SNP Profiles of POUND 7 /B   View Data

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 Key

 1 2 3 4 5 6 7 8 9 10 11 12 13 14
_Input profile
AAAACTAAGGGGCCCCCTCCGGTTCTTT
1._EET_272_[ECU]___
AAAACTAAGGGGCCCCCTCCGGTTCTTT
2._EET_272_[ECU]___
AAAACTAAGGGGCCCCCTCCGGTTCTTT
3._EET_272_[ECU]___
AAAACTAAGGGGCCCCCTCCGGTTCTTT
4._EET_272_[ECU]___
AAAACTAAGGGGCCCCCTCCGGTTCTTT
5._EET_272_[ECU]___
AAAACTAAGGGGCCCCCTCCGGTTCTTT
6._EET_272_[ECU]___
AAAACTAAGGGGCCCCCTCCGGTTCTTT
7._EET_272_[ECU]___
AAAACTAAGGGGCCCCCTCCGGTTCTTT
8._EET_272_[ECU]___
AAAACTAA________CTCCGG__CT__
9._EET_272_[ECU]___
AAAACTAA________CTCCGG__CT__
10._EET_272_[ECU]___
AAAACTAA________CTCCGG__CT__
11._EET_272_[ECU]___
AAAACTAA________CTCCGG__CT__
12._EET_272_[ECU]___
AAAACTAA________CTCCGG__CT__
13._EET_272_[ECU]___
AAAACTAA________CTCCGG__CT__
14._EET_272_[ECU]___
AAAACTAA________CTCCGG__CT__
15._EET_272_[ECU]___
AAAACTAA________CTCCGG__CT__
16._EET_272_[ECU]___
____CTAA____TT__CT____TTTT__
17._EET_272_[ECU]___
AAAACTAA________CT__AG__CT__
18._EET_272_[ECU]___
____________TT______________
19._EET_272_[ECU]___
AAACCCCCGGGGCTCCCCCCGGTTCCTT
20._EET_272_[ECU]___
AAACCCCCGGGGCTCCCCCCGGTTCCTT
21._EET_272_[ECU]___
AAACCCCC________CCCCGG__CC__
22._EET_272_[ECU]___
AAACCCCC________CCCCGG__CC__
23._EET_272_[ECU]___
AAAA__AAGGGG__GGAG__GGAAAGAA
24._EET_272_[ECU]___
AAAA__AAGGGG__GGAG__GGAAAGAA
25._EET_272_[ECU]___
AAAC__CCGGGG__GGGG__GGAAGGAA
 15 16 17 18 19 20 21 22 23 24 25 26 27 28
_Input profile
AAAAGGGGCCGGCTAATTGGTTAACCCC
1._EET_272_[ECU]___
AAAAGGGGCCGGCTAATTGGTTAACCCC
2._EET_272_[ECU]___
AAAAGGGGCCGGCTAATTGGTTAACCCC
3._EET_272_[ECU]___
AAAAGGGGCCGGCTAATTGGTTAACCCC
4._EET_272_[ECU]___
AAAAGGGGCCGGCTAATTGGTTAACCCC
5._EET_272_[ECU]___
AAAAGGGGCCGGCTAATTGGTTAACCCC
6._EET_272_[ECU]___
AAAAGGGGCCGGCTAATTGGTTAACCCC
7._EET_272_[ECU]___
AAAAGGGGCCGGCTAATTGGTTAACCCC
8._EET_272_[ECU]___
____GG____GG________TTAA__CC
9._EET_272_[ECU]___
____GG____GG________TTAA__CC
10._EET_272_[ECU]___
____GG____GG________TTAA__CC
11._EET_272_[ECU]___
____GG____GG________TTAA__CC
12._EET_272_[ECU]___
____GG____GG________TTAA__CC
13._EET_272_[ECU]___
____GG____GG________TTAA__CC
14._EET_272_[ECU]___
____GG____GG________TTAA__CC
15._EET_272_[ECU]___
____GG____GG________TTAA__CC
16._EET_272_[ECU]___
________CC________GG__AACCCC
17._EET_272_[ECU]___
__________GG________________
18._EET_272_[ECU]___
