SNP Profiles of NA 33   View Data

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 Key

 1 2 3 4 5 6 7 8 9 10 11 12 13 14
_Input profile
AACCCTAAGGAGCCCCCTCCGGTTCCTT
1._IMC_14___
AACCCTAAGGAGCCCCCTCCGGTTCCTT
2._IMC_14___
AACCCTAAGGAGCCCCCTCCGGTTCCTT
3._IMC_14___
AACCCTAAGGAGCCCCCTCCGGTTCCTT
4._IMC_14___
AACCCTAAGGAGCCCCCTCCGGTTCCTT
5._IMC_14___
AACCCTAAGGAGCCCCCTCCGGTTCCTT
6._IMC_14___
AACCCTAAGGAGCCCCCTCCGGTTCCTT
7._IMC_14___
AACCCTAAGGAGCCCCCTCCGGTTCCTT
8._IMC_14___
AACCCTAAGGAGCCCCCTCCGGTTCCTT
9._IMC_14___
AACCCTAAGGAGCCCCCTCCGGTTCCTT
10._IMC_14___
AA__CTAAGG__CCCCCTCCGGTTCCTT
11._IMC_14___
AA__CTAAGGAGCCCCCTCCGGTTCCTT
12._IMC_14___
AA__CTAAGGAGCCCCCTCCGGTTCCTT
13._IMC_14___
AACCCTAA________CTCCGG__CC__
14._IMC_14___
AACCCTAA________CTCCGG__CC__
15._IMC_14___
AACCCTAA________CTCCGG__CC__
16._IMC_14___
AACCCTAA________CTCCGG__CC__
17._IMC_14___
AACCCTAA________CTCCGG__CC__
18._IMC_14___
AACCCTAA________CTCCGG__CC__
19._IMC_14___
AACCCTAA________CTCCGG__CC__
20._IMC_14___
AACCCTAA________CTCCGG__CC__
21._IMC_14___
AACCCTAA________CTCCGG__CC__
22._IMC_14___
AACCCTAA________CTCCGG__CC__
23._IMC_14___
AA__CTAA________CTCCGG__CC__
24._IMC_14___
AA__CTAA________CTCCGG__CC__
25._IMC_14___
AA__CTAA________CTCCGG__CC__
26._IMC_14___
AACCCTAA________CTCCGG__CC__
27._IMC_14___
____CTAA____TT__CT____TTCC__
28._IMC_14___
______AA____TT______________
29._IMC_14___
AAAACTCC________CTCTGG__CC__
30._IMC_14___
AACC__AAGGAG__GGAG__GGAAGGAA
31._IMC_14___
AACC__AAGGAG__GGAG__GGAAGGAA
 15 16 17 18 19 20 21 22 23 24 25 26 27 28
_Input profile
AAAAGGCGCCGGCCAATTGGTTAACCCC
1._IMC_14___
AAAAGGCGCCGGCCAATTGGTTAACCCC
2._IMC_14___
AAAAGGCGCCGGCCAATTGGTTAACCCC
3._IMC_14___
AAAAGGCGCCGGCCAATTGGTTAACCCC
4._IMC_14___
AAAAGGCGCCGGCCAATTGGTTAACCCC
5._IMC_14___
AAAAGGCGCCGGCCAATTGGTTAACCCC
6._IMC_14___
AAAAGGCGCCGGCCAATTGGTTAACCCC
7._IMC_14___
AAAAGGCGCCGGCCAA__GGTTAACCCC
8._IMC_14___
AAAAGGCGCCGGCCAATTGGTTAACCCC
9._IMC_14___
AAAAGGCGCCGGCCAA__GGTTAACCCC
10._IMC_14___
AAAAGG__CCGGCCAA__GGTTAACCCC
11._IMC_14___
AAAAGGCGCCGGCCAA__GGTTAACCCC
12._IMC_14___
AAAAGGCGCCGGCCAA__GGTTAACCCC
13._IMC_14___
____GG____GG________TTAA__CC
14._IMC_14___
____GG____GG________TTAA__CC
15._IMC_14___
____GG____GG________TTAA__CC
16._IMC_14___
____GG____GG________TTAA__CC
17._IMC_14___
____GG____GG________TTAA__CC
18._IMC_14___
____GG____GG________TTAA__CC
19._IMC_14___
____GG____GG________TTAA__CC
20._IMC_14___
____GG____GG________TTAA__CC
21._IMC_14___
____GG____GG________TTAA__CC
22._IMC_14___
____GG____GG________TTAA__CC
23._IMC_14___
