SNP Profiles of POUND 7 /B   View Data

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 Key

 1 2 3 4 5 6 7 8 9 10 11 12 13 14
_Input profile
AAAACTAAGGGGCCCCCTCCGGTTCTTT
1._GC-01-114-6-11
AAAACTAAGGGGCCCCCTCCGGTTCTTT
2._GC-01-114-6-11
AAAACTAAGGGGCCCCCTCCGGTTCTTT
3._GC-01-114-6-11
AAAACTAAGGGGCCCCCTCCGGTTCTTT
4._GC-01-114-6-11
AAAACTAAGGGGCCCCCTCCGGTTCTTT
5._GC-01-114-6-11
AAAACTAAGGGGCCCCCTCCGGTTCTTT
6._GC-01-114-6-11
AAAACTAAGGGGCCCCCTCCGGTTCTTT
7._GC-01-114-6-11
AAAACTAAGGGGCCCCCTCCGGTTCTTT
8._POUND_7_/B
AAAACTAA________CTCCGG__CT__
9._POUND_7_/B
AAAACTAA________CTCCGG__CT__
10._POUND_7_/B
AAAACTAA________CTCCGG__CT__
11._POUND_7_/B
AAAACTAA________CTCCGG__CT__
12._POUND_7_/B
AAAACTAA________CTCCGG__CT__
13._POUND_7_/B
AAAACTAA________CTCCGG__CT__
14._POUND_7_/B
AAAACTAA________CTCCGG__CT__
15._POUND_7_/B
AAAACTAA________CTCCGG__CT__
16._POUND_7_/B
AAAACTAA________CTCCGG__CT__
17._RUQ_24
AAAACTAA________CTCCGG__CT__
18._RUQ_24
____CTAA____TT__CT____TT____
19._RUQ_24
______AA____TT______________
20._RUQ_24B
______AA____TT______________
21._RUQ_24
AAAA__AAGGGG__GGAG__GGAAAGAA
 15 16 17 18 19 20 21 22 23 24 25 26 27 28
_Input profile
AAAAGGGGCCGGCTAATTGGTTAACCCC
1._GC-01-114-6-11
AAAAGGGGCCGGCTAATTGGTTAACCCC
2._GC-01-114-6-11
AAAAGGGGCCGGCTAATTGGTTAACCCC
3._GC-01-114-6-11
AAAAGGGGCCGGCTAATTGGTTAACCCC
4._GC-01-114-6-11
AAAAGGGGCCGGCTAATTGGTTAACCCC
5._GC-01-114-6-11
AAAAGGGGCCGGCTAATTGGTTAACCCC
6._GC-01-114-6-11
AAAAGGGGCCGGCTAATTGGTTAACCCC
7._GC-01-114-6-11
AAAAGGGGCCGGCTAA__GGTTAACCCC
8._POUND_7_/B
____GG____GG________TTAA__CC
9._POUND_7_/B
____GG____GG________TTAA__CC
10._POUND_7_/B
____GG____GG________TTAA__CC
11._POUND_7_/B
____GG____GG________TTAA__CC
12._POUND_7_/B
____GG____GG________TTAA__CC
13._POUND_7_/B
____GG____GG________TTAA__CC
14._POUND_7_/B
____GG____GG________TTAA__CC
15._POUND_7_/B
____GG____GG________TTAA__CC
16._POUND_7_/B
____GG____GG________TTAA__CC
17._RUQ_24
____GG____GG________TTAA__CC
18._RUQ_24
________CC________GG__AACCCC
19._RUQ_24
____GGTT__________________CC
20._RUQ_24B
____GGTT__________________CC
21._RUQ_24
TTAAGGCC__GGAGAAAAGGTTAAGGGG
 29 30 31 32 33 34 35 36 37 38 39 40 41 42
_Input profile
AATTGGGGGGCCAGGGGGTTAACCGGCC
1._GC-01-114-6-11
AATTGGGGGGCCAGGGGGTTAACCGGCC
2._GC-01-114-6-11
AATTGGGGGGCCAGGGGGTTAACCGGCC
3._GC-01-114-6-11
AATTGGGGGGCCAGGGGGTTAACCGGCC
4._GC-01-114-6-11
AATTGGGGGGCCAGGGGGTTAACCGGCC
5._GC-01-114-6-11
