SNP Profiles of POUND 7 /B   View Data

 Show/Hide Profiles

 Key

 1234567891011121314
_Input profile
AAAACTAAGGGGCCCCCTCCGGTTCTTT
1._GC-01-114-6-11
AAAACTAAGGGGCCCCCTCCGGTTCTTT
2._GC-01-114-6-11
AAAACTAAGGGGCCCCCTCCGGTTCTTT
3._GC-01-114-6-11
AAAACTAAGGGGCCCCCTCCGGTTCTTT
4._GC-01-114-6-11
AAAACTAAGGGGCCCCCTCCGGTTCTTT
5._GC-01-114-6-11
AAAACTAAGGGGCCCCCTCCGGTTCTTT
6._GC-01-114-6-11
AAAACTAAGGGGCCCCCTCCGGTTCTTT
7._GC-01-114-6-11
AAAACTAAGGGGCCCCCTCCGGTTCTTT
8._POUND_7_/B
AAAACTAA____CTCCGG_CT_
9._POUND_7_/B
AAAACTAA____CTCCGG_CT_
10._POUND_7_/B
AAAACTAA____CTCCGG_CT_
11._POUND_7_/B
AAAACTAA____CTCCGG_CT_
12._POUND_7_/B
AAAACTAA____CTCCGG_CT_
13._POUND_7_/B
AAAACTAA____CTCCGG_CT_
14._POUND_7_/B
AAAACTAA____CTCCGG_CT_
15._POUND_7_/B
AAAACTAA____CTCCGG_CT_
16._POUND_7_/B
AAAACTAA____CTCCGG_CT_
17._RUQ_24
AAAACTAA____CTCCGG_CT_
18._RUQ_24
__CTAA__TT_CT__TT-_
19._RUQ_24
AAAA_AAGGGG_GGAG_GGAAAGAA
 1516171819202122232425262728
_Input profile
AAAAGGGGCCGGCTAATTGGTTAACCCC
1._GC-01-114-6-11
AAAAGGGGCCGGCTAATTGGTTAACCCC
2._GC-01-114-6-11
AAAAGGGGCCGGCTAATTGGTTAACCCC
3._GC-01-114-6-11
AAAAGGGGCCGGCTAATTGGTTAACCCC
4._GC-01-114-6-11
AAAAGGGGCCGGCTAATTGGTTAACCCC
5._GC-01-114-6-11
AAAAGGGGCCGGCTAATTGGTTAACCCC
6._GC-01-114-6-11
AAAAGGGGCCGGCTAA_GGTTAACCCC
7._GC-01-114-6-11
AAAAGGGGCCGGCTAATTGGTTAACCCC
8._POUND_7_/B
__GG__GG____TTAA_CC
9._POUND_7_/B
__GG__GG____TTAA_CC
10._POUND_7_/B
__GG__GG____TTAA_CC
11._POUND_7_/B
__GG__GG____TTAA_CC
12._POUND_7_/B
__GG__GG____TTAA_CC
13._POUND_7_/B
__GG__GG____TTAA_CC
14._POUND_7_/B
__GG__GG____TTAA_CC
15._POUND_7_/B
__GG__GG____TTAA_CC
16._POUND_7_/B
__GG__GG____TTAA_CC
17._RUQ_24
__GG__GG____TTAA_CC
18._RUQ_24
____CC____GG_AACCCC
19._RUQ_24
TTAAGGCC_GGAGAAAAGGTTAAGGGG
 2930313233343536373839404142
_Input profile
AATTGGGGGGCCAGGGGGTTAACCGGCC
1._GC-01-114-6-11
AATTGGGGGGCCAGGGGGTTAACCGGCC
2._GC-01-114-6-11
AATTGGGGGGCCAGGGGGTTAACCGGCC
3._GC-01-114-6-11
AATTGGGGGGCCAGGGGGTTAACCGGCC
4._GC-01-114-6-11
AATTGGGGGGCCAGGGGGTTAACCGGCC
