SNP Profiles of GU-168H   View Data

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 Key

 1 2 3 4 5 6 7 8 9 10 11 12 13 14
_Input profile
AACCCCGGGGCCCCCCCCGGTTCCTTAA
1._GU_168_/H___
AACCCCGGGGCCCCCCCCGGTTCCTTAA
2._GU_168_/H___
AACCCCGGGGCCCCCCCCGGTTCCTTAA
3._GU_168_/H___
AACCCCGGGGCCCCCCCCGGTTCCTTAA
4._GU_168_/H___
AACCCCGGGGCCCCCCCCGGTTCCTTAA
5._GU_168_/H___
AACCCCGGGGCCCCCCCCGGTTCCTTAA
6._GU_168_/H___
AACCCCGGGGCCCCCCCCGGTTCCTTAA
7._GU_168_/H___
AACCCCGGGGCCCCCCCCGGTTCCTTAA
8._GU_168_/H___
AACCCCGGGGCCCCCCCCGGTTCCTTAA
9._GU_168_/H___
AACCCCGGGGCCCCCCCCGGTTCCTTAA
10._GU_168_/H___
AACCCC________CCCCGG__CC____
11._GU_168_/H___
AACCCC________CCCCGG__CC____
12._GU_168_/H___
AACCCC________CCCCGG__CC____
13._GU_168_/H___
AACCCC________CCCCGG__CC____
14._GU_168_/H___
AACCCC________CCCCGG__CC____
15._GU_168_/H___
AACCCC________CCCCGG__CC____
16._GU_168_/H___
AACCCC________CCCCGG__CC____
17._GU_168_/H___
AACCCC________CCCCGG__CC____
18._GU_168_/H___
AACCCC________CCCCGG__CC____
19._GU_168_/H___
AACCCC________CCCCGG__CC____
20._GU_168_/H___
__CCCC____CC__CC____TTCC____
21._GU_168_/H___
AACCCC________CCCCAG__CC____
22._GU_168_/H___
____CC____CC________________
23._GU_168_/H___
AATTCCGGGGCCCCCCCCGGTTCCCTAA
24._GU_168_/H___
AATTCC________CCCCGG__CC____
25._GU_168_/H___
AA__CCGGGG__GGGG__GGAAGGAATT
 15 16 17 18 19 20 21 22 23 24 25 26 27 28
_Input profile
CCGGGGCCGGTTAATTGGTTAACCGGAA
1._GU_168_/H___
CCGGGGCCGGTTAATTGGTTAACCGGAA
2._GU_168_/H___
CCGGGGCCGGTTAATTGGTTAACCGGAA
3._GU_168_/H___
CCGGGGCCGGTTAATTGGTTAACCGGAA
4._GU_168_/H___
CCGGGGCCGGTTAATTGGTTAACCGGAA
5._GU_168_/H___
CCGGGGCCGGTTAATTGGTTAACCGGAA
6._GU_168_/H___
CCGGGGCCGGTTAATTGGTTAACCGGAA
7._GU_168_/H___
CCGGGGCCGGTTAATTGGTTAACCGGAA
8._GU_168_/H___
CCGGGGCCGGTTAATTGGTTAACCGGAA
9._GU_168_/H___
CCGGGGCCGGTTAATTGGTTAACCGGAA
10._GU_168_/H___
__GG____GG________TTAA__GGAA
11._GU_168_/H___
__GG____GG________TTAA__GGAA
12._GU_168_/H___
__GG____GG________TTAA__GGAA
13._GU_168_/H___
__GG____GG________TTAA__GGAA
14._GU_168_/H___
__GG____GG________TTAA__GGAA
15._GU_168_/H___
__GG____GG________TTAA__GGAA
16._GU_168_/H___
__GG____GG________TTAA__GGAA
17._GU_168_/H___
__GG____GG________TTAA__GGAA
18._GU_168_/H___
