SNP Profiles of POUND 7 /B   View Data

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 Key

 1234567891011121314
_Input profile
AAAACTAAGGGGCCCCCTCCGGTTCTTT
1._GC-01-114-6-11
AAAACTAAGGGGCCCCCTCCGGTTCTTT
2._GC-01-114-6-11
AAAACTAAGGGGCCCCCTCCGGTTCTTT
3._GC-01-114-6-11
AAAACTAAGGGGCCCCCTCCGGTTCTTT
4._GC-01-114-6-11
AAAACTAAGGGGCCCCCTCCGGTTCTTT
5._GC-01-114-6-11
AAAACTAAGGGGCCCCCTCCGGTTCTTT
6._GC-01-114-6-11
AAAACTAAGGGGCCCCCTCCGGTTCTTT
7._GC-01-114-6-11
AAAACTAAGGGGCCCCCTCCGGTTCTTT
8._POUND_7_/B
AAAACTAA____CTCCGG_CT_
9._POUND_7_/B
AAAACTAA____CTCCGG_CT_
10._POUND_7_/B
AAAACTAA____CTCCGG_CT_
11._POUND_7_/B
AAAACTAA____CTCCGG_CT_
12._POUND_7_/B
AAAACTAA____CTCCGG_CT_
13._POUND_7_/B
AAAACTAA____CTCCGG_CT_
14._POUND_7_/B
AAAACTAA____CTCCGG_CT_
15._POUND_7_/B
AAAACTAA____CTCCGG_CT_
16._POUND_7_/B
AAAACTAA____CTCCGG_CT_
17._RUQ_24
AAAACTAA____CTCCGG_CT_
18._RUQ_24
__CTAA__TT_CT__TT-_
19._RUQ_24
AAAA_AAGGGG_GGAG_GGAAAGAA
 1516171819202122232425262728
_Input profile
AAAAGGGGCCGGCTAAGGTTAACCCCAA
1._GC-01-114-6-11
AAAAGGGGCCGGCTAAGGTTAACCCCAA
2._GC-01-114-6-11
AAAAGGGGCCGGCTAAGGTTAACCCCAA
3._GC-01-114-6-11
AAAAGGGGCCGGCTAAGGTTAACCCCAA
4._GC-01-114-6-11
AAAAGGGGCCGGCTAAGGTTAACCCCAA
5._GC-01-114-6-11
AAAAGGGGCCGGCTAAGGTTAACCCCAA
6._GC-01-114-6-11
AAAAGGGGCCGGCTAAGGTTAACCCCAA
7._GC-01-114-6-11
AAAAGGGGCCGGCTAAGGTTAACCCCAA
8._POUND_7_/B
__GG__GG___TTAA_CCAA
9._POUND_7_/B
__GG__GG___TTAA_CCAA
10._POUND_7_/B
__GG__GG___TTAA_CCAA
11._POUND_7_/B
__GG__GG___TTAA_CCAA
12._POUND_7_/B
__GG__GG___TTAA_CCAA
13._POUND_7_/B
__GG__GG___TTAA_CCAA
14._POUND_7_/B
__GG__GG___TTAA_CCAA
15._POUND_7_/B
__GG__GG___TTAA_CCAA
16._POUND_7_/B
__GG__GG___TTAA_CCAA
17._RUQ_24
__GG__GG___TTAA_CCAA
18._RUQ_24
____CC___GG_AACCCC_
19._RUQ_24
TTAAGGCC_GGAGAAGGTTAAGGGGAA
 2930313233343536373839404142
_Input profile
TTGGGGGGCCAGGGGGTTAACCGGCCGG
1._GC-01-114-6-11
TTGGGGGGCCAGGGGGTTAACCGGCCGG
2._GC-01-114-6-11
TTGGGGGGCCAGGGGGTTAACCGGCCGG
3._GC-01-114-6-11
TTGGGGGGCCAGGGGGTTAACCGGCCGG
4._GC-01-114-6-11
