SNP Profiles of NA 168   View Data

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 Key

 1 2 3 4 5 6 7 8 9 10 11 12 13 14
_Input profile
AAAACCAAGGGGCCCCCCCCGGTTCTTT
1._NA_168___
AAAACCAAGGGGCCCCCCCCGGTTCTTT
2._NA_168___
AAAACCAAGGGGCCCCCCCCGGTTCTTT
3._NA_168___
AAAACCAAGGGGCCCCCCCCGGTTCTTT
4._NA_168___
AAAACCAAGGGGCCCCCCCCGGTTCTTT
5._NA_168___
AAAACCAAGGGGCCCCCCCCGGTTCTTT
6._NA_168___
AAAACCAA________CCCCGG__CT__
7._NA_168___
AAAACCAA________CCCCGG__CT__
8._NA_168___
AAAACCAA________CCCCGG__CT__
9._NA_168___
AAAACCAA________CCCCGG__CT__
10._NA_168___
AAAACCAA________CCCCGG__CT__
11._NA_168___
AAAACCAA________CCCCGG__CT__
12._NA_168___
AAAACTAC________CCCTGG__CT__
13._NA_168___
AAAACTACGGGGCTCCCCCTGGTTCTCT
14._NA_168___
AAAACTACGGGGCTCCCCCTGGTTCTCT
15._NA_168___
AAAACTAC________CCCTGG__CT__
16._NA_168___
AAAACTAC________CCCTGG__CT__
17._NA_168___
AAAATTAA________CCCCGG__CC__
 15 16 17 18 19 20 21 22 23 24 25 26 27 28
_Input profile
AAAAGGGGCCGGTTAATTGGTTATCCCC
1._NA_168___
AAAAGGGGCCGGTTAATTGGTTATCCCC
2._NA_168___
AAAAGGGGCCGGTTAATTGGTTATCCCC
3._NA_168___
AAAAGGGGCCGGTTAATTGGTTATCCCC
4._NA_168___
AAAAGGGGCCGGTTAATTGGTTATCCCC
5._NA_168___
AAAAGGGGCCGGTTAATTGGTTAT__CC
6._NA_168___
____GG____GG________TTAT__CC
7._NA_168___
____GG____GG________TTAT__CC
8._NA_168___
____GG____GG________TTAT__CC
9._NA_168___
____GG____GG________TTAT__CC
10._NA_168___
____GG____GG________TTAT__CC
11._NA_168___
____GG____GG________TTAT__CC
12._NA_168___
____GG____GG________ATAA__CG
13._NA_168___
ATACGGGGCGGGCTAATTGGATAACGCG
14._NA_168___
ATACGGGGCGGGCTAATTGGATAACGCG
15._NA_168___
____GG____GG________ATAA__CG
16._NA_168___
____GG____GG________ATAA__CG
17._NA_168___
____GG____GG________ATAA__GG
 29 30 31 32 33 34 35 36 37 38 39 40 41 42
_Input profile
ATTTGGGGGGCCAGGGGGTTAACCGGCC
1._NA_168___
ATTTGGGGGGCCAGGGGGTTAACCGGCC
2._NA_168___
ATTTGGGGGGCCAGGGGGTTAACCGGCC
3._NA_168___
ATTTGGGGGGCCAGGGGGTTAACCGGCC
4._NA_168___
ATTTGGGGGGCCAGGGGGTTAACCGGCC
5._NA_168___
ATTTGGGGGGCCAGGGGGTTAACCGGCC
6._NA_168___
AT______GG__AGGG____AA______
7._NA_168___
AT______GG__AGGG____AA______
8._NA_168___
AT______GG__AGGG____AA______
9._NA_168___
AT______GG__AGGG____AA______
10._NA_168___
AT______GG__AGGG____AA______
11._NA_168___
AT______GG__AGGG____AA______
12._NA_168___
AA______GG__AAGG____AG______
13._NA_168___
AATTGTGGGGCCAAGGGGTTAGCCGGCC
14._NA_168___
AATTGTGGGGCCAAGGGGTTAGCCGGCC
15._NA_168___
AA______GG__AAGG____AG______
16._NA_168___
AA______GG__AAGG____AG______
17._NA_168___
AA______GG__AGGG____AG______
 43 44 45 46 47 48 49 50 51 52 53 54 55 56
_Input profile
GGTTTTAAGGAACCCCGGAAGTTTCTCC
1._NA_168___
GGTTTTAAGGAACCCCGGAAGTTTCTCC
2._NA_168___
GGTTTTAAGGAACCCCGGAAGTTTCTCC
3._NA_168___
GGTTTTAAGGAACCCCGGAAGTTTCTCC
4._NA_168___
GGTTTTAAGGAACCCCGGAAGTTT__CC
5._NA_168___
GGTTTTAAGGAACCCCGGAAGTTTCTCC
6._NA_168___
____TT__________________CTCC
7._NA_168___
____TT__________________CTCC
8._NA_168___
