SNP Profiles of POUND-7B   View Data

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 1234567891011121314
_Input profile
AAAACTAAGGGGCCCCCTCCGGTTCTTT
1._GC-01-114-6-11
AAAACTAAGGGGCCCCCTCCGGTTCTTT
2._GC-01-114-6-11
AAAACTAAGGGGCCCCCTCCGGTTCTTT
3._GC-01-114-6-11
AAAACTAAGGGGCCCCCTCCGGTTCTTT
4._GC-01-114-6-11
AAAACTAAGGGGCCCCCTCCGGTTCTTT
5._GC-01-114-6-11
AAAACTAAGGGGCCCCCTCCGGTTCTTT
6._GC-01-114-6-11
AAAACTAAGGGGCCCCCTCCGGTTCTTT
7._GC-01-114-6-11
AAAACTAAGGGGCCCCCTCCGGTTCTTT
8._POUND_7_/B
AAAACTAA________CTCCGG__CT__
9._POUND_7_/B
AAAACTAA________CTCCGG__CT__
10._POUND_7_/B
AAAACTAA________CTCCGG__CT__
11._POUND_7_/B
AAAACTAA________CTCCGG__CT__
12._POUND_7_/B
AAAACTAA________CTCCGG__CT__
13._POUND_7_/B
AAAACTAA________CTCCGG__CT__
14._POUND_7_/B
AAAACTAA________CTCCGG__CT__
15._POUND_7_/B
AAAACTAA________CTCCGG__CT__
16._POUND_7_/B
AAAACTAA________CTCCGG__CT__
17._RUQ_24
AAAACTAA________CTCCGG__CT__
18._RUQ_24
____CTAA____TT__CT____TT____
19._RUQ_24
______AA____TT______________
20._RUQ_24B
______AA____TT______________
21._RUQ_24
AAAA__AAGGGG__GGAG__GGAAAGAA
 1516171819202122232425262728
_Input profile
AAAAGGGGCCGGCTAAGGTTAACCCCAA
1._GC-01-114-6-11
AAAAGGGGCCGGCTAAGGTTAACCCCAA
2._GC-01-114-6-11
AAAAGGGGCCGGCTAAGGTTAACCCCAA
3._GC-01-114-6-11
AAAAGGGGCCGGCTAAGGTTAACCCCAA
4._GC-01-114-6-11
AAAAGGGGCCGGCTAAGGTTAACCCCAA
5._GC-01-114-6-11
AAAAGGGGCCGGCTAAGGTTAACCCCAA
6._GC-01-114-6-11
AAAAGGGGCCGGCTAAGGTTAACCCCAA
7._GC-01-114-6-11
AAAAGGGGCCGGCTAAGGTTAACCCCAA
8._POUND_7_/B
____GG____GG______TTAA__CCAA
9._POUND_7_/B
____GG____GG______TTAA__CCAA
10._POUND_7_/B
____GG____GG______TTAA__CCAA
11._POUND_7_/B
____GG____GG______TTAA__CCAA
12._POUND_7_/B
____GG____GG______TTAA__CCAA
13._POUND_7_/B
____GG____GG______TTAA__CCAA
14._POUND_7_/B
____GG____GG______TTAA__CCAA
15._POUND_7_/B
____GG____GG______TTAA__CCAA
16._POUND_7_/B
____GG____GG______TTAA__CCAA
17._RUQ_24
____GG____GG______TTAA__CCAA
18._RUQ_24
________CC______GG__AACCCC__
19._RUQ_24
____GGTT________________CC__
20._RUQ_24B
____GGTT________________CC__
21._RUQ_24
TTAAGGCC__GGAGAAGGTTAAGGGGAA
 2930313233343536373839404142
_Input profile
TTGGGGGGCCAGGGGGTTAACCGGCCGG
1._GC-01-114-6-11
TTGGGGGGCCAGGGGGTTAACCGGCCGG
2._GC-01-114-6-11
TTGGGGGGCCAGGGGGTTAACCGGCCGG
3._GC-01-114-6-11
TTGGGGGGCCAGGGGGTTAACCGGCCGG
4._GC-01-114-6-11
TTGGGGGGCCAGGGGGTTAACCGGCCGG
5._GC-01-114-6-11
TTGGGGGGCCAGGGGGTTAACCGGCCGG