AATTGGGGGGCCAGGGGGTTAACCGGCC
6._GC-01-114-6-11
AATTGGGGGGCCAGGGGGTTAACCGGCC
7._GC-01-114-6-11
AATTGGGGGGCCAGGGGGTTAACCGGCC
8._POUND_7_/B
AA______GG__AGGG____AA______
9._POUND_7_/B
AA______GG__AGGG____AA______
10._POUND_7_/B
AA______GG__AGGG____AA______
11._POUND_7_/B
AA______GG__AGGG____AA______
12._POUND_7_/B
AA______GG__AGGG____AA______
13._POUND_7_/B
AA______GG__AGGG____AA______
14._POUND_7_/B
AA______GG__AGGG____AA______
15._POUND_7_/B
AA______GG__AGGG____AA______
16._POUND_7_/B
AA______GG__AGGG____AA______
17._RUQ_24
AA______GG__AGGG____AG______
18._RUQ_24
______GGGGCCAGGG____AACC____
19._RUQ_24
________GG__AG________CC____
20._RUQ_24B
________GG__AG________CC____
21._RUQ_24
AAAACCGGGGCCAGCCCCAAAAGGGGGG
 43 44 45 46 47 48 49 50 51 52 53 54 55 56
_Input profile
GGTTTTAGAGAACCACGGGGGGTTCTCC
1._GC-01-114-6-11
GGTTTTAGAGAACCACGGGGGGTTCTCC
2._GC-01-114-6-11
GGTTTTAGAGAACCACGGGGGGTTCTCC
3._GC-01-114-6-11
GGTTTTAGAGAACCACGGGGGGTTCTCC
4._GC-01-114-6-11
GGTTTTAGAGAACCACGGGGGGTTCTCC
5._GC-01-114-6-11
GGTTTTAGAGAACCACGGGGGGTTCTCC
6._GC-01-114-6-11
GGTTTTAGAGAACCACGGGGGGTTCTCC
7._GC-01-114-6-11
GGTTTTAGAGAACCACGGGGGGTTCTCC
8._POUND_7_/B
____TT__________________CTCC
9._POUND_7_/B
____TT__________________CTCC
10._POUND_7_/B
____TT__________________CTCC
11._POUND_7_/B
____TT__________________CTCC
12._POUND_7_/B
____TT__________________CTCC
13._POUND_7_/B
____TT__________________CTCC
14._POUND_7_/B
____TT__________________CTCC
15._POUND_7_/B
____TT__________________CTCC
16._POUND_7_/B
____TT__________________CTCC
17._RUQ_24
____TT__________________CTCC
18._RUQ_24
GGTT____AG____________TTCT__
19._RUQ_24
________AG__________________
20._RUQ_24B
________AG__________________
21._RUQ_24
CC__AA__AGAAGG__GGGGCCAAAGGG
 57 58 59 60 61 62 63 64 65 66 67 68 69 70
_Input profile
TTGGCCCCTTAAGGGGACAAGTGGGGTT
1._GC-01-114-6-11
TTGGCCCCTTAAGGGGACAAGTGGGGTT
2._GC-01-114-6-11
TTGGCCCCTTAAGGGGACAAGTGGGGTT
3._GC-01-114-6-11
TTGGCCCCTTAAGGGGACAAGTGGGGTT
4._GC-01-114-6-11
TTGGCCCCTTAAGGGGACAAGTGGGGTT
5._GC-01-114-6-11
TTGGCCCCTTAAGGGGACAAGTGGGGTT
6._GC-01-114-6-11
TTGGCCCCTTAAGGGGACAAGTGGGGTT
7._GC-01-114-6-11
TTGGCCCCTTAAGGGGACAAGTGGGGTT
8._POUND_7_/B
____CC__TTAAGG__ACAAGTGG____
9._POUND_7_/B
____CC__TTAAGG__ACAAGTGG____
10._POUND_7_/B
____CC__TTAAGG__ACAAGTGG____
11._POUND_7_/B
____CC__TTAAGG__ACAAGTGG____
12._POUND_7_/B
____CC__TTAAGG__ACAAGTGG____
13._POUND_7_/B
____CC__TTAAGG__ACAAGTGG____
14._POUND_7_/B