____TT__________________CTCC
9._NA_168___
____TT__________________CTCC
10._NA_168___
____TT__________________CTCC
11._NA_168___
____TT____________________CC
12._NA_168___
____TT____________________CC
13._NA_168___
GGTTTTAGGGAACCCCGGGGGTTT__CC
14._NA_168___
GGTTTTAGGGAACCCCGGGGGTTTCTCC
15._NA_168___
____TT__________________CTCC
16._NA_168___
____TT__________________CTCC
17._NA_168___
____TT__________________CC__
 57 58 59 60 61 62 63 64 65 66 67 68 69 70
_Input profile
TTGGCCCCTTAAGGGGACAGGTGGGGTT
1._NA_168___
TTGGCCCCTTAAGGGGACAGGTGGGGTT
2._NA_168___
TTGGCCCCTTAAGGGGACAGGTGGGGTT
3._NA_168___
TT__CCCCTTAAGGGGACAGGTGGGGTT
4._NA_168___
TTGGCCCCTTAAGGGGACAGGTGGGGTT
5._NA_168___
TTGGCCCCTTAAGGGGACAGGTGGGGTT
6._NA_168___
____CC__TTAAGG__ACAGGTGG____
7._NA_168___
____CC__TTAAGG__ACAGGTGG____
8._NA_168___
____CC__TTAAGG__ACAGGTGG____
9._NA_168___
____CC__TTAAGG__ACAGGTGG____
10._NA_168___
____CC__TTAAGG__ACAGGTGG____
11._NA_168___
____CC__TTAAGG__ACAGGTGG____
12._NA_168___
________TTAAGG__ACAAGTGG____
13._NA_168___
TTGG__CCTTAAGGGGACAAGTGGAGCT
14._NA_168___
TTGGGGCCTTAAGGGGACAAGTGGAGCT
15._NA_168___
____GG__TTAAGG__ACAAGTGG____
16._NA_168___
____GG__TTAAGG__ACAAGTGG____
17._NA_168___
________TTACGG__AAAAGTGG____
 71 72 73 74 75 76 77 78 79 80 81 82 83 84
_Input profile
CGAACTACAACCACAACCCGCCAAACCC
1._NA_168___
CGAACTACAACCACAACCCGCCAAACCC
2._NA_168___
CGAACTACAACCACAACCCGCCAAACCC
3._NA_168___
CGAACTACAACCACAACCCGCCAAACCC
4._NA_168___
CGAACTACAACCACAACCCGCCAAACCC
5._NA_168___
CGAACTACAACCACAACCCGCCAAACCC
6._NA_168___
__AACT__________CCCG______CC
7._NA_168___
__AACT__________CCCG______CC
8._NA_168___
__AACT__________CCCG______CC
9._NA_168___
__AACT__________CCCG______CC
10._NA_168___
__AACT__________CCCG______CC
11._NA_168___
__AACT__________CCCG______CC
12._NA_168___
__AACT__________CCCC______CC
13._NA_168___
CCAACTCCAGACACAGCCCCCCATCCCC
14._NA_168___
CCAACTCCAGACACAGCCCCCCATCCCC
15._NA_168___
__AACT__________CCCC______CC
16._NA_168___
__AACT__________CCCC______CC
17._NA_168___
__AACC__________CCCC______CC
 85 86 87 88 89 90 91 92 93 94     
_Input profile
TTCCTTAGCCCTTTTTATGGX_XX_XX_XX_X
1._NA_168___
TTCCTTAGCCCTTTTTATGGX_XX_XX_XX_X
2._NA_168___
TTCCTTAGCCCTTTTTATGGX_XX_XX_XX_X
3._NA_168___
TTCCTTAGCCCTTTTTATGGX_XX_XX_XX_X
4._NA_168___
TTCCTTAGCCCTTTTTATGGX_XX_XX_XX_X
5._NA_168___
TTCCTTAGCCCTTTTTATGGX_XX_XX_XX_X
6._NA_168___
TTCC__AG__CTTTTT____X_XX_XX_XX_X
7._NA_168___
TTCC__AG__CTTTTT____X_XX_XX_XX_X
8._NA_168___
TTCC__AG__CTTTTT____X_XX_XX_XX_X
9._NA_168___
TTCC__AG__CTTTTT____X_XX_XX_XX_X
10._NA_168___
TTCC__AG__CTTTTT____X_XX_XX_XX_X
11._NA_168___
TTCC__AG__CTTTTT____X_XX_XX_XX_X
12._NA_168___
CTCC__AG__CCGTCT____X_XX_XX_XX_X
13._NA_168___
CTCCTTAGCTCCGTCTTTGGX_XX_XX_XX_X
14._NA_168___
CTCCTTAGCTCCGTCTTTGGX_XX_XX_XX_X
15._NA_168___
CTCC__AG__CCGTCT____X_XX_XX_XX_X
16._NA_168___
CTCC__AG__CCGTCT____X_XX_XX_XX_X
17._NA_168___
TT____AG__CC________X_XX_XX_XX_X

