SNP Profiles of POUND-7B   View Data

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 1234567891011121314
_Input profile
AAAACTAAGGGGCCCCCTCCGGTTCTTT
1._GC-01-114-6-11
AAAACTAAGGGGCCCCCTCCGGTTCTTT
2._GC-01-114-6-11
AAAACTAAGGGGCCCCCTCCGGTTCTTT
3._GC-01-114-6-11
AAAACTAAGGGGCCCCCTCCGGTTCTTT
4._GC-01-114-6-11
AAAACTAAGGGGCCCCCTCCGGTTCTTT
5._GC-01-114-6-11
AAAACTAAGGGGCCCCCTCCGGTTCTTT
6._GC-01-114-6-11
AAAACTAAGGGGCCCCCTCCGGTTCTTT
7._GC-01-114-6-11
AAAACTAAGGGGCCCCCTCCGGTTCTTT
8._POUND_7_/B
AAAACTAA________CTCCGG__CT__
9._POUND_7_/B
AAAACTAA________CTCCGG__CT__
10._POUND_7_/B
AAAACTAA________CTCCGG__CT__
11._POUND_7_/B
AAAACTAA________CTCCGG__CT__
12._POUND_7_/B
AAAACTAA________CTCCGG__CT__
13._POUND_7_/B
AAAACTAA________CTCCGG__CT__
14._POUND_7_/B
AAAACTAA________CTCCGG__CT__
15._POUND_7_/B
AAAACTAA________CTCCGG__CT__
16._POUND_7_/B
AAAACTAA________CTCCGG__CT__
17._RUQ_24
AAAACTAA________CTCCGG__CT__
18._RUQ_24
____CTAA____TT__CT____TT____
19._RUQ_24
______AA____TT______________
20._RUQ_24B
______AA____TT______________
21._RUQ_24
AAAA__AAGGGG__GGAG__GGAAAGAA
 1516171819202122232425262728
_Input profile
AAAAGGGGCCGGCTAATTGGTTAACCCC
1._GC-01-114-6-11
AAAAGGGGCCGGCTAATTGGTTAACCCC
2._GC-01-114-6-11
AAAAGGGGCCGGCTAATTGGTTAACCCC
3._GC-01-114-6-11
AAAAGGGGCCGGCTAATTGGTTAACCCC
4._GC-01-114-6-11
AAAAGGGGCCGGCTAATTGGTTAACCCC
5._GC-01-114-6-11
AAAAGGGGCCGGCTAATTGGTTAACCCC
6._GC-01-114-6-11
AAAAGGGGCCGGCTAATTGGTTAACCCC
7._GC-01-114-6-11
AAAAGGGGCCGGCTAA__GGTTAACCCC
8._POUND_7_/B
____GG____GG________TTAA__CC
9._POUND_7_/B
____GG____GG________TTAA__CC
10._POUND_7_/B
____GG____GG________TTAA__CC
11._POUND_7_/B
____GG____GG________TTAA__CC
12._POUND_7_/B
____GG____GG________TTAA__CC
13._POUND_7_/B
____GG____GG________TTAA__CC
14._POUND_7_/B
____GG____GG________TTAA__CC
15._POUND_7_/B
____GG____GG________TTAA__CC
16._POUND_7_/B
____GG____GG________TTAA__CC
17._RUQ_24
____GG____GG________TTAA__CC
18._RUQ_24
________CC________GG__AACCCC
19._RUQ_24
____GGTT__________________CC
20._RUQ_24B
____GGTT__________________CC
21._RUQ_24
TTAAGGCC__GGAGAAAAGGTTAAGGGG
 2930313233343536373839404142
_Input profile
AATTGGGGGGCCAGGGGGTTAACCGGCC
1._GC-01-114-6-11
AATTGGGGGGCCAGGGGGTTAACCGGCC
2._GC-01-114-6-11
AATTGGGGGGCCAGGGGGTTAACCGGCC
3._GC-01-114-6-11
AATTGGGGGGCCAGGGGGTTAACCGGCC
4._GC-01-114-6-11
AATTGGGGGGCCAGGGGGTTAACCGGCC
5._GC-01-114-6-11
AATTGGGGGGCCAGGGGGTTAACCGGCC