__GG____GG________TTAA__GGAA
19._GU_168_/H___
__GG____GG________TTAA__GGAA
20._GU_168_/H___
______CC________GG__AACCGG__
21._GU_168_/H___
__GG____GG________ATAA__GGAA
22._GU_168_/H___
__GGCC__________________GG__
23._GU_168_/H___
CCAAGGCCCCTTAATTGGTTAACCGGAA
24._GU_168_/H___
__AA____CC________TTAA__GGAA
25._GU_168_/H___
CCGGCC__GGAAAGAAGGTTAAGGCCAA
 29 30 31 32 33 34 35 36 37 38 39 40 41 42
_Input profile
TTTTGGCCGGTTGGGGGGCCGGCCGGTT
1._GU_168_/H___
TTTTGGCCGGTTGGGGGGCCGGCCGGTT
2._GU_168_/H___
TTTTGGCCGGTTGGGGGGCCGGCCGGTT
3._GU_168_/H___
TTTTGGCCGGTTGGGGGGCCGGCCGGTT
4._GU_168_/H___
TTTTGGCCGGTTGGGGGGCCGGCCGGTT
5._GU_168_/H___
TTTTGGCCGGTTGGGGGGCCGGCCGGTT
6._GU_168_/H___
TTTTGGCCGGTTGGGGGGCCGGCCGGTT
7._GU_168_/H___
TTTTGGCCGGTTGGGGGGCCGGCCGGTT
8._GU_168_/H___
TTTTGGCCGGTTGGGGGGCCGGCCGGTT
9._GU_168_/H___
TTTTGGCCGGTTGGGGGGCCGGCCGGTT
10._GU_168_/H___
________GGTT____GG__________
11._GU_168_/H___
________GGTT____GG__________
12._GU_168_/H___
________GGTT____GG__________
13._GU_168_/H___
________GGTT____GG__________
14._GU_168_/H___
________GGTT____GG__________
15._GU_168_/H___
________GGTT____GG__________
16._GU_168_/H___
________GGTT____GG__________
17._GU_168_/H___
________GGTT____GG__________
18._GU_168_/H___
________GGTT____GG__________
19._GU_168_/H___
________GGTT____GG__________
20._GU_168_/H___
____GGCCAGTT____AGCC____GGTT
21._GU_168_/H___
________AGTT____AG__________
22._GU_168_/H___
________AG________CC________
23._GU_168_/H___
TTGGAACCGGTTGGTTAATTAACCGGTT
24._GU_168_/H___
________GGTT____AA__________
25._GU_168_/H___
AAAAGGCCGGAACCCCGGGGGGGGCC__
 43 44 45 46 47 48 49 50 51 52 53 54 55 56
_Input profile
TTAAGGAACCCCGGGGTTTTTTCCTTGG
1._GU_168_/H___
TTAAGGAACCCCGGGGTTTTTTCCTTGG
2._GU_168_/H___
TTAAGGAACCCCGGGGTTTTTTCCTTGG
3._GU_168_/H___
TTAAGGAACCCCGGGGTTTTTTCCTTGG
4._GU_168_/H___
TTAAGGAACCCCGGGGTTTTTTCCTTGG
5._GU_168_/H___
TTAAGGAACCCCGGGGTTTTTTCCTTGG
6._GU_168_/H___
TTAAGGAACCCCGGGGTTTTTTCCTTGG
7._GU_168_/H___
TTAAGGAACCCCGGGGTTTTTTCCTTGG
8._GU_168_/H___
TTAAGGAACCCCGGGGTTTT__CCTTGG
9._GU_168_/H___
TTAAGGAACCCCGGGGTTTTTTCCTTGG
10._GU_168_/H___
TT__________________TTCC____
11._GU_168_/H___
TT__________________TTCC____
12._GU_168_/H___
TT__________________TTCC____
13._GU_168_/H___