____CC__TTAAGG__ACAAGTGG____
15._POUND_7_/B
____CC__TTAAGG__ACAAGTGG____
16._POUND_7_/B
____CC__TTAAGG__ACAAGTGG____
17._RUQ_24
____CC__TTAAGG__ACAAGTGG____
18._RUQ_24
TT__CCCCTTAA__GGACAAGTGGGG__
19._RUQ_24
__GG____________ACAA__GGGG__
20._RUQ_24B
__GG____________ACAA__GGGG__
21._RUQ_24
AAGGGGGGAAAAGGGGACAAACCCGG__
 71 72 73 74 75 76 77 78 79 80 81 82 83 84
_Input profile
CGAACTACAACCCCAACCCCCCAAACCT
1._GC-01-114-6-11
CGAACTACAACCCCAACCCCCCAAACCT
2._GC-01-114-6-11
CGAACTACAACCCCAACCCCCCAAACCT
3._GC-01-114-6-11
CGAACTACAACCCCAACCCCCCAAACCT
4._GC-01-114-6-11
CGAACTACAACCCCAACCCCCCAAACCT
5._GC-01-114-6-11
CGAACTACAACCCCAACCCCCCAAACCT
6._GC-01-114-6-11
CGAACTAC__CCCCAACCCCCCAAACCT
7._GC-01-114-6-11
CGAACTACAACCCCAACCCCCCAAACCT
8._POUND_7_/B
__AACT__________CCCC______CT
9._POUND_7_/B
__AACT__________CCCC______CT
10._POUND_7_/B
__AACT__________CCCC______CT
11._POUND_7_/B
__AACT__________CCCC______CT
12._POUND_7_/B
__AACT__________CCCC______CT
13._POUND_7_/B
__AACT__________CCCC______CT
14._POUND_7_/B
__AACT__________CCCC______CT
15._POUND_7_/B
__AACT__________CCCC______CT
16._POUND_7_/B
__AACT__________CCCC______CT
17._RUQ_24
__AACT__________CCCC______CT
18._RUQ_24
________________CCCC____ACCT
19._RUQ_24
__AA______________CC____AC__
20._RUQ_24B
__AA______________CC____AC__
21._RUQ_24
____AGACAACCCC__CCGGGGAAACAG
 85 86 87 88 89 90 91 92 93 94     
_Input profile
CTCCTTAACTCTTTTTATGGX_XX_XX_XX_X
1._GC-01-114-6-11
CTCCTTAACTCTTTTTATGGX_XX_XX_XX_X
2._GC-01-114-6-11
CTCCTTAACTCTTTTTATGGX_XX_XX_XX_X
3._GC-01-114-6-11
CTCCTTAACTCTTTTTATGGX_XX_XX_XX_X
4._GC-01-114-6-11
CTCCTTAACTCTTTTTATGGX_XX_XX_XX_X
5._GC-01-114-6-11
CTCCTTAACTCTTTTTATGGX_XX_XX_XX_X
6._GC-01-114-6-11
CTCCTTAACTCTTTTTATGGX_XX_XX_XX_X
7._GC-01-114-6-11
CTCCTTAACTCTTTTTATGGX_XX_XX_XX_X
8._POUND_7_/B
CTCC__AA__CTTTTT____X_XX_XX_XX_X
9._POUND_7_/B
CTCC__AA__CTTTTT____X_XX_XX_XX_X
10._POUND_7_/B
CTCC__AA__CTTTTT____X_XX_XX_XX_X
11._POUND_7_/B
CTCC__AA__CTTTTT____X_XX_XX_XX_X
12._POUND_7_/B
CTCC__AA__CTTTTT____X_XX_XX_XX_X
13._POUND_7_/B
CTCC__AA__CTTTTT____X_XX_XX_XX_X
14._POUND_7_/B
CTCC__AA__CTTTTT____X_XX_XX_XX_X
15._POUND_7_/B
CTCC__AA__CTTTTT____X_XX_XX_XX_X
16._POUND_7_/B
CTCC__AA__CTTTTT____X_XX_XX_XX_X
17._RUQ_24
CTCC__AA__CTTTTT____X_XX_XX_XX_X
18._RUQ_24
______AACCCTTT______X_XX_XX_XX_X
19._RUQ_24
__CC____CT__TT______X_XX_XX_XX_X
20._RUQ_24B
__CC____CT__TT______X_XX_XX_XX_X
21._RUQ_24
AG__AA____AGAAAAATGGX_XX_XX_XX_X