____GGTT__________________CC
19._EET_272_[ECU]___
AACCAGCGCCCCTTAATTGGATAACCGG
20._EET_272_[ECU]___
AACCAGCGCCCCTTAATTGGATAACCGG
21._EET_272_[ECU]___
____AG____CC________ATAA__GG
22._EET_272_[ECU]___
____AG____CC________ATAA__GG
23._EET_272_[ECU]___
TTAAGGCC__GGAGAAAAGGTTAAGGGG
24._EET_272_[ECU]___
TTAAGGCC__GGAGAAAAGGTTAAGGGG
25._EET_272_[ECU]___
TTCCAGCG__CCAAAGAAGGATAAGGCC
 29 30 31 32 33 34 35 36 37 38 39 40 41 42
_Input profile
AATTGGGGGGCCAGGGGGTTAACCGGCC
1._EET_272_[ECU]___
AATTGGGGGGCCAGGGGGTTAACCGGCC
2._EET_272_[ECU]___
AATTGGGGGGCCAGGGGGTTAACCGGCC
3._EET_272_[ECU]___
AATTGGGGGGCCAGGGGGTTAACCGGCC
4._EET_272_[ECU]___
AATTGGGGGGCCAGGGGGTTAACCGGCC
5._EET_272_[ECU]___
AATTGGGGGGCCAGGGGGTTAACCGGCC
6._EET_272_[ECU]___
AATTGGGGGGCCAGGGGGTTAACCGGCC
7._EET_272_[ECU]___
AATTGGGGGGCCAGGGGGTTAACCGGCC
8._EET_272_[ECU]___
AA______GG__AGGG____AA______
9._EET_272_[ECU]___
AA______GG__AGGG____AA______
10._EET_272_[ECU]___
AA______GG__AGGG____AA______
11._EET_272_[ECU]___
AA______GG__AGGG____AA______
12._EET_272_[ECU]___
AA______GG__AGGG____AA______
13._EET_272_[ECU]___
AA______GG__AGGG____AA______
14._EET_272_[ECU]___
AA______GG__AGGG____AA______
15._EET_272_[ECU]___
AA______GG__AGGG____AA______
16._EET_272_[ECU]___
______GGGGCCAGGG____AACC____
17._EET_272_[ECU]___
AA__________AG______AA______
18._EET_272_[ECU]___
________GG__AG________CC____
19._EET_272_[ECU]___
AATTGTGGCGCCAGGGGGTTGGCTAGCC
20._EET_272_[ECU]___
AATTGTGGCGCCAGGGGGTTGGCTAGCC
21._EET_272_[ECU]___
AA______CG__AGGG____GG______
22._EET_272_[ECU]___
AA______CG__AGGG____GG______
23._EET_272_[ECU]___
AAAACCGGGGCCAGCCCCAAAAGGGGGG
24._EET_272_[ECU]___
AAAACCGGGGCCAGCCCCAAAAGGGGGG
25._EET_272_[ECU]___
AAAAACGGCGCCAGCCCCAAGGAGAGGG
 43 44 45 46 47 48 49 50 51 52 53 54 55 56
_Input profile
GGTTTTAGAGAACCACGGGGGGTTCTCC
1._EET_272_[ECU]___
GGTTTTAGAGAACCACGGGGGGTTCTCC
2._EET_272_[ECU]___
GGTTTTAGAGAACCACGGGGGGTTCTCC
3._EET_272_[ECU]___
GGTTTTAGAGAACCACGGGGGGTTCTCC
4._EET_272_[ECU]___
GGTTTTAGAGAACCACGGGGGGTTCTCC
5._EET_272_[ECU]___
GGTTTTAGAGAACCACGGGGGGTTCTCC
6._EET_272_[ECU]___
GGTTTTAGAGAACCACGGGGGGTTCTCC
7._EET_272_[ECU]___
GGTTTTAGAGAACCACGGGGGG__CTCC
8._EET_272_[ECU]___
____TT__________________CTCC
9._EET_272_[ECU]___
____TT__________________CTCC
10._EET_272_[ECU]___
____TT__________________CTCC
11._EET_272_[ECU]___
____TT__________________CTCC
12._EET_272_[ECU]___
