCTTT
8._EET_272_[ECU]
AAAACTAA________CTCCGG__CT__
9._EET_272_[ECU]
AAAACTAA________CTCCGG__CT__
10._EET_272_[ECU]
AAAACTAA________CTCCGG__CT__
11._EET_272_[ECU]
AAAACTAA________CTCCGG__CT__
12._EET_272_[ECU]
AAAACTAA________CTCCGG__CT__
13._EET_272_[ECU]
AAAACTAA________CTCCGG__CT__
14._EET_272_[ECU]
AAAACTAA________CTCCGG__CT__
15._EET_272_[ECU]
AAAACTAA________CTCCGG__CT__
16._RUQ_6
____CTAA____TT__CT____TTTT__
17._EET_272_[ECU]
AAAACTAA________CT__AG__CT__
18._RUQ_6
____________TT______________
19._GC-03-032-3-11
AAACCCCCGGGGCTCCCCCCGGTTCCTT
20._GC-03-032-3-11
AAACCCCCGGGGCTCCCCCCGGTTCCTT
21._EET_272_[ECU]
AAACCCCC________CCCCGG__CC__
22._EET_272_[ECU]
AAACCCCC________CCCCGG__CC__
23._RUQ_6
AAAA__AAGGGG__GGAG__GGAAAGAA
24._MITC-000381
AAAA__AAGGGG__GGAG__GGAAAGAA
25._GC-03-32-3-11
AAAC__CCGGGG__GGGG__GGAAGGAA
 1516171819202122232425262728
_Input profile
AAAAGGGGCCGGCTAATTGGTTAACCCC
1._GC-03-032-3-11
AAAAGGGGCCGGCTAATTGGTTAACCCC
2._GC-03-032-3-11
AAAAGGGGCCGGCTAATTGGTTAACCCC
3._GC-03-032-3-11
AAAAGGGGCCGGCTAATTGGTTAACCCC
4._GC-03-032-3-11
AAAAGGGGCCGGCTAATTGGTTAACCCC
5._GC-03-032-3-11
AAAAGGGGCCGGCTAATTGGTTAACCCC
6._GC-03-032-3-11
AAAAGGGGCCGGCTAATTGGTTAACCCC
7._GC-03-032-3-11
AAAAGGGGCCGGCTAATTGGTTAACCCC
8._EET_272_[ECU]
____GG____GG________TTAA__CC
9._EET_272_[ECU]
____GG____GG________TTAA__CC
10._EET_272_[ECU]
____GG____GG________TTAA__CC
11._EET_272_[ECU]
____GG____GG________TTAA__CC
12._EET_272_[ECU]
____GG____GG________TTAA__CC
13._EET_272_[ECU]
____GG____GG________TTAA__CC
14._EET_272_[ECU]
____GG____GG________TTAA__CC
15._EET_272_[ECU]
____GG____GG________TTAA__CC
16._RUQ_6
________CC________GG__AACCCC
17._EET_272_[ECU]
__________GG________________
18._RUQ_6
____GGTT__________________CC
19._GC-03-032-3-11
AACCAGCGCCCCTTAATTGGATAACCGG
20._GC-03-032-3-11
AACCAGCGCCCCTTAATTGGATAACCGG
21._EET_272_[ECU]
____AG____CC________ATAA__GG
22._EET_272_[ECU]
____AG____CC________ATAA__GG
23._RUQ_6
TTAAGGCC__GGAGAAAAGGTTAAGGGG
24._MITC-000381
TTAAGGCC__GGAGAAAAGGTTAAGGGG
25._GC-03-32-3-11
TTCCAGCG__CCAAAGAAGGATAAGGCC
 2930313233343536373839404142