6._GC-01-114-6-11
TTGGGGGGCCAGGGGGTTAACCGGCCGG
7._GC-01-114-6-11
TTGGGGGGCCAGGGGGTTAACCGGCCGG
8._POUND_7_/B
______GG__AGGG____AA________
9._POUND_7_/B
______GG__AGGG____AA________
10._POUND_7_/B
______GG__AGGG____AA________
11._POUND_7_/B
______GG__AGGG____AA________
12._POUND_7_/B
______GG__AGGG____AA________
13._POUND_7_/B
______GG__AGGG____AA________
14._POUND_7_/B
______GG__AGGG____AA________
15._POUND_7_/B
______GG__AGGG____AA________
16._POUND_7_/B
______GG__AGGG____AA________
17._RUQ_24
______GG__AGGG____AG________
18._RUQ_24
____GGGGCCAGGG____AACC____GG
19._RUQ_24
______GG__AG________CC______
20._RUQ_24B
______GG__AG________CC______
21._RUQ_24
AACCGGGGCCAGCCCCAAAAGGGGGGCC
 4344454647484950515253545556
_Input profile
TTTTAGAGAACCACGGGGGGTTCTCCTT
1._GC-01-114-6-11
TTTTAGAGAACCACGGGGGGTTCTCCTT
2._GC-01-114-6-11
TTTTAGAGAACCACGGGGGGTTCTCCTT
3._GC-01-114-6-11
TTTTAGAGAACCACGGGGGGTTCTCCTT
4._GC-01-114-6-11
TTTTAGAGAACCACGGGGGGTTCTCCTT
5._GC-01-114-6-11
TTTTAGAGAACCACGGGGGGTTCTCCTT
6._GC-01-114-6-11
TTTTAGAGAACCACGGGGGGTTCTCCTT
7._GC-01-114-6-11
TTTTAGAGAACCACGGGGGGTTCTCCTT
8._POUND_7_/B
__TT__________________CTCC__
9._POUND_7_/B
__TT__________________CTCC__
10._POUND_7_/B
__TT__________________CTCC__
11._POUND_7_/B
__TT__________________CTCC__
12._POUND_7_/B
__TT__________________CTCC__
13._POUND_7_/B
__TT__________________CTCC__
14._POUND_7_/B
__TT__________________CTCC__
15._POUND_7_/B
__TT__________________CTCC__
16._POUND_7_/B
__TT__________________CTCC__
17._RUQ_24
__TT__________________CTCC__
18._RUQ_24
TT____AG____________TTCT__TT
19._RUQ_24
______AG____________________
20._RUQ_24B
______AG____________________
21._RUQ_24
__AA__AGAAGG__GGGGCCAAAGGGAA
 5758596061626364656667686970
_Input profile
GGCCCCTTAAGGGGACAAGTGGGGTTCG
1._GC-01-114-6-11
GGCCCCTTAAGGGGACAAGTGGGGTTCG
2._GC-01-114-6-11
GGCCCCTTAAGGGGACAAGTGGGGTTCG
3._GC-01-114-6-11
GGCCCCTTAAGGGGACAAGTGGGGTTCG
4._GC-01-114-6-11
GGCCCCTTAAGGGGACAAGTGGGGTTCG
5._GC-01-114-6-11
GGCCCCTTAAGGGGACAAGTGGGGTTCG
6._GC-01-114-6-11
GGCCCCTTAAGGGGACAAGTGGGGTTCG
7._GC-01-114-6-11
GGCCCCTTAAGGGGACAAGTGGGGTTCG
8._POUND_7_/B
__CC__TTAAGG__ACAAGTGG______
9._POUND_7_/B
__CC__TTAAGG__ACAAGTGG______
10._POUND_7_/B
__CC__TTAAGG__ACAAGTGG______
11._POUND_7_/B
__CC__TTAAGG__ACAAGTGG______
12._POUND_7_/B
__CC__TTAAGG__ACAAGTGG______
13._POUND_7_/B
__CC__TTAAGG__ACAAGTGG______
14._POUND_7_/B
__CC__TTAAGG__ACAAGTGG______
15._POUND_7_/B