5._GC-01-114-6-11
AATTGGGGGGCCAGGGGGTTAACCGGCC
6._GC-01-114-6-11
AATTGGGGGGCCAGGGGGTTAACCGGCC
7._GC-01-114-6-11
AATTGGGGGGCCAGGGGGTTAACCGGCC
8._POUND_7_/B
AA___GG_AGGG__AA___
9._POUND_7_/B
AA___GG_AGGG__AA___
10._POUND_7_/B
AA___GG_AGGG__AA___
11._POUND_7_/B
AA___GG_AGGG__AA___
12._POUND_7_/B
AA___GG_AGGG__AA___
13._POUND_7_/B
AA___GG_AGGG__AA___
14._POUND_7_/B
AA___GG_AGGG__AA___
15._POUND_7_/B
AA___GG_AGGG__AA___
16._POUND_7_/B
AA___GG_AGGG__AA___
17._RUQ_24
AA___GG_AGGG__AG___
18._RUQ_24
___GGGGCCAGGG__AACC__
19._RUQ_24
AAAACCGGGGCCAGCCCCAAAAGGGGGG
 4344454647484950515253545556
_Input profile
GGTTTTAGAGAACCACGGGGGGTTCTCC
1._GC-01-114-6-11
GGTTTTAGAGAACCACGGGGGGTTCTCC
2._GC-01-114-6-11
GGTTTTAGAGAACCACGGGGGGTTCTCC
3._GC-01-114-6-11
GGTTTTAGAGAACCACGGGGGGTTCTCC
4._GC-01-114-6-11
GGTTTTAGAGAACCACGGGGGGTTCTCC
5._GC-01-114-6-11
GGTTTTAGAGAACCACGGGGGGTTCTCC
6._GC-01-114-6-11
GGTTTTAGAGAACCACGGGGGGTTCTCC
7._GC-01-114-6-11
GGTTTTAGAGAACCACGGGGGGTTCTCC
8._POUND_7_/B
__TT_________CTCC
9._POUND_7_/B
__TT_________CTCC
10._POUND_7_/B
__TT_________CTCC
11._POUND_7_/B
__TT_________CTCC
12._POUND_7_/B
__TT_________CTCC
13._POUND_7_/B
__TT_________CTCC
14._POUND_7_/B
__TT_________CTCC
15._POUND_7_/B
__TT_________CTCC
16._POUND_7_/B
__TT_________CTCC
17._RUQ_24
__TT_________CTCC
18._RUQ_24
GGTT__AG______TTCT_
19._RUQ_24
CC_AA_AGAAGG_GGGGCCAAAGGG
 5758596061626364656667686970
_Input profile
TTGGCCCCTTAAGGGGACAAGTGGGGTT
1._GC-01-114-6-11
TTGGCCCCTTAAGGGGACAAGTGGGGTT
2._GC-01-114-6-11
TTGGCCCCTTAAGGGGACAAGTGGGGTT
3._GC-01-114-6-11
TTGGCCCCTTAAGGGGACAAGTGGGGTT
4._GC-01-114-6-11
TTGGCCCCTTAAGGGGACAAGTGGGGTT
5._GC-01-114-6-11
TTGGCCCCTTAAGGGGACAAGTGGGGTT
6._GC-01-114-6-11
TTGGCCCCTTAAGGGGACAAGTGGGGTT
7._GC-01-114-6-11
TTGGCCCCTTAAGGGGACAAGTGGGGTT
8._POUND_7_/B
__CC_TTAAGG_ACAAGTGG__
9._POUND_7_/B
__CC_TTAAGG_ACAAGTGG__
10._POUND_7_/B
__CC_TTAAGG_ACAAGTGG__
11._POUND_7_/B
__CC_TTAAGG_ACAAGTGG__
12._POUND_7_/B
__CC_TTAAGG_ACAAGTGG__
13._POUND_7_/B
__CC_TTAAGG_ACAAGTGG__
14._POUND_7_/B
