SNP Profiles of NA 33   View Data

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 Key

 1 2 3 4 5 6 7 8 9 10 11 12 13 14
_Input profile
AACTAAGGAGCCCCCTCCGGTTCCTTAA
1._IMC_14___
AACTAAGGAGCCCCCTCCGGTTCCTTAA
2._IMC_14___
AACTAAGGAGCCCCCTCCGGTTCCTTAA
3._IMC_14___
AACTAAGGAGCCCCCTCCGGTTCCTTAA
4._IMC_14___
AACTAAGGAGCCCCCTCCGGTTCCTTAA
5._IMC_14___
AACTAAGGAGCCCCCTCCGGTTCCTTAA
6._IMC_14___
AACTAAGGAGCCCCCTCCGGTTCCTTAA
7._IMC_14___
AACTAAGGAGCCCCCTCCGGTTCCTTAA
8._IMC_14___
AACTAAGGAGCCCCCTCCGGTTCCTTAA
9._IMC_14___
AACTAAGGAGCCCCCTCCGGTTCCTTAA
10._IMC_14___
AACTAAGGAGCCCCCTCCGGTTCCTTAA
11._IMC_14___
AACTAAGGAGCCCCCTCCGGTTCCTTAA
12._IMC_14___
AACTAAGG__CCCCCTCCGGTTCCTTAA
13._IMC_14___
AACTAA________CTCCGG__CC____
14._IMC_14___
AACTAA________CTCCGG__CC____
15._IMC_14___
AACTAA________CTCCGG__CC____
16._IMC_14___
AACTAA________CTCCGG__CC____
17._IMC_14___
AACTAA________CTCCGG__CC____
18._IMC_14___
AACTAA________CTCCGG__CC____
19._IMC_14___
AACTAA________CTCCGG__CC____
20._IMC_14___
AACTAA________CTCCGG__CC____
21._IMC_14___
AACTAA________CTCCGG__CC____
22._IMC_14___
AACTAA________CTCCGG__CC____
23._IMC_14___
AACTAA________CTCCGG__CC____
24._IMC_14___
AACTAA________CTCCGG__CC____
25._IMC_14___
AACTAA________CTCCGG__CC____
26._IMC_14___
AACTAA________CTCCGG__CC____
27._IMC_14___
__CTAA____TT__CT____TTCC____
28._IMC_14___
____AA____TT________________
29._IMC_14___
AACTCC________CTCTGG__CC____
30._IMC_14___
AA__AAGGAG__GGAG__GGAAGGAATT
31._IMC_14___
AA__AAGGAG__GGAG__GGAAGGAATT
 15 16 17 18 19 20 21 22 23 24 25 26 27 28
_Input profile
AAGGCGCCGGCCAAGGTTAACCCCAATT
1._IMC_14___
AAGGCGCCGGCCAAGGTTAACCCCAATT
2._IMC_14___
AAGGCGCCGGCCAAGGTTAACCCCAATT
3._IMC_14___
AAGGCGCCGGCCAAGGTTAACCCCAATT
4._IMC_14___
AAGGCGCCGGCCAAGGTTAACCCCAATT
5._IMC_14___
AAGGCGCCGGCCAAGGTTAACCCCAATT
6._IMC_14___
AAGGCGCCGGCCAAGGTTAACCCCAATT
7._IMC_14___
AAGGCGCCGGCCAAGGTTAACCCCAATT
8._IMC_14___
AAGGCGCCGGCCAAGGTTAACCCCAATT
9._IMC_14___
AAGGCGCCGGCCAAGGTTAACCCCAATT
10._IMC_14___
AAGGCGCCGGCCAAGGTTAACCCCAATT
11._IMC_14___
AAGGCGCCGGCCAAGGTTAACCCCAATT
12._IMC_14___
AAGG__CCGGCCAAGGTTAACCCCAATT
13._IMC_14___
__GG____GG______TTAA__CCAA__
14._IMC_14___
__GG____GG______TTAA__CCAA__
15._IMC_14___
__GG____GG______TTAA__CCAA__
16._IMC_14___
__GG____GG______TTAA__CCAA__
17._IMC_14___
__GG____GG______TTAA__CCAA__
18._IMC_14___
__GG____GG______TTAA__CCAA__
19._IMC_14___
__GG____GG______TTAA__CCAA__
20._IMC_14___
__GG____GG______TTAA__CCAA__
21._IMC_14___
__GG____GG______TTAA__CCAA__
22._IMC_14___
__GG____GG______TTAA__CCAA__
23._IMC_14___
__GG____GG______TTAA__CCAA__
24._IMC_14___
__GG____GG______TTAA__CCAA__
25._IMC_14___
__GG____GG______TTAA__CCAA__
26._IMC_14___
__GG____GG______TTAA__CCAA__
27._IMC_14___
______CC______GG__AACCCC____
28._IMC_14___
__GGTT________________CC____
29._IMC_14___
__AA____GG______TTAA__GGAA__
30._IMC_14___
AAGGCG__GGGGAAGGTTAAGGGGAAAA