6._GC-01-114-6-11
AATTGGGGGGCCAGGGGGTTAACCGGCC
7._GC-01-114-6-11
AATTGGGGGGCCAGGGGGTTAACCGGCC
8._POUND_7_/B
AA______GG__AGGG____AA______
9._POUND_7_/B
AA______GG__AGGG____AA______
10._POUND_7_/B
AA______GG__AGGG____AA______
11._POUND_7_/B
AA______GG__AGGG____AA______
12._POUND_7_/B
AA______GG__AGGG____AA______
13._POUND_7_/B
AA______GG__AGGG____AA______
14._POUND_7_/B
AA______GG__AGGG____AA______
15._POUND_7_/B
AA______GG__AGGG____AA______
16._POUND_7_/B
AA______GG__AGGG____AA______
17._RUQ_24
AA______GG__AGGG____AG______
18._RUQ_24
______GGGGCCAGGG____AACC____
19._RUQ_24
________GG__AG________CC____
20._RUQ_24B
________GG__AG________CC____
21._RUQ_24
AAAACCGGGGCCAGCCCCAAAAGGGGGG
 4344454647484950515253545556
_Input profile
GGTTTTAGAGAACCACGGGGGGTTCTCC
1._GC-01-114-6-11
GGTTTTAGAGAACCACGGGGGGTTCTCC
2._GC-01-114-6-11
GGTTTTAGAGAACCACGGGGGGTTCTCC
3._GC-01-114-6-11
GGTTTTAGAGAACCACGGGGGGTTCTCC
4._GC-01-114-6-11
GGTTTTAGAGAACCACGGGGGGTTCTCC
5._GC-01-114-6-11
GGTTTTAGAGAACCACGGGGGGTTCTCC
6._GC-01-114-6-11
GGTTTTAGAGAACCACGGGGGGTTCTCC
7._GC-01-114-6-11
GGTTTTAGAGAACCACGGGGGGTTCTCC
8._POUND_7_/B
____TT__________________CTCC
9._POUND_7_/B
____TT__________________CTCC
10._POUND_7_/B
____TT__________________CTCC
11._POUND_7_/B
____TT__________________CTCC
12._POUND_7_/B
____TT__________________CTCC
13._POUND_7_/B
____TT__________________CTCC
14._POUND_7_/B
____TT__________________CTCC
15._POUND_7_/B
____TT__________________CTCC
16._POUND_7_/B
____TT__________________CTCC
17._RUQ_24
____TT__________________CTCC
18._RUQ_24
GGTT____AG____________TTCT__
19._RUQ_24
________AG__________________
20._RUQ_24B
________AG__________________
21._RUQ_24
CC__AA__AGAAGG__GGGGCCAAAGGG
 5758596061626364656667686970
_Input profile
TTGGCCCCTTAAGGGGACAAGTGGGGTT
1._GC-01-114-6-11
TTGGCCCCTTAAGGGGACAAGTGGGGTT
2._GC-01-114-6-11
TTGGCCCCTTAAGGGGACAAGTGGGGTT
3._GC-01-114-6-11
TTGGCCCCTTAAGGGGACAAGTGGGGTT
4._GC-01-114-6-11
TTGGCCCCTTAAGGGGACAAGTGGGGTT
5._GC-01-114-6-11
TTGGCCCCTTAAGGGGACAAGTGGGGTT
6._GC-01-114-6-11
TTGGCCCCTTAAGGGGACAAGTGGGGTT
7._GC-01-114-6-11
TTGGCCCCTTAAGGGGACAAGTGGGGTT
8._POUND_7_/B
____CC__TTAAGG__ACAAGTGG____
9._POUND_7_/B
____CC__TTAAGG__ACAAGTGG____
10._POUND_7_/B
____CC__TTAAGG__ACAAGTGG____
11._POUND_7_/B
____CC__TTAAGG__ACAAGTGG____
12._POUND_7_/B
____CC__TTAAGG__ACAAGTGG____
13._POUND_7_/B
____CC__TTAAGG__ACAAGTGG____
14._POUND_7_/B
____CC__TTAAGG__ACAAGTGG____
15._POUND_7_/B