____GG____GG________TTAA__CC
24._IMC_14___
____GG____GG________TTAA__CC
25._IMC_14___
____GG____GG________TTAA__CC
26._IMC_14___
____GG____GG________TTAA__CC
27._IMC_14___
________CC________GG__AACCCC
28._IMC_14___
____GGTT__________________CC
29._IMC_14___
____AA____GG________TTAA__GG
30._IMC_14___
TTAAGGCG__GGGGAAAAGGTTAAGGGG
31._IMC_14___
TTAAGGCG__GGGGAAAAGGTTAAGGGG
 29 30 31 32 33 34 35 36 37 38 39 40 41 42
_Input profile
AATTGGGGGGCCAAGTGGTTAGCCGGCC
1._IMC_14___
AATTGGGGGGCCAAGTGGTTAGCCGGCC
2._IMC_14___
AATTGGGGGGCCAAGTGGTTAGCCGGCC
3._IMC_14___
AATTGGGGGGCCAAGTGGTTAGCCGGCC
4._IMC_14___
AATTGGGGGGCCAAGTGGTTAGCCGGCC
5._IMC_14___
AATTGGGGGGCCAAGTGGTTAGCCGGCC
6._IMC_14___
AATTGGGGGGCCAAGTGGTTAGCCGGCC
7._IMC_14___
AATTGGGGGGCCAAGTGGTTAGCCGGCC
8._IMC_14___
AATTGGGGGGCCAAGTGGTTAGCCGGCC
9._IMC_14___
AATTGGGGGGCCAAGTGGTTAGCCGGCC
10._IMC_14___
AATTGGGGGGCCAAGTGGTTAGCCGGCC
11._IMC_14___
AATTGGGGGGCCAAGTGGTTAGCCGGCC
12._IMC_14___
AATTGGGGGGCCAAGTGGTTAGCCGGCC
13._IMC_14___
AA______GG__AAGT____AG______
14._IMC_14___
AA______GG__AAGT____AG______
15._IMC_14___
AA______GG__AAGT____AG______
16._IMC_14___
AA______GG__AAGT____AG______
17._IMC_14___
AA______GG__AAGT____AG______
18._IMC_14___
AA______GG__AAGT____AG______
19._IMC_14___
AA______GG__AAGT____AG______
20._IMC_14___
AA______GG__AAGT____AG______
21._IMC_14___
AA______GG__AAGT____AG______
22._IMC_14___
AA______GG__AAGT____AG______
23._IMC_14___
AA______GG__AAGT____AG______
24._IMC_14___
AA______GG__AAGT____AG______
25._IMC_14___
AA______GG__AAGT____AG______
26._IMC_14___
AA______GG__AAGT____AG______
27._IMC_14___
______GGGGCCAAGT____AGCC____
28._IMC_14___
________GG__AA________CC____
29._IMC_14___
AA______CC__AGGT____AG______
30._IMC_14___
AAAACCGGGGCCAAACCCAAAGGGGGGG
31._IMC_14___
AAAACCGGGGCCAAACCCAAAGGGGGGG
 43 44 45 46 47 48 49 50 51 52 53 54 55 56
_Input profile
GGTTTTAGAGAACCCCGGAGTTTTCTCC
1._IMC_14___
GGTTTTAGAGAACCCCGGAGTTTTCTCC
2._IMC_14___
GGTTTTAGAGAACCCCGGAGTTTTCTCC
3._IMC_14___
GGTTTTAGAGAACCCCGGAGTTTTCTCC
4._IMC_14___
GGTTTTAGAGAACCCCGGAGTTTTCTCC
5._IMC_14___
GGTTTTAGAGAACCCCGGAGTTTTCTCC
6._IMC_14___
GGTTTTAGAG__CCCCGGAGTTTTCTCC
7._IMC_14___
GGTTTTAGAG__CCCCGGAGTTTTCTCC
8._IMC_14___
GGTTTT__AGAACCCCGGAGTT__CTCC
9._IMC_14___
GGTTTT__AG__CCCCGGAGTT__CTCC
10._IMC_14___
GGTTTT__AG__CCCCGGAGTT__CTCC
11._IMC_14___
GGTTTT__AG__CCCCGGAGTT__CTCC
12._IMC_14___
GGTTTT__AG__CCCCGGAGTT__CTCC
13._IMC_14___
____TT__________________CTCC
14._IMC_14___
____TT__________________CTCC
15._IMC_14___
____TT__________________CTCC
16._IMC_14___