TT__________________TTCC____
14._GU_168_/H___
TT__________________TTCC____
15._GU_168_/H___
TT__________________TTCC____
16._GU_168_/H___
TT__________________TTCC____
17._GU_168_/H___
TT__________________TTCC____
18._GU_168_/H___
TT__________________TTCC____
19._GU_168_/H___
TT____________________CC____
20._GU_168_/H___
____GG____________TTTT__TT__
21._GU_168_/H___
TT__________________TTCC____
22._GU_168_/H___
____GG____________________GG
23._GU_168_/H___
CCAAGGAACCCCGGGGTTTTCCTTTT__
24._GU_168_/H___
CC__________________CCTT____
25._GU_168_/H___
AA__GGAAGG__GGGGAAAAAAGGAAGG
 57 58 59 60 61 62 63 64 65 66 67 68 69 70
_Input profile
CCCCCCAAGGGGAAGGGGGGAACCCCAG
1._GU_168_/H___
CCCCCCAAGGGGAAGGGGGGAACCCCAG
2._GU_168_/H___
CCCCCCAAGGGGAAGGGGGGAACCCCAG
3._GU_168_/H___
CCCCCCAAGGGGAAGGGGGGAACCCCAG
4._GU_168_/H___
CCCCCCAAGGGGAAGGGGGGAACCCCAG
5._GU_168_/H___
CCCCCCAAGGGGAAGGGGGGAACCCCAG
6._GU_168_/H___
CCCCCCAAGGGGAAGGGGGGAACCCCAG
7._GU_168_/H___
CCCCCCAAGGGGAAGGGGGGAACCCCAG
8._GU_168_/H___
CCCCCCAAGGGGAAGGGGGGAACCCCAG
9._GU_168_/H___
CCCCCCAAGGGG__GGGGGGAACCCCAG
10._GU_168_/H___
CC__CCAAGG__AAGGGGGG______AG
11._GU_168_/H___
CC__CCAAGG__AAGGGGGG______AG
12._GU_168_/H___
CC__CCAAGG__AAGGGGGG______AG
13._GU_168_/H___
CC__CCAAGG__AAGGGGGG______AG
14._GU_168_/H___
CC__CCAAGG__AAGGGGGG______AG
15._GU_168_/H___
CC__CCAAGG__AAGGGGGG______AG
16._GU_168_/H___
CC__CCAAGG__AAGGGGGG______AG
17._GU_168_/H___
CC__CCAAGG__AAGGGGGG______AG
18._GU_168_/H___
CC__CCAAGG____GGGGGG______AG
19._GU_168_/H___
CC__CCAAGG__AAGGGGGG______AG
20._GU_168_/H___
CCCCCCAA__GGAAGGGGGGAA______
21._GU_168_/H___
CC__CCAAGG__AAGGGGGG______AA
22._GU_168_/H___
____________AAGG__GGAA____AA
23._GU_168_/H___
CCTTCTAAGGGGACAATTGGGGTTCCGG
24._GU_168_/H___
CC__CTAAGG__ACAATTGG______GG
25._GU_168_/H___
GGGGGGAAGGGGAAGGCCCCAA______
 71 72 73 74 75 76 77 78 79 80 81 82 83 84
_Input profile
CCCCAACCCCGGAACCCCTTAACCCCCC
1._GU_168_/H___
CCCCAACCCCGGAACCCCTTAACCCCCC
2._GU_168_/H___
CCCCAACCCCGGAACCCCTTAACCCCCC
3._GU_168_/H___
CCCCAACCCCGGAACCCCTTAACCCCCC
4._GU_168_/H___
CCCCAACCCCGGAACCCCTTAACCCCCC
5._GU_168_/H___
CCCCAACCCCGGAACCCCTTAACCCCCC
6._GU_168_/H___
CCCCAACCCCGGAACCCCTTAACCCCCC
7._GU_168_/H___
CCCCAACCCCGGAACCCCTTAACCCCCC