____TT__________________CTCC
13._EET_272_[ECU]___
____TT__________________CTCC
14._EET_272_[ECU]___
____TT__________________CTCC
15._EET_272_[ECU]___
____TT__________________CTCC
16._EET_272_[ECU]___
GGTT____AG____________TTCT__
17._EET_272_[ECU]___
________________________CTCT
18._EET_272_[ECU]___
________AG__________________
19._EET_272_[ECU]___
GGTTCTAAGGAACC__GGAAGGTTCCCT
20._EET_272_[ECU]___
GGTTCTAAGGAACCCCGGAAGGTTCCCT
21._EET_272_[ECU]___
____CT__________________CCCT
22._EET_272_[ECU]___
____CT__________________CCCT
23._EET_272_[ECU]___
CC__AA__AGAAGG__GGGGCCAAAGGG
24._EET_272_[ECU]___
CC__AA__AGAAGG__GGGGCCAAAGGG
25._EET_272_[ECU]___
CC__AG__GGAAGG__GGAACCAAGGAG
 57 58 59 60 61 62 63 64 65 66 67 68 69 70
_Input profile
TTGGCCCCTTAAGGGGACAAGTGGGGTT
1._EET_272_[ECU]___
TTGGCCCCTTAAGGGGACAAGTGGGGTT
2._EET_272_[ECU]___
TTGGCCCCTTAAGGGGACAAGTGGGGTT
3._EET_272_[ECU]___
TTGGCCCCTTAAGGGGACAAGTGGGGTT
4._EET_272_[ECU]___
TTGGCCCCTTAAGGGGACAAGTGGGGTT
5._EET_272_[ECU]___
TTGGCCCCTTAAGGGGACAAGTGGGGTT
6._EET_272_[ECU]___
TTGGCCCCTTAAGGGGACAAGTGGGGTT
7._EET_272_[ECU]___
TTGGCCCCTTAAGGGGACAAGTGGGGTT
8._EET_272_[ECU]___
____CC__TTAAGG__ACAAGTGG____
9._EET_272_[ECU]___
____CC__TTAAGG__ACAAGTGG____
10._EET_272_[ECU]___
____CC__TTAAGG__ACAAGTGG____
11._EET_272_[ECU]___
____CC__TTAAGG__ACAAGTGG____
12._EET_272_[ECU]___
____CC__TTAAGG__ACAAGTGG____
13._EET_272_[ECU]___
____CC__TTAAGG__ACAAGTGG____
14._EET_272_[ECU]___
____CC__TTAAGG__ACAAGTGG____
15._EET_272_[ECU]___
____CC__TTAAGG__ACAAGTGG____
16._EET_272_[ECU]___
TT__CCCCTTAA__GGACAAGTGGGG__
17._EET_272_[ECU]___
____CC__TTAAGG__ACAAGTGG____
18._EET_272_[ECU]___
__GG____________ACAA__GGGG__
19._EET_272_[ECU]___
TTGGCCCCCCAAGGGGCCAGGTGGAGTT
20._EET_272_[ECU]___
TTGGCCCCCC__GGGGCCAGGTGGAGTT
21._EET_272_[ECU]___
____CC__CCAAGG__CCAGGTGG____
22._EET_272_[ECU]___
____CC__CC__GG__CCAGGTGG____
23._EET_272_[ECU]___
AAGGGGGGAAAAGGGGACAAACCCGG__
24._EET_272_[ECU]___
AAGGGGGGAAAAGGGGACAAACCCGG__
25._EET_272_[ECU]___
AAGGGGGGGGACGGGGCCAGACCCAG__
 71 72 73 74 75 76 77 78 79 80 81 82 83 84
_Input profile
CGAACTACAACCCCAACCCCCCAAACCT
1._EET_272_[ECU]___
CGAACTACAACCCCAACCCCCCAAACCT
2._EET_272_[ECU]___
CGAACTACAACCCCAACCCCCCAAACCT
3._EET_272_[ECU]___
CGAACTACAACCCCAACCCCCCAAACCT
4._EET_272_[ECU]___
CGAACTACAACCCCAACCCCCCAAACCT
5._EET_272_[ECU]___
CGAACTACAACCCCAACCCCCCAAACCT
6._EET_272_[ECU]___
CGAACTACAACCCCAACCCCCCAAACCT