____TT__________________CTCC
17._IMC_14___
____TT__________________CTCC
18._IMC_14___
____TT__________________CTCC
19._IMC_14___
____TT__________________CTCC
20._IMC_14___
____TT__________________CTCC
21._IMC_14___
____TT__________________CTCC
22._IMC_14___
____TT__________________CTCC
23._IMC_14___
____TT__________________CTCC
24._IMC_14___
____TT__________________CTCC
25._IMC_14___
____TT__________________CTCC
26._IMC_14___
____TT__________________CTCC
27._IMC_14___
GGTT____AG____________TTCT__
28._IMC_14___
________AG__________________
29._IMC_14___
____CC__________________CTCT
30._IMC_14___
CC__AA__AGAAGG__GGAGAAAAAGGG
31._IMC_14___
CC__AA__AGAAGG__GGAGAAAAAGGG
 57 58 59 60 61 62 63 64 65 66 67 68 69 70
_Input profile
TTGGCGCCTTAAGGGGACAGGGGGGGTT
1._IMC_14___
TTGGCGCCTTAAGGGGACAGGGGGGGTT
2._IMC_14___
TTGGCGCCTTAAGGGGACAGGGGGGGTT
3._IMC_14___
TTGGCGCCTTAAGGGGACAGGGGGGGTT
4._IMC_14___
TTGGCGCCTTAAGGGGACAGGGGGGGTT
5._IMC_14___
TTGGCGCCTTAAGGGGACAGGGGGGGTT
6._IMC_14___
TTGGCGCCTTAAGGGGACAGGGGGGGTT
7._IMC_14___
TTGGCGCCTTAAGGGGACAGGGGGGGTT
8._IMC_14___
TTGGCG__TTAAGGGGACAGGGGGGGTT
9._IMC_14___
TTGGCG__TTAAGGGGACAGGGGGGGTT
10._IMC_14___
TTGGCG__TTAAGGGGACAGGGGGGGTT
11._IMC_14___
TTGGCG__TTAAGGGGACAGGGGGGGTT
12._IMC_14___
TTGGCG__TTAAGGGGACAGGGGGGGTT
13._IMC_14___
____CG__TTAAGG__ACAGGGGG____
14._IMC_14___
____CG__TTAAGG__ACAGGGGG____
15._IMC_14___
____CG__TTAAGG__ACAGGGGG____
16._IMC_14___
____CG__TTAAGG__ACAGGGGG____
17._IMC_14___
____CG__TTAAGG__ACAGGGGG____
18._IMC_14___
____CG__TTAAGG__ACAGGGGG____
19._IMC_14___
____CG__TTAAGG__ACAGGGGG____
20._IMC_14___
____CG__TTAAGG__ACAGGGGG____
21._IMC_14___
____CG__TTAAGG__ACAGGGGG____
22._IMC_14___
____CG__TTAAGG__ACAGGGGG____
23._IMC_14___
____CG__TTAAGG__ACAGGGGG____
24._IMC_14___
____CG__TTAAGG__ACAGGGGG____
25._IMC_14___
____CG__TTAAGG__ACAGGGGG____
26._IMC_14___
________TTACGG__ACAGGGGG____
27._IMC_14___
TT__CGCCTTAC__GGACAGGGGGGG__
28._IMC_14___
__GG____________ACAG__GGGG__
29._IMC_14___
____CC__CTACGG__CCAATTGG____
30._IMC_14___
AAGGCGGGAAACGGGGACAGCCCCGG__
31._IMC_14___
AAGGCGGGAAACGGGGACAGCCCCGG__
 71 72 73 74 75 76 77 78 79 80 81 82 83 84
_Input profile
CCAACCAAAAACACAGCCCGCCATACCC
1._IMC_14___
CCAACCAAAAACACAGCCCGCCATACCC
2._IMC_14___
CCAACCAAAAACACAGCCCGCCATACCC
3._IMC_14___
CCAACCAAAAACACAGCCCGCCATACCC
4._IMC_14___
CCAACCAAAAACACAGCCCGCCATACCC
5._IMC_14___
CC__CCAAAAACACAGCCCGCCAT__CC
6._IMC_14___
CCAACCAAAAACACAGCCCGCCATACCC
7._IMC_14___
CCAACCAAAAACACAGCCCGCCATACCC
8._IMC_14___
CC__CCAAAAACACAGCCCGCCAT__CC