TTGGGGGGCCAGGGGGTTAACCGGCCGG
5._GC-01-114-6-11
TTGGGGGGCCAGGGGGTTAACCGGCCGG
6._GC-01-114-6-11
TTGGGGGGCCAGGGGGTTAACCGGCCGG
7._GC-01-114-6-11
TTGGGGGGCCAGGGGGTTAACCGGCCGG
8._POUND_7_/B
___GG_AGGG__AA____
9._POUND_7_/B
___GG_AGGG__AA____
10._POUND_7_/B
___GG_AGGG__AA____
11._POUND_7_/B
___GG_AGGG__AA____
12._POUND_7_/B
___GG_AGGG__AA____
13._POUND_7_/B
___GG_AGGG__AA____
14._POUND_7_/B
___GG_AGGG__AA____
15._POUND_7_/B
___GG_AGGG__AA____
16._POUND_7_/B
___GG_AGGG__AA____
17._RUQ_24
___GG_AGGG__AG____
18._RUQ_24
__GGGGCCAGGG__AACC__GG
19._RUQ_24
AACCGGGGCCAGCCCCAAAAGGGGGGCC
 4344454647484950515253545556
_Input profile
TTTTAGAGAACCACGGGGGGTTCTCCTT
1._GC-01-114-6-11
TTTTAGAGAACCACGGGGGGTTCTCCTT
2._GC-01-114-6-11
TTTTAGAGAACCACGGGGGGTTCTCCTT
3._GC-01-114-6-11
TTTTAGAGAACCACGGGGGGTTCTCCTT
4._GC-01-114-6-11
TTTTAGAGAACCACGGGGGGTTCTCCTT
5._GC-01-114-6-11
TTTTAGAGAACCACGGGGGGTTCTCCTT
6._GC-01-114-6-11
TTTTAGAGAACCACGGGGGGTTCTCCTT
7._GC-01-114-6-11
TTTTAGAGAACCACGGGGGGTTCTCCTT
8._POUND_7_/B
_TT_________CTCC_
9._POUND_7_/B
_TT_________CTCC_
10._POUND_7_/B
_TT_________CTCC_
11._POUND_7_/B
_TT_________CTCC_
12._POUND_7_/B
_TT_________CTCC_
13._POUND_7_/B
_TT_________CTCC_
14._POUND_7_/B
_TT_________CTCC_
15._POUND_7_/B
_TT_________CTCC_
16._POUND_7_/B
_TT_________CTCC_
17._RUQ_24
_TT_________CTCC_
18._RUQ_24
TT__AG______TTCT_TT
19._RUQ_24
_AA_AGAAGG_GGGGCCAAAGGGAA
 5758596061626364656667686970
_Input profile
GGCCCCTTAAGGGGACAAGTGGGGTTCG
1._GC-01-114-6-11
GGCCCCTTAAGGGGACAAGTGGGGTTCG
2._GC-01-114-6-11
GGCCCCTTAAGGGGACAAGTGGGGTTCG
3._GC-01-114-6-11
GGCCCCTTAAGGGGACAAGTGGGGTTCG
4._GC-01-114-6-11
GGCCCCTTAAGGGGACAAGTGGGGTTCG
5._GC-01-114-6-11
GGCCCCTTAAGGGGACAAGTGGGGTTCG
6._GC-01-114-6-11
GGCCCCTTAAGGGGACAAGTGGGGTTCG
7._GC-01-114-6-11
GGCCCCTTAAGGGGACAAGTGGGGTTCG
8._POUND_7_/B
_CC_TTAAGG_ACAAGTGG___
9._POUND_7_/B
_CC_TTAAGG_ACAAGTGG___
10._POUND_7_/B
_CC_TTAAGG_ACAAGTGG___
11._POUND_7_/B
_CC_TTAAGG_ACAAGTGG___
12._POUND_7_/B
_CC_TTAAGG_ACAAGTGG___
13._POUND_7_/B
_CC_TTAAGG_ACAAGTGG___
14._POUND_7_/B