31._IMC_14___
AAGGCG__GGGGAAGGTTAAGGGGAAAA
 29 30 31 32 33 34 35 36 37 38 39 40 41 42
_Input profile
GGGGGGCCAAGTGGTTAGCCGGCCGGTT
1._IMC_14___
GGGGGGCCAAGTGGTTAGCCGGCCGGTT
2._IMC_14___
GGGGGGCCAAGTGGTTAGCCGGCCGGTT
3._IMC_14___
GGGGGGCCAAGTGGTTAGCCGGCCGGTT
4._IMC_14___
GGGGGGCCAAGTGGTTAGCCGGCCGGTT
5._IMC_14___
GGGGGGCCAAGTGGTTAGCCGGCCGGTT
6._IMC_14___
GGGGGGCCAAGTGGTTAGCCGGCCGGTT
7._IMC_14___
GGGGGGCCAAGTGGTTAGCCGGCCGGTT
8._IMC_14___
GGGGGGCCAAGTGGTTAGCCGGCCGGTT
9._IMC_14___
GGGGGGCCAAGTGGTTAGCCGGCCGGTT
10._IMC_14___
GGGGGGCCAAGTGGTTAGCCGGCCGGTT
11._IMC_14___
GGGGGGCCAAGTGGTTAGCCGGCCGGTT
12._IMC_14___
GGGGGGCCAAGTGGTTAGCCGGCCGGTT
13._IMC_14___
____GG__AAGT____AG__________
14._IMC_14___
____GG__AAGT____AG__________
15._IMC_14___
____GG__AAGT____AG__________
16._IMC_14___
____GG__AAGT____AG__________
17._IMC_14___
____GG__AAGT____AG__________
18._IMC_14___
____GG__AAGT____AG__________
19._IMC_14___
____GG__AAGT____AG__________
20._IMC_14___
____GG__AAGT____AG__________
21._IMC_14___
____GG__AAGT____AG__________
22._IMC_14___
____GG__AAGT____AG__________
23._IMC_14___
____GG__AAGT____AG__________
24._IMC_14___
____GG__AAGT____AG__________
25._IMC_14___
____GG__AAGT____AG__________
26._IMC_14___
____GG__AAGT____AG__________
27._IMC_14___
__GGGGCCAAGT____AGCC____GGTT
28._IMC_14___
____GG__AA________CC________
29._IMC_14___
____CC__AGGT____AG__________
30._IMC_14___
CCGGGGCCAAACCCAAAGGGGGGGCC__
31._IMC_14___
CCGGGGCCAAACCCAAAGGGGGGGCC__
 43 44 45 46 47 48 49 50 51 52 53 54 55 56
_Input profile
TTAGCCCCGGAGTTCTCCTTGGCGTTAA
1._IMC_14___
TTAGCCCCGGAGTTCTCCTTGGCGTTAA
2._IMC_14___
TTAGCCCCGGAGTTCTCCTTGGCGTTAA
3._IMC_14___
TTAGCCCCGGAGTTCTCCTTGGCGTTAA
4._IMC_14___
TTAGCCCCGGAGTTCTCCTTGGCGTTAA
5._IMC_14___
TTAGCCCCGGAGTTCTCCTTGGCGTTAA
6._IMC_14___
TTAGCCCCGGAGTTCTCCTTGGCGTTAA
7._IMC_14___
TTAGCCCCGGAGTTCTCCTTGGCGTTAA
8._IMC_14___
TTAGCCCCGGAGTTCTCCTTGGCGTTAA
9._IMC_14___
TTAGCCCCGGAGTTCTCCTTGGCGTTAA
10._IMC_14___
TTAGCCCCGGAGTTCTCCTTGGCGTTAA
11._IMC_14___
TTAGCCCCGGAGTTCTCCTTGGCGTTAA
12._IMC_14___
TTAGCCCCGGAGTTCTCCTTGGCGTTAA
13._IMC_14___
TT____________CTCC____CGTTAA
14._IMC_14___
TT____________CTCC____CGTTAA
15._IMC_14___
TT____________CTCC____CGTTAA
16._IMC_14___
TT____________CTCC____CGTTAA
17._IMC_14___
TT____________CTCC____CGTTAA
18._IMC_14___
TT____________CTCC____CGTTAA
19._IMC_14___
TT____________CTCC____CGTTAA
20._IMC_14___
TT____________CTCC____CGTTAA
21._IMC_14___
TT____________CTCC____CGTTAA
22._IMC_14___
TT____________CTCC____CGTTAA
23._IMC_14___
TT____________CTCC____CGTTAA
24._IMC_14___
TT____________CTCC____CGTTAA
25._IMC_14___
TT____________CTCC____CGTTAA
26._IMC_14___
TT____________CTCC______TTAC
27._IMC_14___
__AG__________CT__TT__CGTTAC
28._IMC_14___
__AG________________GG______
29._IMC_14___
CC____________CTCT____CCCTAC
30._IMC_14___
AAAGGG__GGAGAAAGGGAAGGCGAAAC
31._IMC_14___
AAAGGG__GGAGAAAGGGAAGGCGAAAC