__CC_TTAAGG_ACAAGTGG__
15._POUND_7_/B
__CC_TTAAGG_ACAAGTGG__
16._POUND_7_/B
__CC_TTAAGG_ACAAGTGG__
17._RUQ_24
__CC_TTAAGG_ACAAGTGG__
18._RUQ_24
TT-CCCCTTAA_GGACAAGTGGGG_
19._RUQ_24
AAGGGGGGAAAAGGGGACAAACCCGG_
 7172737475767778798081828384
_Input profile
CGAACTACAACCCCAACCCCCCAAACCT
1._GC-01-114-6-11
CGAACTACAACCCCAACCCCCCAAACCT
2._GC-01-114-6-11
CGAACTACAACCCCAACCCCCCAAACCT
3._GC-01-114-6-11
CGAACTACAACCCCAACCCCCCAAACCT
4._GC-01-114-6-11
CGAACTACAACCCCAACCCCCCAAACCT
5._GC-01-114-6-11
CGAACTACAACCCCAACCCCCCAAACCT
6._GC-01-114-6-11
CGAACTACAACCCCAACCCCCCAAACCT
7._GC-01-114-6-11
CGAACTAC_CCCCAACCCCCCAAACCT
8._POUND_7_/B
_AACT_____CCCC___CT
9._POUND_7_/B
_AACT_____CCCC___CT
10._POUND_7_/B
_AACT_____CCCC___CT
11._POUND_7_/B
_AACT_____CCCC___CT
12._POUND_7_/B
_AACT_____CCCC___CT
13._POUND_7_/B
_AACT_____CCCC___CT
14._POUND_7_/B
_AACT_____CCCC___CT
15._POUND_7_/B
_AACT_____CCCC___CT
16._POUND_7_/B
_AACT_____CCCC___CT
17._RUQ_24
_AACT_____CCCC___CT
18._RUQ_24
________CCCC__ACCT
19._RUQ_24
__AGACAACCCC_CCGGGGAAACAG
 85868788899091929394    
_Input profile
CTCCTTAACTCTTTTTATGGX_XX_XX_XX_X
1._GC-01-114-6-11
CTCCTTAACTCTTTTTATGGX_XX_XX_XX_X
2._GC-01-114-6-11
CTCCTTAACTCTTTTTATGGX_XX_XX_XX_X
3._GC-01-114-6-11
CTCCTTAACTCTTTTTATGGX_XX_XX_XX_X
4._GC-01-114-6-11
CTCCTTAACTCTTTTTATGGX_XX_XX_XX_X
5._GC-01-114-6-11
CTCCTTAACTCTTTTTATGGX_XX_XX_XX_X
6._GC-01-114-6-11
CTCCTTAACTCTTTTTATGGX_XX_XX_XX_X
7._GC-01-114-6-11
CTCCTTAACTCTTTTTATGGX_XX_XX_XX_X
8._POUND_7_/B
CTCC_AA_CTTTTT__X_XX_XX_XX_X
9._POUND_7_/B
CTCC_AA_CTTTTT__X_XX_XX_XX_X
10._POUND_7_/B
CTCC_AA_CTTTTT__X_XX_XX_XX_X
11._POUND_7_/B
CTCC_AA_CTTTTT__X_XX_XX_XX_X
12._POUND_7_/B
CTCC_AA_CTTTTT__X_XX_XX_XX_X
13._POUND_7_/B
CTCC_AA_CTTTTT__X_XX_XX_XX_X
14._POUND_7_/B
CTCC_AA_CTTTTT__X_XX_XX_XX_X
15._POUND_7_/B
CTCC_AA_CTTTTT__X_XX_XX_XX_X
16._POUND_7_/B
CTCC_AA_CTTTTT__X_XX_XX_XX_X
17._RUQ_24
CTCC_AA_CTTTTT__X_XX_XX_XX_X
18._RUQ_24
___AACCCTTT___X_XX_XX_XX_X
19._RUQ_24
AG_AA__AGAAAAATGGX_XX_XX_XX_X