____CC__TTAAGG__ACAAGTGG____
16._POUND_7_/B
____CC__TTAAGG__ACAAGTGG____
17._RUQ_24
____CC__TTAAGG__ACAAGTGG____
18._RUQ_24
TT__CCCCTTAA__GGACAAGTGGGG__
19._RUQ_24
__GG____________ACAA__GGGG__
20._RUQ_24B
__GG____________ACAA__GGGG__
21._RUQ_24
AAGGGGGGAAAAGGGGACAAACCCGG__
 7172737475767778798081828384
_Input profile
CGAACTACCCCCAACCCCCCAAACCTCT
1._GC-01-114-6-11
CGAACTACCCCCAACCCCCCAAACCTCT
2._GC-01-114-6-11
CGAACTACCCCCAACCCCCCAAACCTCT
3._GC-01-114-6-11
CGAACTACCCCCAACCCCCCAAACCTCT
4._GC-01-114-6-11
CGAACTACCCCCAACCCCCCAAACCTCT
5._GC-01-114-6-11
CGAACTACCCCCAACCCCCCAAACCTCT
6._GC-01-114-6-11
CGAACTACCCCCAACCCCCCAAACCTCT
7._GC-01-114-6-11
CGAACTACCCCCAACCCCCCAAACCTCT
8._POUND_7_/B
__AACT________CCCC______CTCT
9._POUND_7_/B
__AACT________CCCC______CTCT
10._POUND_7_/B
__AACT________CCCC______CTCT
11._POUND_7_/B
__AACT________CCCC______CTCT
12._POUND_7_/B
__AACT________CCCC______CTCT
13._POUND_7_/B
__AACT________CCCC______CTCT
14._POUND_7_/B
__AACT________CCCC______CTCT
15._POUND_7_/B
__AACT________CCCC______CTCT
16._POUND_7_/B
__AACT________CCCC______CTCT
17._RUQ_24
__AACT________CCCC______CTCT
18._RUQ_24
______________CCCC____ACCT__
19._RUQ_24
__AA____________CC____AC____
20._RUQ_24B
__AA____________CC____AC____
21._RUQ_24
____AGACCCCC__CCGGGGAAACAGAG
 858687888990919293     
_Input profile
CCTTAACTCTTTTTATGGX_XX_XX_XX_XX_X
1._GC-01-114-6-11
CCTTAACTCTTTTTATGGX_XX_XX_XX_XX_X
2._GC-01-114-6-11
CCTTAACTCTTTTTATGGX_XX_XX_XX_XX_X
3._GC-01-114-6-11
CCTTAACTCTTTTTATGGX_XX_XX_XX_XX_X
4._GC-01-114-6-11
CCTTAACTCTTTTTATGGX_XX_XX_XX_XX_X
5._GC-01-114-6-11
CCTTAACTCTTTTTATGGX_XX_XX_XX_XX_X
6._GC-01-114-6-11
CCTTAACTCTTTTTATGGX_XX_XX_XX_XX_X
7._GC-01-114-6-11
CCTTAACTCTTTTTATGGX_XX_XX_XX_XX_X
8._POUND_7_/B
CC__AA__CTTTTT____X_XX_XX_XX_XX_X
9._POUND_7_/B
CC__AA__CTTTTT____X_XX_XX_XX_XX_X
10._POUND_7_/B
CC__AA__CTTTTT____X_XX_XX_XX_XX_X
11._POUND_7_/B
CC__AA__CTTTTT____X_XX_XX_XX_XX_X
12._POUND_7_/B
CC__AA__CTTTTT____X_XX_XX_XX_XX_X
13._POUND_7_/B
CC__AA__CTTTTT____X_XX_XX_XX_XX_X
14._POUND_7_/B
CC__AA__CTTTTT____X_XX_XX_XX_XX_X
15._POUND_7_/B
CC__AA__CTTTTT____X_XX_XX_XX_XX_X
16._POUND_7_/B
CC__AA__CTTTTT____X_XX_XX_XX_XX_X
17._RUQ_24
CC__AA__CTTTTT____X_XX_XX_XX_XX_X
18._RUQ_24
____AACCCTTT______X_XX_XX_XX_XX_X
19._RUQ_24
CC____CT__TT______X_XX_XX_XX_XX_X
20._RUQ_24B
CC____CT__TT______X_XX_XX_XX_XX_X
21._RUQ_24
__AA____AGAAAAATGGX_XX_XX_XX_XX_X