_Input profile
AATTGGGGGGCCAGGGGGTTAACCGGCC
1._GC-03-032-3-11
AATTGGGGGGCCAGGGGGTTAACCGGCC
2._GC-03-032-3-11
AATTGGGGGGCCAGGGGGTTAACCGGCC
3._GC-03-032-3-11
AATTGGGGGGCCAGGGGGTTAACCGGCC
4._GC-03-032-3-11
AATTGGGGGGCCAGGGGGTTAACCGGCC
5._GC-03-032-3-11
AATTGGGGGGCCAGGGGGTTAACCGGCC
6._GC-03-032-3-11
AATTGGGGGGCCAGGGGGTTAACCGGCC
7._GC-03-032-3-11
AATTGGGGGGCCAGGGGGTTAACCGGCC
8._EET_272_[ECU]
AA______GG__AGGG____AA______
9._EET_272_[ECU]
AA______GG__AGGG____AA______
10._EET_272_[ECU]
AA______GG__AGGG____AA______
11._EET_272_[ECU]
AA______GG__AGGG____AA______
12._EET_272_[ECU]
AA______GG__AGGG____AA______
13._EET_272_[ECU]
AA______GG__AGGG____AA______
14._EET_272_[ECU]
AA______GG__AGGG____AA______
15._EET_272_[ECU]
AA______GG__AGGG____AA______
16._RUQ_6
______GGGGCCAGGG____AACC____
17._EET_272_[ECU]
AA__________AG______AA______
18._RUQ_6
________GG__AG________CC____
19._GC-03-032-3-11
AATTGTGGCGCCAGGGGGTTGGCTAGCC
20._GC-03-032-3-11
AATTGTGGCGCCAGGGGGTTGGCTAGCC
21._EET_272_[ECU]
AA______CG__AGGG____GG______
22._EET_272_[ECU]
AA______CG__AGGG____GG______
23._RUQ_6
AAAACCGGGGCCAGCCCCAAAAGGGGGG
24._MITC-000381
AAAACCGGGGCCAGCCCCAAAAGGGGGG
25._GC-03-32-3-11
AAAAACGGCGCCAGCCCCAAGGAGAGGG
 4344454647484950515253545556
_Input profile
GGTTTTAGAGAACCACGGGGGGCTCCTT
1._GC-03-032-3-11
GGTTTTAGAGAACCACGGGGGGCTCCTT
2._GC-03-032-3-11
GGTTTTAGAGAACCACGGGGGGCTCCTT
3._GC-03-032-3-11
GGTTTTAGAGAACCACGGGGGGCTCCTT
4._GC-03-032-3-11
GGTTTTAGAGAACCACGGGGGGCTCCTT
5._GC-03-032-3-11
GGTTTTAGAGAACCACGGGGGGCTCCTT
6._GC-03-032-3-11
GGTTTTAGAGAACCACGGGGGGCTCCTT
7._GC-03-032-3-11
GGTTTTAGAGAACCACGGGGGGCTCCTT
8._EET_272_[ECU]
____TT________________CTCC__
9._EET_272_[ECU]
____TT________________CTCC__
10._EET_272_[ECU]
____TT________________CTCC__
11._EET_272_[ECU]
____TT________________CTCC__
12._EET_272_[ECU]
____TT________________CTCC__
13._EET_272_[ECU]
____TT________________CTCC__
14._EET_272_[ECU]
____TT________________CTCC__
15._EET_272_[ECU]
____TT________________CTCC__
16._RUQ_6
GGTT____AG____________CT__TT
17._EET_272_[ECU]
______________________CTCT__
18._RUQ_6