_CC_TTAAGG_ACAAGTGG___
15._POUND_7_/B
_CC_TTAAGG_ACAAGTGG___
16._POUND_7_/B
_CC_TTAAGG_ACAAGTGG___
17._RUQ_24
_CC_TTAAGG_ACAAGTGG___
18._RUQ_24
-CCCCTTAA_GGACAAGTGGGG__
19._RUQ_24
GGGGGGAAAAGGGGACAAACCCGG__
 7172737475767778798081828384
_Input profile
AACTACAACCCCAACCCCCCAAACCTCT
1._GC-01-114-6-11
AACTACAACCCCAACCCCCCAAACCTCT
2._GC-01-114-6-11
AACTACAACCCCAACCCCCCAAACCTCT
3._GC-01-114-6-11
AACTACAACCCCAACCCCCCAAACCTCT
4._GC-01-114-6-11
AACTACAACCCCAACCCCCCAAACCTCT
5._GC-01-114-6-11
AACTACAACCCCAACCCCCCAAACCTCT
6._GC-01-114-6-11
AACTACAACCCCAACCCCCCAAACCTCT
7._GC-01-114-6-11
AACTAC_CCCCAACCCCCCAAACCTCT
8._POUND_7_/B
AACT_____CCCC___CTCT
9._POUND_7_/B
AACT_____CCCC___CTCT
10._POUND_7_/B
AACT_____CCCC___CTCT
11._POUND_7_/B
AACT_____CCCC___CTCT
12._POUND_7_/B
AACT_____CCCC___CTCT
13._POUND_7_/B
AACT_____CCCC___CTCT
14._POUND_7_/B
AACT_____CCCC___CTCT
15._POUND_7_/B
AACT_____CCCC___CTCT
16._POUND_7_/B
AACT_____CCCC___CTCT
17._RUQ_24
AACT_____CCCC___CTCT
18._RUQ_24
_______CCCC__ACCT_
19._RUQ_24
_AGACAACCCC_CCGGGGAAACAGAG
 858687888990919293     
_Input profile
CCTTAACTCTTTTTATGGX_XX_XX_XX_XX_X
1._GC-01-114-6-11
CCTTAACTCTTTTTATGGX_XX_XX_XX_XX_X
2._GC-01-114-6-11
CCTTAACTCTTTTTATGGX_XX_XX_XX_XX_X
3._GC-01-114-6-11
CCTTAACTCTTTTTATGGX_XX_XX_XX_XX_X
4._GC-01-114-6-11
CCTTAACTCTTTTTATGGX_XX_XX_XX_XX_X
5._GC-01-114-6-11
CCTTAACTCTTTTTATGGX_XX_XX_XX_XX_X
6._GC-01-114-6-11
CCTTAACTCTTTTTATGGX_XX_XX_XX_XX_X
7._GC-01-114-6-11
CCTTAACTCTTTTTATGGX_XX_XX_XX_XX_X
8._POUND_7_/B
CC_AA_CTTTTT__X_XX_XX_XX_XX_X
9._POUND_7_/B
CC_AA_CTTTTT__X_XX_XX_XX_XX_X
10._POUND_7_/B
CC_AA_CTTTTT__X_XX_XX_XX_XX_X
11._POUND_7_/B
CC_AA_CTTTTT__X_XX_XX_XX_XX_X
12._POUND_7_/B
CC_AA_CTTTTT__X_XX_XX_XX_XX_X
13._POUND_7_/B
CC_AA_CTTTTT__X_XX_XX_XX_XX_X
14._POUND_7_/B
CC_AA_CTTTTT__X_XX_XX_XX_XX_X
15._POUND_7_/B
CC_AA_CTTTTT__X_XX_XX_XX_XX_X
16._POUND_7_/B
CC_AA_CTTTTT__X_XX_XX_XX_XX_X
17._RUQ_24
CC_AA_CTTTTT__X_XX_XX_XX_XX_X
18._RUQ_24
__AACCCTTT___X_XX_XX_XX_XX_X
19._RUQ_24
_AA__AGAAAAATGGX_XX_XX_XX_XX_X