Input profile: POUND_7_/B GC-01-114-6-11

 
Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1 > FP1
 Mars, 2018

1._POUND_7_/B GC-01-114-6-11

identical
93 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3
 Mars, 2018

2._POUND_7_/B GC-01-114-6-11

identical
93 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2
 Mars, 2018

3._POUND_7_/B GC-01-114-6-11

identical
93 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: 4 > FP3
 Mars, 2018

4._POUND_7_/B GC-01-114-6-11

identical
93 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 9
Notes: 9
 Mars, 2018

5._POUND_7_/B GC-01-114-6-11

identical
93 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 10
Notes: 10 > FP2
 Mars, 2018

6._POUND_7_/B GC-01-114-6-11

identical
93 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 13
Notes: 13
 Mars, 2018

7._POUND_7_/B GC-01-114-6-11

identical
92 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 11
Notes: 11 > FP4
 Mars, 2018

8._POUND_7_/B

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1611 3
 Dapeng Zhang, 2016

9._POUND_7_/B

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1611 4 > FP
 Dapeng Zhang, 2016

10._POUND_7_/B

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1611 11 > F
 Dapeng Zhang, 2016

11._POUND_7_/B

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1611 10 > F
 Dapeng Zhang, 2016

12._POUND_7_/B

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1611 1 > FP
 Dapeng Zhang, 2016

13._POUND_7_/B

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1611 13
 Dapeng Zhang, 2016

14._POUND_7_/B

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1611 9
 Dapeng Zhang, 2016

15._POUND_7_/B

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1611 2
 Dapeng Zhang, 2016
Population Assignment: 
 Dapeng Zhang, 2016

16._POUND_7_/B

identical
40 shared markers

International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: 6B F407 T3
 Dapeng Zhang, 2016

17._POUND_7_/B RUQ_24

98.8 %
40 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2016

18._POUND_7_/B RUQ_24

96.3 %
41 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

19._POUND_7_/B RUQ_24

90 %
20 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Lambert Motilal, 2023

20._POUND_7_/B RUQ_24B

90 %
20 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Lambert Motilal, 2023

21._POUND_7_/B RUQ_24

49.4 %
79 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
Notes: Reading_Collection
 Mars, 2018

 


  Key to SNP Markers

1TcSNP1075 2TcSNP1350 3TcSNP534 4TcSNP591 5TcSNP42
6TcSNP418 7TcSNP702 8TcSNP1096 9TcSNP1060 10TcSNP1165
11TcSNP429 12TcSNP75 13TcSNP891 14TcSNP122 15TcSNP316
16TcSNP521 17TcSNP1062 18TcSNP836 19TcSNP878 20TcSNP929
21TcSNP413 22TcSNP653 23TcSNP1149 24TcSNP174 25TcSNP32
26TcSNP372 27TcSNP448 28TcSNP872 29TcSNP953 30TcSNP1034
31TcSNP1175 32TcSNP1111 33TcSNP577 34TcSNP90 35TcSNP998
36TcSNP150 37TcSNP28 38TcSNP751 39TcSNP1484 40TcSNP602
41TcSNP561 42TcSNP894 43TcSNP1063 44TcSNP1126 45TcSNP1270
46TcSNP606 47TcSNP329 48TcSNP689 49TcSNP944 50TcSNP1242
51TcSNP1383 52TcSNP547 53TcSNP776 54TcSNP1309 55TcSNP151
56TcSNP1520 57TcSNP799 58TcSNP899 59TcSNP226 60TcSNP1439
61TcSNP1442 62TcSNP193 63TcSNP25 64TcSNP364 65TcSNP144
66TcSNP230 67TcSNP560 68TcSNP723 69TcSNP731 70TcSNP701
71TcSNP1041 72TcSNP645 73TcSNP917 74Tcm003s01336581 75Tcm001s00947643
76Tcm006s26664133 77Tcm002s20575712 78TcSNP529 79TcSNP1458 80TcSNP60
81TcSNP430 82TcSNP823 83TcSNP619 84TcSNP994 85TcSNP1144
86TcSNP1156 87TcSNP469 88TcSNP999 89TcSNP242 90TcSNP1253
91TcSNP1414 92TcSNP154 93TcSNP240