________AG__________________
19._GC-03-032-3-11
GGTTCTAAGGAACC__GGAAGGCCCTTT
20._GC-03-032-3-11
GGTTCTAAGGAACCCCGGAAGGCCCTTT
21._EET_272_[ECU]
____CT________________CCCT__
22._EET_272_[ECU]
____CT________________CCCT__
23._RUQ_6
CC__AA__AGAAGG__GGGGCCAGGGAA
24._MITC-000381
CC__AA__AGAAGG__GGGGCCAGGGAA
25._GC-03-32-3-11
CC__AG__GGAAGG__GGAACCGGAGAA
 5758596061626364656667686970
_Input profile
GGCCCCTTAAGGGGACAAGTGGGGTTCG
1._GC-03-032-3-11
GGCCCCTTAAGGGGACAAGTGGGGTTCG
2._GC-03-032-3-11
GGCCCCTTAAGGGGACAAGTGGGGTTCG
3._GC-03-032-3-11
GGCCCCTTAAGGGGACAAGTGGGGTTCG
4._GC-03-032-3-11
GGCCCCTTAAGGGGACAAGTGGGGTTCG
5._GC-03-032-3-11
GGCCCCTTAAGGGGACAAGTGGGGTTCG
6._GC-03-032-3-11
GGCCCCTTAAGGGGACAAGTGGGGTTCG
7._GC-03-032-3-11
GGCCCCTTAAGGGGACAAGTGGGGTTCG
8._EET_272_[ECU]
__CC__TTAAGG__ACAAGTGG______
9._EET_272_[ECU]
__CC__TTAAGG__ACAAGTGG______
10._EET_272_[ECU]
__CC__TTAAGG__ACAAGTGG______
11._EET_272_[ECU]
__CC__TTAAGG__ACAAGTGG______
12._EET_272_[ECU]
__CC__TTAAGG__ACAAGTGG______
13._EET_272_[ECU]
__CC__TTAAGG__ACAAGTGG______
14._EET_272_[ECU]
__CC__TTAAGG__ACAAGTGG______
15._EET_272_[ECU]
__CC__TTAAGG__ACAAGTGG______
16._RUQ_6
__CCCCTTAA__GGACAAGTGGGG____
17._EET_272_[ECU]
__CC__TTAAGG__ACAAGTGG______
18._RUQ_6
GG____________ACAA__GGGG____
19._GC-03-032-3-11
GGCCCCCCAAGGGGCCAGGTGGAGTTCC
20._GC-03-032-3-11
GGCCCCCC__GGGGCCAGGTGGAGTTCC
21._EET_272_[ECU]
__CC__CCAAGG__CCAGGTGG______
22._EET_272_[ECU]
__CC__CC__GG__CCAGGTGG______
23._RUQ_6
GGGGGGAAAAGGGGACAAACCCGG____
24._MITC-000381
GGGGGGAAAAGGGGACAAACCCGG____
25._GC-03-32-3-11
GGGGGGGGACGGGGCCAGACCCAG____
 7172737475767778798081828384
_Input profile
AACTACCCCCAACCCCCCAAACCTCTCC
1._GC-03-032-3-11
AACTACCCCCAACCCCCCAAACCTCTCC
2._GC-03-032-3-11
AACTACCCCCAACCCCCCAAACCTCTCC
3._GC-03-032-3-11
AACTACCCCCAACCCCCCAAACCTCTCC
4._GC-03-032-3-11
AACTACCCCCAACCCCCCAAACCTCTCC
5._GC-03-032-3-11
AACTACCCCCAACCCCCCAAACCTCTCC
6._GC-03-032-3-11
AACTACCCCCAACCCCCCAAACCTCTCC
7._GC-03-032-3-11
AACTACCCCCAACCCCCCAAACCTCTCC
8._EET_272_[ECU]
AACT________CCCC______CTCTCC
9._EET_272_[ECU]
AACT________CCCC______CTCTCC
10._EET_272_[ECU]