7._EET_272_[ECU]___
CGAACTAC__CCCCAACCCCCCAAACCT
8._EET_272_[ECU]___
__AACT__________CCCC______CT
9._EET_272_[ECU]___
__AACT__________CCCC______CT
10._EET_272_[ECU]___
__AACT__________CCCC______CT
11._EET_272_[ECU]___
__AACT__________CCCC______CT
12._EET_272_[ECU]___
__AACT__________CCCC______CT
13._EET_272_[ECU]___
__AACT__________CCCC______CT
14._EET_272_[ECU]___
__AACT__________CCCC______CT
15._EET_272_[ECU]___
__AACT__________CCCC______CT
16._EET_272_[ECU]___
________________CCCC____ACCT
17._EET_272_[ECU]___
__AACT____________________CT
18._EET_272_[ECU]___
__AA____________ACCC____AC__
19._EET_272_[ECU]___
CCAGCTCCAGACCCAAACGGCCTTAATT
20._EET_272_[ECU]___
CCAGCTCCAGACCCAAACGGCCTTAATT
21._EET_272_[ECU]___
__AGCT__________ACGG______TT
22._EET_272_[ECU]___
__AGCT__________ACGG______TT
23._EET_272_[ECU]___
____AGACAACCCC__CCGGGGAAACAG
24._EET_272_[ECU]___
____AGACAACCCC__CCGGGGAAACAG
25._EET_272_[ECU]___
____AGCCAGACCC__ACCCGGTTAAAA
 85 86 87 88 89 90 91 92 93 94     
_Input profile
CTCCTTAACTCTTTTTATGGX_XX_XX_XX_X
1._EET_272_[ECU]___
CTCCTTAACTCTTTTTATGGX_XX_XX_XX_X
2._EET_272_[ECU]___
CTCCTTAACTCTTTTTATGGX_XX_XX_XX_X
3._EET_272_[ECU]___
CTCCTTAACTCTTTTTATGGX_XX_XX_XX_X
4._EET_272_[ECU]___
CTCCTTAACTCTTTTTATGGX_XX_XX_XX_X
5._EET_272_[ECU]___
CTCCTTAACTCTTTTTATGGX_XX_XX_XX_X
6._EET_272_[ECU]___
CTCCTTAACTCTTTTTATGGX_XX_XX_XX_X
7._EET_272_[ECU]___
CTCCTTAACTCTTTTTATGGX_XX_XX_XX_X
8._EET_272_[ECU]___
CTCC__AA__CTTTTT____X_XX_XX_XX_X
9._EET_272_[ECU]___
CTCC__AA__CTTTTT____X_XX_XX_XX_X
10._EET_272_[ECU]___
CTCC__AA__CTTTTT____X_XX_XX_XX_X
11._EET_272_[ECU]___
CTCC__AA__CTTTTT____X_XX_XX_XX_X
12._EET_272_[ECU]___
CTCC__AA__CTTTTT____X_XX_XX_XX_X
13._EET_272_[ECU]___
CTCC__AA__CTTTTT____X_XX_XX_XX_X
14._EET_272_[ECU]___
CTCC__AA__CTTTTT____X_XX_XX_XX_X
15._EET_272_[ECU]___
CTCC__AA__CTTTTT____X_XX_XX_XX_X
16._EET_272_[ECU]___
______AA__CTTT______X_XX_XX_XX_X
17._EET_272_[ECU]___
CTCT__AA__CTTTTT____X_XX_XX_XX_X
18._EET_272_[ECU]___
__CC____CT__TT______X_XX_XX_XX_X
19._EET_272_[ECU]___
CTCCTTAACCCCTTTTAAGGX_XX_XX_XX_X
20._EET_272_[ECU]___
CTCCTTAACCCCTTTTAAGGX_XX_XX_XX_X
21._EET_272_[ECU]___
CTCC__AA__CCTTTT____X_XX_XX_XX_X
22._EET_272_[ECU]___
CTCC__AA__CCTTTT____X_XX_XX_XX_X
23._EET_272_[ECU]___
AG__AA____AGAAAAATGGX_XX_XX_XX_X
24._EET_272_[ECU]___
AG__AA____AGAAAAATGGX_XX_XX_XX_X
25._EET_272_[ECU]___
AG__AA____GGAAAATTGGX_XX_XX_XX_X