Input profile: POUND_7_/B GC-01-114-6-11

 
Mars Center for Cocoa Science, Brazil
Location: Tree: 11
Notes: 11 > FP4
 Mars, 2018

1._POUND_7_/B GC-01-114-6-11

identical
93 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 13
Notes: 13
 Mars, 2018

2._POUND_7_/B GC-01-114-6-11

identical
93 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 10
Notes: 10 > FP2
 Mars, 2018

3._POUND_7_/B GC-01-114-6-11

identical
93 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 9
Notes: 9
 Mars, 2018

4._POUND_7_/B GC-01-114-6-11

identical
93 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: 4 > FP3
 Mars, 2018

5._POUND_7_/B GC-01-114-6-11

identical
93 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3
 Mars, 2018

6._POUND_7_/B GC-01-114-6-11

identical
93 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2
 Mars, 2018

7._POUND_7_/B GC-01-114-6-11

identical
92 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1 > FP1
 Mars, 2018

8._POUND_7_/B

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1611 13
 Dapeng Zhang, 2016

9._POUND_7_/B

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1611 4 > FP
 Dapeng Zhang, 2016

10._POUND_7_/B

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1611 11 > F
 Dapeng Zhang, 2016

11._POUND_7_/B

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1611 10 > F
 Dapeng Zhang, 2016

12._POUND_7_/B

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1611 1 > FP
 Dapeng Zhang, 2016

13._POUND_7_/B

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1611 9
 Dapeng Zhang, 2016

14._POUND_7_/B

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1611 3
 Dapeng Zhang, 2016

15._POUND_7_/B

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1611 2
 Dapeng Zhang, 2016
Population Assignment: 
 Dapeng Zhang, 2016

16._POUND_7_/B

identical
40 shared markers

International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: 6B F407 T3
 Dapeng Zhang, 2016

17._POUND_7_/B RUQ_24

98.8 %
40 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2016

18._POUND_7_/B RUQ_24

96.3 %
41 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

19._POUND_7_/B RUQ_24

50.6 %
79 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
Notes: Reading_Collection
 Mars, 2018

 


  Key to SNP Markers

1TcSNP1075 2TcSNP1350 3TcSNP534 4TcSNP591 5TcSNP42
6TcSNP418 7TcSNP702 8TcSNP1096 9TcSNP1060 10TcSNP1165
11TcSNP429 12TcSNP75 13TcSNP891 14TcSNP122 15TcSNP316
16TcSNP521 17TcSNP1062 18TcSNP836 19TcSNP878 20TcSNP929
21TcSNP413 22TcSNP653 23TcSNP174 24TcSNP32 25TcSNP372
26TcSNP448 27TcSNP872 28TcSNP953 29TcSNP1034 30TcSNP1175
31TcSNP1111 32TcSNP577 33TcSNP90 34TcSNP998 35TcSNP150
36TcSNP28 37TcSNP751 38TcSNP1484 39TcSNP602 40TcSNP561
41TcSNP894 42TcSNP1063 43TcSNP1126 44TcSNP1270 45TcSNP606
46TcSNP329 47TcSNP689 48TcSNP944 49TcSNP1242 50TcSNP1383
51TcSNP547 52TcSNP776 53TcSNP1309 54TcSNP151 55TcSNP1520
56TcSNP799 57TcSNP899 58TcSNP226 59TcSNP1439 60TcSNP1442
61TcSNP193 62TcSNP25 63TcSNP364 64TcSNP144 65TcSNP230
66TcSNP560 67TcSNP723 68TcSNP731 69TcSNP701 70TcSNP1041
71TcSNP645 72TcSNP917 73Tcm003s01336581 74Tcm003s07402719 75Tcm001s00947643
76Tcm006s26664133 77Tcm002s20575712 78TcSNP529 79TcSNP1458 80TcSNP60
81TcSNP430 82TcSNP823 83TcSNP619 84TcSNP994 85TcSNP1144
86TcSNP1156 87TcSNP469 88TcSNP999 89TcSNP242 90TcSNP1253
91TcSNP1414 92TcSNP154 93TcSNP240