__CC__TTAAGG__ACAAGTGG______
16._POUND_7_/B
__CC__TTAAGG__ACAAGTGG______
17._RUQ_24
__CC__TTAAGG__ACAAGTGG______
18._RUQ_24
__CCCCTTAA__GGACAAGTGGGG____
19._RUQ_24
GG____________ACAA__GGGG____
20._RUQ_24B
GG____________ACAA__GGGG____
21._RUQ_24
GGGGGGAAAAGGGGACAAACCCGG____
 7172737475767778798081828384
_Input profile
AACTACAACCCCAACCCCCCAAACCTCT
1._GC-01-114-6-11
AACTACAACCCCAACCCCCCAAACCTCT
2._GC-01-114-6-11
AACTACAACCCCAACCCCCCAAACCTCT
3._GC-01-114-6-11
AACTACAACCCCAACCCCCCAAACCTCT
4._GC-01-114-6-11
AACTACAACCCCAACCCCCCAAACCTCT
5._GC-01-114-6-11
AACTACAACCCCAACCCCCCAAACCTCT
6._GC-01-114-6-11
AACTACAACCCCAACCCCCCAAACCTCT
7._GC-01-114-6-11
AACTAC__CCCCAACCCCCCAAACCTCT
8._POUND_7_/B
AACT__________CCCC______CTCT
9._POUND_7_/B
AACT__________CCCC______CTCT
10._POUND_7_/B
AACT__________CCCC______CTCT
11._POUND_7_/B
AACT__________CCCC______CTCT
12._POUND_7_/B
AACT__________CCCC______CTCT
13._POUND_7_/B
AACT__________CCCC______CTCT
14._POUND_7_/B
AACT__________CCCC______CTCT
15._POUND_7_/B
AACT__________CCCC______CTCT
16._POUND_7_/B
AACT__________CCCC______CTCT
17._RUQ_24
AACT__________CCCC______CTCT
18._RUQ_24
______________CCCC____ACCT__
19._RUQ_24
AA______________CC____AC____
20._RUQ_24B
AA______________CC____AC____
21._RUQ_24
__AGACAACCCC__CCGGGGAAACAGAG
 858687888990919293     
_Input profile
CCTTAACTCTTTTTATGGX_XX_XX_XX_XX_X
1._GC-01-114-6-11
CCTTAACTCTTTTTATGGX_XX_XX_XX_XX_X
2._GC-01-114-6-11
CCTTAACTCTTTTTATGGX_XX_XX_XX_XX_X
3._GC-01-114-6-11
CCTTAACTCTTTTTATGGX_XX_XX_XX_XX_X
4._GC-01-114-6-11
CCTTAACTCTTTTTATGGX_XX_XX_XX_XX_X
5._GC-01-114-6-11
CCTTAACTCTTTTTATGGX_XX_XX_XX_XX_X
6._GC-01-114-6-11
CCTTAACTCTTTTTATGGX_XX_XX_XX_XX_X
7._GC-01-114-6-11
CCTTAACTCTTTTTATGGX_XX_XX_XX_XX_X
8._POUND_7_/B
CC__AA__CTTTTT____X_XX_XX_XX_XX_X
9._POUND_7_/B
CC__AA__CTTTTT____X_XX_XX_XX_XX_X
10._POUND_7_/B
CC__AA__CTTTTT____X_XX_XX_XX_XX_X
11._POUND_7_/B
CC__AA__CTTTTT____X_XX_XX_XX_XX_X
12._POUND_7_/B
CC__AA__CTTTTT____X_XX_XX_XX_XX_X
13._POUND_7_/B
CC__AA__CTTTTT____X_XX_XX_XX_XX_X
14._POUND_7_/B
CC__AA__CTTTTT____X_XX_XX_XX_XX_X
15._POUND_7_/B
CC__AA__CTTTTT____X_XX_XX_XX_XX_X
16._POUND_7_/B
CC__AA__CTTTTT____X_XX_XX_XX_XX_X
17._RUQ_24
CC__AA__CTTTTT____X_XX_XX_XX_XX_X
18._RUQ_24
____AACCCTTT______X_XX_XX_XX_XX_X
19._RUQ_24
CC____CT__TT______X_XX_XX_XX_XX_X
20._RUQ_24B
CC____CT__TT______X_XX_XX_XX_XX_X
21._RUQ_24
__AA____AGAAAAATGGX_XX_XX_XX_XX_X