Input profile: EET_272_[ECU] GC-03-032-3-11

 
Mars Center for Cocoa Science, Brazil
Location: Tree: 5
Notes: 5
 Mars, 2018

1._EET_272_[ECU] GC-03-032-3-11

identical
94 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1 > FP1
 Mars, 2018

2._EET_272_[ECU] GC-03-032-3-11

identical
94 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2 > FP2
 Mars, 2018

3._EET_272_[ECU] GC-03-032-3-11

identical
94 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3 > FP3
 Mars, 2018

4._EET_272_[ECU] GC-03-032-3-11

identical
94 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 9
Notes: 9
 Mars, 2018

5._EET_272_[ECU] GC-03-032-3-11

identical
94 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 10
Notes: 10
 Mars, 2018

6._EET_272_[ECU] GC-03-032-3-11

identical
94 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 16
Notes: 16
 Mars, 2018

7._EET_272_[ECU] GC-03-032-3-11

identical
92 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 13
Notes: 13
 Mars, 2018

8._EET_272_[ECU]

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 3311 2 > FP
 Dapeng Zhang, 2016

9._EET_272_[ECU]

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 3311 5
 Dapeng Zhang, 2016

10._EET_272_[ECU]

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 3311 9
 Dapeng Zhang, 2016

11._EET_272_[ECU]

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 3311 10
 Dapeng Zhang, 2016

12._EET_272_[ECU]

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 3311 13
 Dapeng Zhang, 2016

13._EET_272_[ECU]

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 3311 16
 Dapeng Zhang, 2016

14._EET_272_[ECU]

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 3311 1 > FP
 Dapeng Zhang, 2016

15._EET_272_[ECU]

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 3311 3 > FP
 Dapeng Zhang, 2016

16._EET_272_[ECU] RUQ_6

96.3 %
41 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

17._EET_272_[ECU]

95 %
30 shared markers

International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: CAMPUS 3 X16 Y8
 Dapeng Zhang, 2016

18._EET_272_[ECU] RUQ_6

87.5 %
20 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Lambert Motilal, 2023
Population Assignment: 

19._EET_272_[ECU] GC-03-032-3-11

73.1 %
93 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 8
Notes: 8
 Mars, 2018

20._EET_272_[ECU] GC-03-032-3-11

72.6 %
93 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 7
Notes: 7
 Mars, 2018

21._EET_272_[ECU]

65 %
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 3311 8
 Dapeng Zhang, 2016

22._EET_272_[ECU]

64.1 %
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 3311 7
 Dapeng Zhang, 2016

23._EET_272_[ECU] RUQ_6

50 %
80 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
Notes: Reading_Collection
 Mars, 2018

24._EET_272_[ECU] MITC-000381

50 %
80 shared markers

USDA-SHRS, United States of America
 Mars, 2018

25._EET_272_[ECU] GC-03-32-3-11

35 %
80 shared markers

Mars Center for Cocoa Science, Brazil
Location: Field: 3, Block: 3, Rep: 11, Tree: 7
Notes: MCCS_Structure_refs_above_0.9membership
 Mars, 2018

 


  Key to SNP Markers

1TcSNP1075 2TcSNP1350 3TcSNP534 4TcSNP591 5TcSNP42
6TcSNP418 7TcSNP702 8TcSNP1096 9TcSNP1060 10TcSNP1165
11TcSNP429 12TcSNP75 13TcSNP891 14TcSNP122 15TcSNP316
16TcSNP521 17TcSNP1062 18TcSNP836 19TcSNP878 20TcSNP929
21TcSNP413 22TcSNP653 23TcSNP1149 24TcSNP174 25TcSNP32
26TcSNP372 27TcSNP448 28TcSNP872 29TcSNP953 30TcSNP1034
31TcSNP1175 32TcSNP1111 33TcSNP577 34TcSNP90 35TcSNP998
36TcSNP150 37TcSNP28 38TcSNP751 39TcSNP1484 40TcSNP602
41TcSNP561 42TcSNP894 43TcSNP1063 44TcSNP1126 45TcSNP1270
46TcSNP606 47TcSNP329 48TcSNP689 49TcSNP944 50TcSNP1242
51TcSNP1383 52TcSNP547 53TcSNP776 54TcSNP1309 55TcSNP151
56TcSNP1520 57TcSNP799 58TcSNP899 59TcSNP226 60TcSNP1439
61TcSNP1442 62TcSNP193 63TcSNP25 64TcSNP364 65TcSNP144
66TcSNP230 67TcSNP560 68TcSNP723 69TcSNP731 70TcSNP701
71TcSNP1041 72TcSNP645 73TcSNP917 74Tcm003s01336581 75Tcm003s07402719
76Tcm001s00947643 77Tcm006s26664133 78Tcm002s20575712 79TcSNP529 80TcSNP1458
81TcSNP60 82TcSNP430 83TcSNP823 84TcSNP619 85TcSNP994
86TcSNP1144 87TcSNP1156 88TcSNP469 89TcSNP999 90TcSNP242
91TcSNP1253 92TcSNP1414 93TcSNP154 94TcSNP240