Input profile: POUND_7_/B GC-01-114-6-11

 
Mars Center for Cocoa Science, Brazil
Location: Tree: 13
Notes: 13
 Mars, 2018

1._POUND_7_/B GC-01-114-6-11

identical
94 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 10
Notes: 10 > FP2
 Mars, 2018

2._POUND_7_/B GC-01-114-6-11

identical
94 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 9
Notes: 9
 Mars, 2018

3._POUND_7_/B GC-01-114-6-11

identical
94 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: 4 > FP3
 Mars, 2018

4._POUND_7_/B GC-01-114-6-11

identical
94 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3
 Mars, 2018

5._POUND_7_/B GC-01-114-6-11

identical
94 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2
 Mars, 2018

6._POUND_7_/B GC-01-114-6-11

identical
93 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 11
Notes: 11 > FP4
 Mars, 2018

7._POUND_7_/B GC-01-114-6-11

identical
93 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1 > FP1
 Mars, 2018

8._POUND_7_/B

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1611 13
 Dapeng Zhang, 2016

9._POUND_7_/B

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1611 4 > FP
 Dapeng Zhang, 2016

10._POUND_7_/B

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1611 11 > F
 Dapeng Zhang, 2016

11._POUND_7_/B

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1611 10 > F
 Dapeng Zhang, 2016

12._POUND_7_/B

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1611 1 > FP
 Dapeng Zhang, 2016

13._POUND_7_/B

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1611 9
 Dapeng Zhang, 2016

14._POUND_7_/B

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1611 3
 Dapeng Zhang, 2016

15._POUND_7_/B

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1611 2
 Dapeng Zhang, 2016
Population Assignment: 
 Dapeng Zhang, 2016

16._POUND_7_/B

identical
40 shared markers

International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: 6B F407 T3
 Dapeng Zhang, 2016

17._POUND_7_/B RUQ_24

98.8 %
40 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2016

18._POUND_7_/B RUQ_24

96.3 %
41 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

19._POUND_7_/B RUQ_24

50 %
80 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
Notes: Reading_Collection
 Mars, 2018

 


  Key to SNP Markers

1TcSNP1075 2TcSNP1350 3TcSNP534 4TcSNP591 5TcSNP42
6TcSNP418 7TcSNP702 8TcSNP1096 9TcSNP1060 10TcSNP1165
11TcSNP429 12TcSNP75 13TcSNP891 14TcSNP122 15TcSNP316
16TcSNP521 17TcSNP1062 18TcSNP836 19TcSNP878 20TcSNP929
21TcSNP413 22TcSNP653 23TcSNP1149 24TcSNP174 25TcSNP32
26TcSNP372 27TcSNP448 28TcSNP872 29TcSNP953 30TcSNP1034
31TcSNP1175 32TcSNP1111 33TcSNP577 34TcSNP90 35TcSNP998
36TcSNP150 37TcSNP28 38TcSNP751 39TcSNP1484 40TcSNP602
41TcSNP561 42TcSNP894 43TcSNP1063 44TcSNP1126 45TcSNP1270
46TcSNP606 47TcSNP329 48TcSNP689 49TcSNP944 50TcSNP1242
51TcSNP1383 52TcSNP547 53TcSNP776 54TcSNP1309 55TcSNP151
56TcSNP1520 57TcSNP799 58TcSNP899 59TcSNP226 60TcSNP1439
61TcSNP1442 62TcSNP193 63TcSNP25 64TcSNP364 65TcSNP144
66TcSNP230 67TcSNP560 68TcSNP723 69TcSNP731 70TcSNP701
71TcSNP1041 72TcSNP645 73TcSNP917 74Tcm003s01336581 75Tcm003s07402719
76Tcm001s00947643 77Tcm006s26664133 78Tcm002s20575712 79TcSNP529 80TcSNP1458
81TcSNP60 82TcSNP430 83TcSNP823 84TcSNP619 85TcSNP994
86TcSNP1144 87TcSNP1156 88TcSNP469 89TcSNP999 90TcSNP242
91TcSNP1253 92TcSNP1414 93TcSNP154 94TcSNP240