 57 58 59 60 61 62 63 64 65 66 67 68 69 70
_Input profile
GGGGACAGGGGGGGTTCCCCAAACCCCG
1._IMC_14___
GGGGACAGGGGGGGTTCCCCAAACCCCG
2._IMC_14___
GGGGACAGGGGGGGTTCCCCAAACCCCG
3._IMC_14___
GGGGACAGGGGGGGTTCCCCAAACCCCG
4._IMC_14___
GGGGACAGGGGGGGTTCCCCAAACCCCG
5._IMC_14___
GGGGACAGGGGGGGTTCCCCAAACCCCG
6._IMC_14___
GGGGACAGGGGGGGTTCCCCAAACCCCG
7._IMC_14___
GGGGACAGGGGGGGTTCCCCAAACCCCG
8._IMC_14___
GGGGACAGGGGGGGTTCCCCAAACCCCG
9._IMC_14___
GGGGACAGGGGGGGTTCCCCAAACCCCG
10._IMC_14___
GGGGACAGGGGGGGTTCCCCAAACCCCG
11._IMC_14___
GGGGACAGGGGGGGTTCCCCAAACCCCG
12._IMC_14___
GGGGACAGGGGGGGTTCCCCAAACCCCG
13._IMC_14___
GG__ACAGGGGG______CC____CCCG
14._IMC_14___
GG__ACAGGGGG______CC____CCCG
15._IMC_14___
GG__ACAGGGGG______CC____CCCG
16._IMC_14___
GG__ACAGGGGG______CC____CCCG
17._IMC_14___
GG__ACAGGGGG______CC____CCCG
18._IMC_14___
GG__ACAGGGGG______CC____CCCG
19._IMC_14___
GG__ACAGGGGG______CC____CCCG
20._IMC_14___
GG__ACAGGGGG______CC____CCCG
21._IMC_14___
GG__ACAGGGGG______CC____CCCG
22._IMC_14___
GG__ACAGGGGG______CC____CCCG
23._IMC_14___
GG__ACAGGGGG______CC____CCCG
24._IMC_14___
GG__ACAGGGGG______CC____CCCG
25._IMC_14___
GG__ACAGGGGG______CC____CCCG
26._IMC_14___
GG__ACAGGGGG______CC____CCCG
27._IMC_14___
__GGACAGGGGGGG__________CCCG
28._IMC_14___
____ACAG__GGGG__________CCCG
29._IMC_14___
GG__CCAATTGG______TT____CC__
30._IMC_14___
GGGGACAGCCCCGG____GGAAACCCCG
31._IMC_14___
GGGGACAGCCCCGG____GGAAACCCCG
 71 72 73 74 75 76 77 78 79 80 81 82   
_Input profile
CCATCCTTCCCTAACCTTTTATGGX_XX_X
1._IMC_14___
CCATCCTTCCCTAACCTTTTATGGX_XX_X
2._IMC_14___
CCATCCTTCCCTAACCTTTTATGGX_XX_X
3._IMC_14___
CCATCCTTCCCTAACCTTTTATGGX_XX_X
4._IMC_14___
CCATCCTTCCCTAACCTTTTATGGX_XX_X
5._IMC_14___
CCATCCTTCCCTAACCTTTTATGGX_XX_X
6._IMC_14___
CCATCCTTCCCTAACCTTTTATGGX_XX_X
7._IMC_14___
CCATCCTTCCCTAACCTTTTATGGX_XX_X
8._IMC_14___
CCATCCTTCCCTAACCTTTTATGGX_XX_X
9._IMC_14___
CCATCCTTCCCTAACCTTTTATGGX_XX_X
10._IMC_14___
CCATCCTTCCCTAACCTTTTATGGX_XX_X
11._IMC_14___
CCATCC__CCCTAACCTTTTATGGX_XX_X
12._IMC_14___
CCATCCTTCCCTAACCTTTTATGGX_XX_X
13._IMC_14___
____CCTTCC__AA__TTTT____X_XX_X
14._IMC_14___
____CCTTCC__AA__TTTT____X_XX_X
15._IMC_14___
____CCTTCC__AA__TTTT____X_XX_X
16._IMC_14___
____CCTTCC__AA__TTTT____X_XX_X
17._IMC_14___
____CCTTCC__AA__TTTT____X_XX_X
18._IMC_14___
____CCTTCC__AA__TTTT____X_XX_X
19._IMC_14___
____CCTTCC__AA__TTTT____X_XX_X
20._IMC_14___
____CCTTCC__AA__TTTT____X_XX_X
21._IMC_14___
____CCTTCC__AA__TTTT____X_XX_X
22._IMC_14___
____CCTTCC__AA__TTTT____X_XX_X
23._IMC_14___
____CCTTCC__AA__TTTT____X_XX_X
24._IMC_14___
____CCTTCC__AA__TTTT____X_XX_X
25._IMC_14___
____CC__CC__AA__TTTT____X_XX_X
26._IMC_14___
____CCTT____AA__TTTT____X_XX_X
27._IMC_14___
____CC______AACCTT______X_XX_X
28._IMC_14___
________CC____CC________X_XX_X
29._IMC_14___
____CTCTCT__AG__CTTT____X_XX_X
30._IMC_14___
GGATGGAA__AG____AAAAATGGX_XX_X
31._IMC_14___
GGATGGAA__AG____AAAAATGGX_XX_X