Input profile: POUND_7_/B GC-01-114-6-11

 
Mars Center for Cocoa Science, Brazil
Location: Tree: 11
Notes: 11 > FP4
 Mars, 2018

1._POUND_7_/B GC-01-114-6-11

identical
93 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2
 Mars, 2018

2._POUND_7_/B GC-01-114-6-11

identical
93 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3
 Mars, 2018

3._POUND_7_/B GC-01-114-6-11

identical
93 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: 4 > FP3
 Mars, 2018

4._POUND_7_/B GC-01-114-6-11

identical
93 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 9
Notes: 9
 Mars, 2018

5._POUND_7_/B GC-01-114-6-11

identical
93 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 10
Notes: 10 > FP2
 Mars, 2018

6._POUND_7_/B GC-01-114-6-11

identical
93 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 13
Notes: 13
 Mars, 2018

7._POUND_7_/B GC-01-114-6-11

identical
92 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1 > FP1
 Mars, 2018

8._POUND_7_/B

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1611 3
 Dapeng Zhang, 2016

9._POUND_7_/B

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1611 4 > FP
 Dapeng Zhang, 2016

10._POUND_7_/B

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1611 11 > F
 Dapeng Zhang, 2016

11._POUND_7_/B

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1611 10 > F
 Dapeng Zhang, 2016

12._POUND_7_/B

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1611 1 > FP
 Dapeng Zhang, 2016

13._POUND_7_/B

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1611 13
 Dapeng Zhang, 2016

14._POUND_7_/B

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1611 9
 Dapeng Zhang, 2016

15._POUND_7_/B

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1611 2
 Dapeng Zhang, 2016
Population Assignment: 
 Dapeng Zhang, 2016

16._POUND_7_/B

identical
40 shared markers

International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: 6B F407 T3
 Dapeng Zhang, 2016

17._POUND_7_/B RUQ_24

98.8 %
40 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2016

18._POUND_7_/B RUQ_24

96.3 %
41 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

19._POUND_7_/B RUQ_24

90 %
20 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Lambert Motilal, 2023

20._POUND_7_/B RUQ_24B

90 %
20 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Lambert Motilal, 2023

21._POUND_7_/B RUQ_24

50.6 %
79 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
Notes: Reading_Collection
 Mars, 2018

 


  Key to SNP Markers

1TcSNP1075 2TcSNP1350 3TcSNP534 4TcSNP591 5TcSNP42
6TcSNP418 7TcSNP702 8TcSNP1096 9TcSNP1060 10TcSNP1165
11TcSNP429 12TcSNP75 13TcSNP891 14TcSNP122 15TcSNP316
16TcSNP521 17TcSNP1062 18TcSNP836 19TcSNP878 20TcSNP929
21TcSNP413 22TcSNP653 23TcSNP174 24TcSNP32 25TcSNP372
26TcSNP448 27TcSNP872 28TcSNP953 29TcSNP1034 30TcSNP1175
31TcSNP1111 32TcSNP577 33TcSNP90 34TcSNP998 35TcSNP150
36TcSNP28 37TcSNP751 38TcSNP1484 39TcSNP602 40TcSNP561
41TcSNP894 42TcSNP1063 43TcSNP1126 44TcSNP1270 45TcSNP606
46TcSNP329 47TcSNP689 48TcSNP944 49TcSNP1242 50TcSNP1383
51TcSNP547 52TcSNP776 53TcSNP1309 54TcSNP151 55TcSNP1520
56TcSNP799 57TcSNP899 58TcSNP226 59TcSNP1439 60TcSNP1442
61TcSNP193 62TcSNP25 63TcSNP364 64TcSNP144 65TcSNP230
66TcSNP560 67TcSNP723 68TcSNP731 69TcSNP701 70TcSNP1041
71TcSNP645 72TcSNP917 73Tcm003s01336581 74Tcm003s07402719 75Tcm001s00947643
76Tcm006s26664133 77Tcm002s20575712 78TcSNP529 79TcSNP1458 80TcSNP60
81TcSNP430 82TcSNP823 83TcSNP619 84TcSNP994 85TcSNP1144
86TcSNP1156 87TcSNP469 88TcSNP999 89TcSNP242 90TcSNP1253
91TcSNP1414 92TcSNP154 93TcSNP240