9._IMC_14___
CC__CCAAAA__AC__CCCGCCAT__CC
10._IMC_14___
CC__CCAAAA__ACAGCCCGCCAT__CC
11._IMC_14___
CC__CCAA____AC__CCCGCCAT__CC
12._IMC_14___
CC__CCAA____AC__CCCGCCAT__CC
13._IMC_14___
__AACC__________CCCG______CC
14._IMC_14___
__AACC__________CCCG______CC
15._IMC_14___
__AACC__________CCCG______CC
16._IMC_14___
__AACC__________CCCG______CC
17._IMC_14___
__AACC__________CCCG______CC
18._IMC_14___
____CC__________CCCG______CC
19._IMC_14___
____CC__________CCCG______CC
20._IMC_14___
__AACC__________CCCG______CC
21._IMC_14___
__AACC__________CCCG______CC
22._IMC_14___
____CC__________CCCG______CC
23._IMC_14___
____CC__________CCCG______CC
24._IMC_14___
____CC__________CCCG______CC
25._IMC_14___
____CC__________CCCG______CC
26._IMC_14___
__AACC__________CCCG______CC
27._IMC_14___
________________CCCG____ACCC
28._IMC_14___
__AA____________CCCG____AC__
29._IMC_14___
__AGTT__________CC________CT
30._IMC_14___
____GGAAAAACAC__CCCGGGATACGG
31._IMC_14___
____GGAAAAACAC__CCCGGGATACGG
 85 86 87 88 89 90 91 92 93 94     
_Input profile
TTCCCTAACCTTGTTTATGGX_XX_XX_XX_X
1._IMC_14___
TTCCCTAACCTTGTTTATGGX_XX_XX_XX_X
2._IMC_14___
TTCCCTAACCTTGTTTATGGX_XX_XX_XX_X
3._IMC_14___
TTCCCTAACCTTGTTTATGGX_XX_XX_XX_X
4._IMC_14___
TTCCCTAACCTTGTTTATGGX_XX_XX_XX_X
5._IMC_14___
TTCCCTAACCTTGTTTATGGX_XX_XX_XX_X
6._IMC_14___
TTCCCTAACCTT__TTATGGX_XX_XX_XX_X
7._IMC_14___
TTCCCTAACCTT__TTATGGX_XX_XX_XX_X
8._IMC_14___
TTCCCTAACCTTGTTTATGGX_XX_XX_XX_X
9._IMC_14___
TTCCCTAACCTT__TTATGGX_XX_XX_XX_X
10._IMC_14___
TTCCCTAACCTT__TTATGGX_XX_XX_XX_X
11._IMC_14___
TTCCCTAACCTT__TTATGGX_XX_XX_XX_X
12._IMC_14___
__CCCTAACCTT__TTATGGX_XX_XX_XX_X
13._IMC_14___
TTCC__AA__TTGTTT____X_XX_XX_XX_X
14._IMC_14___
TTCC__AA__TTGTTT____X_XX_XX_XX_X
15._IMC_14___
TTCC__AA__TTGTTT____X_XX_XX_XX_X
16._IMC_14___
TTCC__AA__TTGTTT____X_XX_XX_XX_X
17._IMC_14___
TTCC__AA__TTGTTT____X_XX_XX_XX_X
18._IMC_14___
TTCC__AA__TTGTTT____X_XX_XX_XX_X
19._IMC_14___
TTCC__AA__TTGTTT____X_XX_XX_XX_X
20._IMC_14___
TTCC__AA__TT__TT____X_XX_XX_XX_X
21._IMC_14___
TTCC__AA__TT__TT____X_XX_XX_XX_X
22._IMC_14___
TTCC__AA__TT__TT____X_XX_XX_XX_X
23._IMC_14___
TTCC__AA__TT__TT____X_XX_XX_XX_X
24._IMC_14___
TTCC__AA__TT__TT____X_XX_XX_XX_X
25._IMC_14___
__CC__AA__TT__TT____X_XX_XX_XX_X
26._IMC_14___
TT____AA__TTGTTT____X_XX_XX_XX_X
27._IMC_14___
______AACCTTGT______X_XX_XX_XX_X
28._IMC_14___
__CC____CC__GT______X_XX_XX_XX_X
29._IMC_14___
CTCT__AG__CTTTTT____X_XX_XX_XX_X
30._IMC_14___
AA__AG____AAAAAAATGGX_XX_XX_XX_X
31._IMC_14___
AA__AG____AAAAAAATGGX_XX_XX_XX_X