8._GU_168_/H___
CCCCAACCCCGGAACCCCTTAACCCCCC
9._GU_168_/H___
CCCCAACCCCGGAACCCCTTAACCCCCC
10._GU_168_/H___
CC__________AACC______CCCCCC
11._GU_168_/H___
CC__________AACC______CCCCCC
12._GU_168_/H___
CC__________AACC______CCCCCC
13._GU_168_/H___
CC__________AACC______CCCCCC
14._GU_168_/H___
CC__________AACC______CCCCCC
15._GU_168_/H___
CC__________AACC______CCCCCC
16._GU_168_/H___
CC__________AACC______CCCCCC
17._GU_168_/H___
CC__________AACC______CCCCCC
18._GU_168_/H___
CC__________AACC______CCCCCC
19._GU_168_/H___
CC__________AACC______CCCCCC
20._GU_168_/H___
____________AAGG____AACC____
21._GU_168_/H___
CC__________AAGG______CCCTCC
22._GU_168_/H___
____________AAGG____AA____CC
23._GU_168_/H___
TTAAAACCAAAACCGGCCTTAATTTTTT
24._GU_168_/H___
TT__________CCGG______TTTTTT
25._GU_168_/H___
GGCCAACCCC__AAGGGGTTAAGGGG__
 85 86 87 88 89 90 91 92       
_Input profile
CCGGCCCCTTTTAAGGX_XX_XX_XX_XX_XX_X
1._GU_168_/H___
CCGGCCCCTTTTAAGGX_XX_XX_XX_XX_XX_X
2._GU_168_/H___
CCGGCCCCTTTTAAGGX_XX_XX_XX_XX_XX_X
3._GU_168_/H___
CCGGCCCCTTTTAAGGX_XX_XX_XX_XX_XX_X
4._GU_168_/H___
CCGGCCCCTTTTAAGGX_XX_XX_XX_XX_XX_X
5._GU_168_/H___
CCGGCCCCTTTTAAGGX_XX_XX_XX_XX_XX_X
6._GU_168_/H___
CCGGCCCCTTTTAAGGX_XX_XX_XX_XX_XX_X
7._GU_168_/H___
CCGGCCCCTTTTAAGGX_XX_XX_XX_XX_XX_X
8._GU_168_/H___
CCGGCCCCTTTTAAGGX_XX_XX_XX_XX_XX_X
9._GU_168_/H___
CCGGCCCCTTTTAAGGX_XX_XX_XX_XX_XX_X
10._GU_168_/H___
__GG__CCTTTT____X_XX_XX_XX_XX_XX_X
11._GU_168_/H___
__GG__CCTTTT____X_XX_XX_XX_XX_XX_X
12._GU_168_/H___
__GG__CCTTTT____X_XX_XX_XX_XX_XX_X
13._GU_168_/H___
__GG__CCTTTT____X_XX_XX_XX_XX_XX_X
14._GU_168_/H___
__GG__CCTTTT____X_XX_XX_XX_XX_XX_X
15._GU_168_/H___
__GG__CCTTTT____X_XX_XX_XX_XX_XX_X
16._GU_168_/H___
__GG__CCTTTT____X_XX_XX_XX_XX_XX_X
17._GU_168_/H___
__GG__CCTTTT____X_XX_XX_XX_XX_XX_X
18._GU_168_/H___
__GG__CCTTTT____X_XX_XX_XX_XX_XX_X
19._GU_168_/H___
__GG__CCTTTT____X_XX_XX_XX_XX_XX_X
20._GU_168_/H___
__AGCCCCTT______X_XX_XX_XX_XX_XX_X
21._GU_168_/H___
__AG__CCTTTT____X_XX_XX_XX_XX_XX_X
22._GU_168_/H___
____CC__TT______X_XX_XX_XX_XX_XX_X
23._GU_168_/H___
TTAATTCCTTTTAAGGX_XX_XX_XX_XX_XX_X
24._GU_168_/H___
__AA__CCTTTT____X_XX_XX_XX_XX_XX_X
25._GU_168_/H___
GG____GGAAAATTGGX_XX_XX_XX_XX_XX_X