AACT________CCCC______CTCTCC
11._EET_272_[ECU]
AACT________CCCC______CTCTCC
12._EET_272_[ECU]
AACT________CCCC______CTCTCC
13._EET_272_[ECU]
AACT________CCCC______CTCTCC
14._EET_272_[ECU]
AACT________CCCC______CTCTCC
15._EET_272_[ECU]
AACT________CCCC______CTCTCC
16._RUQ_6
____________CCCC____ACCT____
17._EET_272_[ECU]
AACT__________________CTCTCT
18._RUQ_6
AA__________ACCC____AC____CC
19._GC-03-032-3-11
AGCTCCACCCAAACGGCCTTAATTCTCC
20._GC-03-032-3-11
AGCTCCACCCAAACGGCCTTAATTCTCC
21._EET_272_[ECU]
AGCT________ACGG______TTCTCC
22._EET_272_[ECU]
AGCT________ACGG______TTCTCC
23._RUQ_6
__AGACCCCC__CCGGGGAAACAGAG__
24._MITC-000381
__AGACCCCC__CCGGGGAAACAGAG__
25._GC-03-32-3-11
__AGCCACCC__ACCCGGTTAAAAAG__
 8586878889909192      
_Input profile
TTAACTCTTTTTATGGX_XX_XX_XX_XX_XX_X
1._GC-03-032-3-11
TTAACTCTTTTTATGGX_XX_XX_XX_XX_XX_X
2._GC-03-032-3-11
TTAACTCTTTTTATGGX_XX_XX_XX_XX_XX_X
3._GC-03-032-3-11
TTAACTCTTTTTATGGX_XX_XX_XX_XX_XX_X
4._GC-03-032-3-11
TTAACTCTTTTTATGGX_XX_XX_XX_XX_XX_X
5._GC-03-032-3-11
TTAACTCTTTTTATGGX_XX_XX_XX_XX_XX_X
6._GC-03-032-3-11
TTAACTCTTTTTATGGX_XX_XX_XX_XX_XX_X
7._GC-03-032-3-11
TTAACTCTTTTTATGGX_XX_XX_XX_XX_XX_X
8._EET_272_[ECU]
__AA__CTTTTT____X_XX_XX_XX_XX_XX_X
9._EET_272_[ECU]
__AA__CTTTTT____X_XX_XX_XX_XX_XX_X
10._EET_272_[ECU]
__AA__CTTTTT____X_XX_XX_XX_XX_XX_X
11._EET_272_[ECU]
__AA__CTTTTT____X_XX_XX_XX_XX_XX_X
12._EET_272_[ECU]
__AA__CTTTTT____X_XX_XX_XX_XX_XX_X
13._EET_272_[ECU]
__AA__CTTTTT____X_XX_XX_XX_XX_XX_X
14._EET_272_[ECU]
__AA__CTTTTT____X_XX_XX_XX_XX_XX_X
15._EET_272_[ECU]
__AA__CTTTTT____X_XX_XX_XX_XX_XX_X
16._RUQ_6
__AA__CTTT______X_XX_XX_XX_XX_XX_X
17._EET_272_[ECU]
__AA__CTTTTT____X_XX_XX_XX_XX_XX_X
18._RUQ_6
____CT__TT______X_XX_XX_XX_XX_XX_X
19._GC-03-032-3-11
TTAACCCCTTTTAAGGX_XX_XX_XX_XX_XX_X
20._GC-03-032-3-11
TTAACCCCTTTTAAGGX_XX_XX_XX_XX_XX_X
21._EET_272_[ECU]
__AA__CCTTTT____X_XX_XX_XX_XX_XX_X
22._EET_272_[ECU]
__AA__CCTTTT____X_XX_XX_XX_XX_XX_X
23._RUQ_6
AA____AGAAAAATGGX_XX_XX_XX_XX_XX_X
24._MITC-000381
AA____AGAAAAATGGX_XX_XX_XX_XX_XX_X
25._GC-03-32-3-11
AA____GGAAAATTGGX_XX_XX_XX_XX_XX_X