Input profile: IMC_14 GC-03-030-3-09

 
Mars Center for Cocoa Science, Brazil
Location: Tree: 11
Notes: 11
 Mars, 2018

1._IMC_14 GC-03-030-3-09

identical
94 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 5
Notes: 5
 Mars, 2018

2._IMC_14 GC-03-030-3-09

identical
94 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1
 Mars, 2018

3._IMC_14 GC-03-030-3-09

identical
94 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 9
Notes: 9
 Mars, 2018

4._IMC_14 GC-04-054-3-18

identical
94 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: 4 > FP2
 Mars, 2018

5._IMC_14 GC-03-030-3-09

identical
92 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3
 Mars, 2018

6._IMC_14 GC-03-030-3-09

identical
92 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 13
Notes: 13
 Mars, 2018

7._IMC_14 GC-03-030-3-09

identical
91 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 16
Notes: 16
 Mars, 2018

8._IMC_14 GC-03-030-3-09

identical
89 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2
 Mars, 2018

9._IMC_14 GC-03-030-3-09

identical
84 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 12
Notes: 12
 Mars, 2018

10._IMC_14 GC-03-030-3-09

identical
82 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: 4
 Mars, 2018

11._IMC_14 GC-03-030-3-09

identical
82 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 6
Notes: 6
 Mars, 2018

12._IMC_14 GC-03-030-3-09

identical
81 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 10
Notes: 10
 Mars, 2018