Input profile: IMC_14 GC-03-030-3-09

 
Mars Center for Cocoa Science, Brazil
Location: Tree: 6
Notes: 6
 Mars, 2018

1._IMC_14 GC-03-030-3-09

identical
82 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 5
Notes: 5
 Mars, 2018

2._IMC_14 GC-03-030-3-09

identical
82 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3
 Mars, 2018

3._IMC_14 GC-03-030-3-09

identical
82 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2
 Mars, 2018

4._IMC_14 GC-03-030-3-09

identical
82 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1
 Mars, 2018

5._IMC_14 GC-03-030-3-09

identical
82 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 9
Notes: 9
 Mars, 2018

6._IMC_14 GC-03-030-3-09

identical
82 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 11
Notes: 11
 Mars, 2018

7._IMC_14 GC-03-030-3-09

identical
82 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 12
Notes: 12
 Mars, 2018

8._IMC_14 GC-03-030-3-09

identical
82 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 13
Notes: 13
 Mars, 2018

9._IMC_14 GC-03-030-3-09

identical
82 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 16
Notes: 16
 Mars, 2018

10._IMC_14 GC-04-054-3-18

identical
82 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: 4 > FP2
 Mars, 2018

11._IMC_14 GC-03-030-3-09

identical
81 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 10
Notes: 10
 Mars, 2018

12._IMC_14 GC-03-030-3-09

identical
80 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: 4
 Mars, 2018