Input profile: EET_272_[ECU] GC-03-032-3-11

 
Mars Center for Cocoa Science, Brazil
Location: Tree: 13
Notes: 13
 Mars, 2018

1._EET_272_[ECU] GC-03-032-3-11

identical
92 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1 > FP1
 Mars, 2018

2._EET_272_[ECU] GC-03-032-3-11

identical
92 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2 > FP2
 Mars, 2018

3._EET_272_[ECU] GC-03-032-3-11

identical
92 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3 > FP3
 Mars, 2018

4._EET_272_[ECU] GC-03-032-3-11

identical
92 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 5
Notes: 5
 Mars, 2018

5._EET_272_[ECU] GC-03-032-3-11

identical
92 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 9
Notes: 9
 Mars, 2018

6._EET_272_[ECU] GC-03-032-3-11

identical
92 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 10
Notes: 10
 Mars, 2018

7._EET_272_[ECU] GC-03-032-3-11

identical
92 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 16
Notes: 16
 Mars, 2018

8._EET_272_[ECU]

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 3311 2 > FP
 Dapeng Zhang, 2016

9._EET_272_[ECU]

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 3311 5
 Dapeng Zhang, 2016
Population Assignment: 
 Dapeng Zhang, 2016

10._EET_272_[ECU]

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 3311 9
 Dapeng Zhang, 2016

11._EET_272_[ECU]

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 3311 10
 Dapeng Zhang, 2016

12._EET_272_[ECU]

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 3311 13
 Dapeng Zhang, 2016

13._EET_272_[ECU]

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 3311 16
 Dapeng Zhang, 2016

14._EET_272_[ECU]

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 3311 1 > FP
 Dapeng Zhang, 2016

15._EET_272_[ECU]

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 3311 3 > FP
 Dapeng Zhang, 2016

16._EET_272_[ECU] RUQ_6

96.3 %
40 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

17._EET_272_[ECU]

95 %
30 shared markers

International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: CAMPUS 3 X16 Y8
 Dapeng Zhang, 2016

18._EET_272_[ECU] RUQ_6

87.5 %
20 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Lambert Motilal, 2023

19._EET_272_[ECU] GC-03-032-3-11

73.1 %
91 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 8
Notes: 8
 Mars, 2018

20._EET_272_[ECU] GC-03-032-3-11

72.5 %
91 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 7
Notes: 7
 Mars, 2018

21._EET_272_[ECU]

65 %
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 3311 8
 Dapeng Zhang, 2016

22._EET_272_[ECU]

64.1 %
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 3311 7
 Dapeng Zhang, 2016
Population Assignment: 
 Dapeng Zhang, 2016

23._EET_272_[ECU] RUQ_6

50 %
78 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
Notes: Reading_Collection
 Mars, 2018

24._EET_272_[ECU] MITC-000381

50 %
78 shared markers

USDA-SHRS, United States of America
 Mars, 2018

25._EET_272_[ECU] GC-03-32-3-11

35.3 %
78 shared markers

Mars Center for Cocoa Science, Brazil
Location: Field: 3, Block: 3, Rep: 11, Tree: 7
Notes: MCCS_Structure_refs_above_0.9membership
 Mars, 2018

 


  Key to SNP Markers

1TcSNP1075 2TcSNP1350 3TcSNP534 4TcSNP591 5TcSNP42
6TcSNP418 7TcSNP702 8TcSNP1096 9TcSNP1060 10TcSNP1165
11TcSNP429 12TcSNP75 13TcSNP891 14TcSNP122 15TcSNP316
16TcSNP521 17TcSNP1062 18TcSNP836 19TcSNP878 20TcSNP929
21TcSNP413 22TcSNP653 23TcSNP1149 24TcSNP174 25TcSNP32
26TcSNP372 27TcSNP448 28TcSNP872 29TcSNP953 30TcSNP1034
31TcSNP1175 32TcSNP1111 33TcSNP577 34TcSNP90 35TcSNP998
36TcSNP150 37TcSNP28 38TcSNP751 39TcSNP1484 40TcSNP602
41TcSNP561 42TcSNP894 43TcSNP1063 44TcSNP1126 45TcSNP1270
46TcSNP606 47TcSNP329 48TcSNP689 49TcSNP944 50TcSNP1242
51TcSNP1383 52TcSNP547 53TcSNP776 54TcSNP151 55TcSNP1520
56TcSNP799 57TcSNP899 58TcSNP226 59TcSNP1439 60TcSNP1442
61TcSNP193 62TcSNP25 63TcSNP364 64TcSNP144 65TcSNP230
66TcSNP560 67TcSNP723 68TcSNP731 69TcSNP701 70TcSNP1041
71TcSNP645 72TcSNP917 73Tcm003s01336581 74Tcm001s00947643 75Tcm006s26664133
76Tcm002s20575712 77TcSNP529 78TcSNP1458 79TcSNP60 80TcSNP430
81TcSNP823 82TcSNP619 83TcSNP994 84TcSNP1144 85TcSNP1156
86TcSNP469 87TcSNP999 88TcSNP242 89TcSNP1253 90TcSNP1414
91TcSNP154 92TcSNP240