13._IMC_14

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 3309 5
 Dapeng Zhang, 2016

14._IMC_14

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 3309 1
 Dapeng Zhang, 2016

15._IMC_14

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 3309 9
 Dapeng Zhang, 2016

16._IMC_14

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 3309 11
 Dapeng Zhang, 2016

17._IMC_14

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 4318 4 > FP
 Dapeng Zhang, 2016

18._IMC_14

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 3309 2
 Dapeng Zhang, 2016

19._IMC_14

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 3309 3
 Dapeng Zhang, 2016

20._IMC_14

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 3309 13
 Dapeng Zhang, 2016

21._IMC_14

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 3309 16
 Dapeng Zhang, 2016

22._IMC_14

identical
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: 3309 12
 Dapeng Zhang, 2016

23._IMC_14

identical
37 shared markers

Mars Center for Cocoa Science, Brazil
Location: 3309 4
 Dapeng Zhang, 2016

24._IMC_14

identical
37 shared markers

Mars Center for Cocoa Science, Brazil
Location: 3309 6
 Dapeng Zhang, 2016

25._IMC_14

identical
36 shared markers

Mars Center for Cocoa Science, Brazil
Location: 3309 10
 Dapeng Zhang, 2016

26._IMC_14

98.7 %
38 shared markers

International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: Marper D600
 Dapeng Zhang, 2016

27._IMC_14 RUQ_1634

96.4 %
42 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

28._IMC_14 RUQ_1634

90.5 %
21 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Lambert Motilal, 2023
Population Assignment: 

29._IMC_14 RUQ_1634

60.3 %
39 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2016

30._IMC_14 GC-03-30-3-9

53.1 %
80 shared markers

Mars Center for Cocoa Science, Brazil
Location: Field: 3, Block: 3, Rep: 9, Tree: 1
Notes: MCCS_Structure_refs_above_0.9membership
 Mars, 2018

31._IMC_14 RUQ_1634

53.1 %
80 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
Notes: Reading_Collection
 Mars, 2018

 


  Key to SNP Markers

1TcSNP1075 2TcSNP1350 3TcSNP534 4TcSNP591 5TcSNP42
6TcSNP418 7TcSNP702 8TcSNP1096 9TcSNP1060 10TcSNP1165
11TcSNP429 12TcSNP75 13TcSNP891 14TcSNP122 15TcSNP316
16TcSNP521 17TcSNP1062 18TcSNP836 19TcSNP878 20TcSNP929
21TcSNP413 22TcSNP653 23TcSNP1149 24TcSNP174 25TcSNP32
26TcSNP372 27TcSNP448 28TcSNP872 29TcSNP953 30TcSNP1034
31TcSNP1175 32TcSNP1111 33TcSNP577 34TcSNP90 35TcSNP998
36TcSNP150 37TcSNP28 38TcSNP751 39TcSNP1484 40TcSNP602
41TcSNP561 42TcSNP894 43TcSNP1063 44TcSNP1126 45TcSNP1270
46TcSNP606 47TcSNP329 48TcSNP689 49TcSNP944 50TcSNP1242
51TcSNP1383 52TcSNP547 53TcSNP776 54TcSNP1309 55TcSNP151
56TcSNP1520 57TcSNP799 58TcSNP899 59TcSNP226 60TcSNP1439
61TcSNP1442 62TcSNP193 63TcSNP25 64TcSNP364 65TcSNP144
66TcSNP230 67TcSNP560 68TcSNP723 69TcSNP731 70TcSNP701
71TcSNP1041 72TcSNP645 73TcSNP917 74Tcm003s01336581 75Tcm003s07402719
76Tcm001s00947643 77Tcm006s26664133 78Tcm002s20575712 79TcSNP529 80TcSNP1458
81TcSNP60 82TcSNP430 83TcSNP823 84TcSNP619 85TcSNP994
86TcSNP1144 87TcSNP1156 88TcSNP469 89TcSNP999 90TcSNP242
91TcSNP1253 92TcSNP1414 93TcSNP154 94TcSNP240