13._IMC_14

identical
37 shared markers

Mars Center for Cocoa Science, Brazil
Location: 3309 5
 Dapeng Zhang, 2016

14._IMC_14

identical
37 shared markers

Mars Center for Cocoa Science, Brazil
Location: 3309 1
 Dapeng Zhang, 2016

15._IMC_14

identical
37 shared markers

Mars Center for Cocoa Science, Brazil
Location: 3309 2
 Dapeng Zhang, 2016

16._IMC_14

identical
37 shared markers

Mars Center for Cocoa Science, Brazil
Location: 3309 3
 Dapeng Zhang, 2016

17._IMC_14

identical
37 shared markers

Mars Center for Cocoa Science, Brazil
Location: 3309 4
 Dapeng Zhang, 2016

18._IMC_14

identical
37 shared markers

Mars Center for Cocoa Science, Brazil
Location: 3309 6
 Dapeng Zhang, 2016

19._IMC_14

identical
37 shared markers

Mars Center for Cocoa Science, Brazil
Location: 3309 9
 Dapeng Zhang, 2016

20._IMC_14

identical
37 shared markers

Mars Center for Cocoa Science, Brazil
Location: 3309 11
 Dapeng Zhang, 2016

21._IMC_14

identical
37 shared markers

Mars Center for Cocoa Science, Brazil
Location: 3309 12
 Dapeng Zhang, 2016

22._IMC_14

identical
37 shared markers

Mars Center for Cocoa Science, Brazil
Location: 3309 13
 Dapeng Zhang, 2016

23._IMC_14

identical
37 shared markers

Mars Center for Cocoa Science, Brazil
Location: 3309 16
 Dapeng Zhang, 2016

24._IMC_14

identical
37 shared markers

Mars Center for Cocoa Science, Brazil
Location: 4318 4 > FP
 Dapeng Zhang, 2016

25._IMC_14

identical
36 shared markers

Mars Center for Cocoa Science, Brazil
Location: 3309 10
 Dapeng Zhang, 2016

26._IMC_14

98.6 %
35 shared markers

International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: Marper D600
 Dapeng Zhang, 2016

27._IMC_14 RUQ_1634

96.1 %
38 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

28._IMC_14 RUQ_1634

88.9 %
18 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Lambert Motilal, 2023
Population Assignment: 

29._IMC_14 RUQ_1634

62.5 %
36 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2016

30._IMC_14 GC-03-30-3-9

52.8 %
71 shared markers

Mars Center for Cocoa Science, Brazil
Location: Field: 3, Block: 3, Rep: 9, Tree: 1
Notes: MCCS_Structure_refs_above_0.9membership
 Mars, 2018

31._IMC_14 RUQ_1634

52.8 %
71 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
Notes: Reading_Collection
 Mars, 2018

 


  Key to SNP Markers

1TcSNP1075 2TcSNP534 3TcSNP591 4TcSNP42 5TcSNP418
6TcSNP702 7TcSNP1096 8TcSNP1060 9TcSNP1165 10TcSNP429
11TcSNP75 12TcSNP891 13TcSNP122 14TcSNP316 15TcSNP521
16TcSNP1062 17TcSNP836 18TcSNP878 19TcSNP929 20TcSNP413
21TcSNP653 22TcSNP174 23TcSNP32 24TcSNP372 25TcSNP448
26TcSNP872 27TcSNP953 28TcSNP1034 29TcSNP1175 30TcSNP1111
31TcSNP577 32TcSNP90 33TcSNP998 34TcSNP150 35TcSNP28
36TcSNP751 37TcSNP1484 38TcSNP602 39TcSNP561 40TcSNP894
41TcSNP1063 42TcSNP1126 43TcSNP1270 44TcSNP329 45TcSNP944
46TcSNP1242 47TcSNP1383 48TcSNP547 49TcSNP776 50TcSNP151
51TcSNP1520 52TcSNP799 53TcSNP899 54TcSNP226 55TcSNP1442
56TcSNP193 57TcSNP25 58TcSNP364 59TcSNP144 60TcSNP230
61TcSNP560 62TcSNP723 63TcSNP731 64TcSNP701 65TcSNP1041
66TcSNP917 67Tcm003s01336581 68Tcm006s26664133 69TcSNP529 70TcSNP1458
71TcSNP60 72TcSNP430 73TcSNP619 74TcSNP994 75TcSNP1144
76TcSNP1156 77TcSNP469 78TcSNP999 79TcSNP242 80TcSNP1414
81TcSNP154 82TcSNP240