Input profile: GU_168_/H GC-03-023-2-12

 
Mars Center for Cocoa Science, Brazil
Location: Tree: 12
Notes: 12 > FP3
 Mars, 2018

1._GU_168_/H GC-03-023-2-12

identical
92 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 15
Notes: 15
 Mars, 2018

2._GU_168_/H GC-03-023-2-12

identical
92 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 13
Notes: 13
 Mars, 2018

3._GU_168_/H GC-03-023-2-12

identical
92 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 10
Notes: 10 > FP1
 Mars, 2018

4._GU_168_/H GC-03-023-2-12

identical
92 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 6
Notes: 6
 Mars, 2018

5._GU_168_/H GC-03-023-2-12

identical
92 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: 4
 Mars, 2018

6._GU_168_/H GC-03-023-2-12

identical
92 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2
 Mars, 2018

7._GU_168_/H GC-03-023-2-12

identical
92 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1 > FP4
 Mars, 2018

8._GU_168_/H GC-03-023-2-12

identical
91 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 7
Notes: 7 > FP3
 Mars, 2018

9._GU_168_/H GC-03-023-2-12

identical
91 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3
 Mars, 2018

10._GU_168_/H

identical
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: 3212 2
 Dapeng Zhang, 2016

11._GU_168_/H

identical
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: 3212 4
 Dapeng Zhang, 2016

12._GU_168_/H

identical
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: 3212 6
 Dapeng Zhang, 2016

13._GU_168_/H

identical
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: 3212 13
 Dapeng Zhang, 2016

14._GU_168_/H

identical
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: 3212 15
 Dapeng Zhang, 2016

15._GU_168_/H

identical
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: 3212 1 > FP
 Dapeng Zhang, 2016

16._GU_168_/H

identical
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: 3212 10 > F
 Dapeng Zhang, 2016

17._GU_168_/H

identical
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: 3212 12 > F
 Dapeng Zhang, 2016

18._GU_168_/H

identical
37 shared markers

Mars Center for Cocoa Science, Brazil
Location: 3212 3
 Dapeng Zhang, 2016

19._GU_168_/H

identical
37 shared markers

Mars Center for Cocoa Science, Brazil
Location: 3212 7 > FP
 Dapeng Zhang, 2016

20._GU_168_/H RUQ_223

93.9 %
41 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

21._GU_168_/H RUQ_223

88.2 %
38 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2016

22._GU_168_/H RUQ_223

85 %
20 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Lambert Motilal, 2023
Population Assignment: 

23._GU_168_/H GC-03-023-2-12

65.9 %
91 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 16
Notes: 16
 Mars, 2018

24._GU_168_/H

53.9 %
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: 3212 16
 Dapeng Zhang, 2016

25._GU_168_/H GC-03-23-2-12

46.8 %
78 shared markers

Mars Center for Cocoa Science, Brazil
Location: Field: 3, Block: 2, Rep: 12, Tree: 2
Notes: MCCS_Structure_refs_above_0.9membership
 Mars, 2018

 


  Key to SNP Markers

1TcSNP1075 2TcSNP534 3TcSNP591 4TcSNP42 5TcSNP418
6TcSNP702 7TcSNP1096 8TcSNP1060 9TcSNP1165 10TcSNP429
11TcSNP75 12TcSNP891 13TcSNP122 14TcSNP316 15TcSNP521
16TcSNP1062 17TcSNP836 18TcSNP878 19TcSNP929 20TcSNP413
21TcSNP653 22TcSNP1149 23TcSNP174 24TcSNP32 25TcSNP372
26TcSNP448 27TcSNP872 28TcSNP953 29TcSNP1034 30TcSNP1175
31TcSNP1111 32TcSNP90 33TcSNP998 34TcSNP150 35TcSNP28
36TcSNP751 37TcSNP1484 38TcSNP602 39TcSNP561 40TcSNP894
41TcSNP1063 42TcSNP1126 43TcSNP1270 44TcSNP606 45TcSNP329
46TcSNP689 47TcSNP944 48TcSNP1242 49TcSNP1383 50TcSNP547
51TcSNP776 52TcSNP1309 53TcSNP151 54TcSNP1520 55TcSNP799
56TcSNP899 57TcSNP226 58TcSNP1439 59TcSNP1442 60TcSNP193
61TcSNP25 62TcSNP364 63TcSNP144 64TcSNP230 65TcSNP560
66TcSNP723 67TcSNP731 68TcSNP701 69TcSNP1041 70TcSNP645
71TcSNP917 72Tcm003s01336581 73Tcm003s07402719 74Tcm001s00947643 75Tcm006s26664133
76Tcm002s20575712 77TcSNP529 78TcSNP1458 79TcSNP60 80TcSNP430
81TcSNP823 82TcSNP619 83TcSNP994 84TcSNP1144 85TcSNP1156
86TcSNP469 87TcSNP999 88TcSNP242 89TcSNP1253 90TcSNP1414
91TcSNP154 92TcSNP240