Input profile: POUND_7_/B GC-01-114-6-11

 
Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: 4 > FP3
 Mars, 2018

1._POUND_7_/B GC-01-114-6-11

identical
94 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2
 Mars, 2018

2._POUND_7_/B GC-01-114-6-11

identical
94 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3
 Mars, 2018

3._POUND_7_/B GC-01-114-6-11

identical
94 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 9
Notes: 9
 Mars, 2018

4._POUND_7_/B GC-01-114-6-11

identical
94 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 10
Notes: 10 > FP2
 Mars, 2018

5._POUND_7_/B GC-01-114-6-11

identical
94 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 13
Notes: 13
 Mars, 2018

6._POUND_7_/B GC-01-114-6-11

identical
93 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1 > FP1
 Mars, 2018

7._POUND_7_/B GC-01-114-6-11

identical
93 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 11
Notes: 11 > FP4
 Mars, 2018

8._POUND_7_/B

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1611 3
 Dapeng Zhang, 2016

9._POUND_7_/B

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1611 4 > FP
 Dapeng Zhang, 2016

10._POUND_7_/B

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1611 11 > F
 Dapeng Zhang, 2016

11._POUND_7_/B

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1611 10 > F
 Dapeng Zhang, 2016

12._POUND_7_/B

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1611 1 > FP
 Dapeng Zhang, 2016

13._POUND_7_/B

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1611 13
 Dapeng Zhang, 2016

14._POUND_7_/B

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1611 9
 Dapeng Zhang, 2016

15._POUND_7_/B

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1611 2
 Dapeng Zhang, 2016

16._POUND_7_/B

identical
40 shared markers

International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: 6B F407 T3
 Dapeng Zhang, 2016

17._POUND_7_/B RUQ_24

98.8 %
40 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2016

18._POUND_7_/B RUQ_24

96.3 %
41 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

19._POUND_7_/B RUQ_24

90 %
20 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Lambert Motilal, 2023
Population Assignment: 

20._POUND_7_/B RUQ_24B

90 %
20 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Lambert Motilal, 2023

21._POUND_7_/B RUQ_24

50 %
80 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
Notes: Reading_Collection
 Mars, 2018

 


  Key to SNP Markers

1TcSNP1075 2TcSNP1350 3TcSNP534 4TcSNP591 5TcSNP42
6TcSNP418 7TcSNP702 8TcSNP1096 9TcSNP1060 10TcSNP1165
11TcSNP429 12TcSNP75 13TcSNP891 14TcSNP122 15TcSNP316
16TcSNP521 17TcSNP1062 18TcSNP836 19TcSNP878 20TcSNP929
21TcSNP413 22TcSNP653 23TcSNP1149 24TcSNP174 25TcSNP32
26TcSNP372 27TcSNP448 28TcSNP872 29TcSNP953 30TcSNP1034
31TcSNP1175 32TcSNP1111 33TcSNP577 34TcSNP90 35TcSNP998
36TcSNP150 37TcSNP28 38TcSNP751 39TcSNP1484 40TcSNP602
41TcSNP561 42TcSNP894 43TcSNP1063 44TcSNP1126 45TcSNP1270
46TcSNP606 47TcSNP329 48TcSNP689 49TcSNP944 50TcSNP1242
51TcSNP1383 52TcSNP547 53TcSNP776 54TcSNP1309 55TcSNP151
56TcSNP1520 57TcSNP799 58TcSNP899 59TcSNP226 60TcSNP1439
61TcSNP1442 62TcSNP193 63TcSNP25 64TcSNP364 65TcSNP144
66TcSNP230 67TcSNP560 68TcSNP723 69TcSNP731 70TcSNP701
71TcSNP1041 72TcSNP645 73TcSNP917 74Tcm003s01336581 75Tcm003s07402719
76Tcm001s00947643 77Tcm006s26664133 78Tcm002s20575712 79TcSNP529 80TcSNP1458
81TcSNP60 82TcSNP430 83TcSNP823 84TcSNP619 85TcSNP994
86TcSNP1144 87TcSNP1156 88TcSNP469 89TcSNP999 90TcSNP242
91TcSNP1253 92TcSNP1414 93TcSNP154 94TcSNP240