Input profile: NA_168 GC-01-112-6-09

 
Mars Center for Cocoa Science, Brazil
Location: Tree: 6
Notes: 6 > FP4
 Mars, 2018

1._NA_168 GC-01-112-6-09

identical
94 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 12
Notes: 12
 Mars, 2018

2._NA_168 GC-01-112-6-09

identical
94 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 10
Notes: 10
 Mars, 2018

3._NA_168 GC-01-112-6-09

identical
93 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: 4 > FP3
 Mars, 2018

4._NA_168 GC-01-112-6-09

identical
93 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3 > FP2
 Mars, 2018

5._NA_168 GC-01-112-6-09

identical
93 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1 > FP1
 Mars, 2018

6._NA_168

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1609 4 > FP
 Dapeng Zhang, 2016

7._NA_168

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1609 10
 Dapeng Zhang, 2016

8._NA_168

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1609 12
 Dapeng Zhang, 2016

9._NA_168

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1609 1 > FP
 Dapeng Zhang, 2016

10._NA_168

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1609 6 > FP
 Dapeng Zhang, 2016

11._NA_168

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1609 3 > FP
 Dapeng Zhang, 2016

12._NA_168

80.3 %
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1609 7
 Dapeng Zhang, 2016

13._NA_168 GC-01-112-6-09

79.9 %
92 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 7
Notes: 7
 Mars, 2018

14._NA_168 GC-01-112-6-09

79.3 %
94 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 7
Notes: 7
 Mars, 2018

15._NA_168

78.8 %
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1609 7
 Dapeng Zhang, 2016

16._NA_168

78.8 %
40 shared markers

International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: MARPER D 435
 Dapeng Zhang, 2016

17._NA_168

77.1 %
35 shared markers

International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: 5B F493 T5
 Dapeng Zhang, 2016

 


  Key to SNP Markers

1TcSNP1075 2TcSNP1350 3TcSNP534 4TcSNP591 5TcSNP42
6TcSNP418 7TcSNP702 8TcSNP1096 9TcSNP1060 10TcSNP1165
11TcSNP429 12TcSNP75 13TcSNP891 14TcSNP122 15TcSNP316
16TcSNP521 17TcSNP1062 18TcSNP836 19TcSNP878 20TcSNP929
21TcSNP413 22TcSNP653 23TcSNP1149 24TcSNP174 25TcSNP32
26TcSNP372 27TcSNP448 28TcSNP872 29TcSNP953 30TcSNP1034
31TcSNP1175 32TcSNP1111 33TcSNP577 34TcSNP90 35TcSNP998
36TcSNP150 37TcSNP28 38TcSNP751 39TcSNP1484 40TcSNP602
41TcSNP561 42TcSNP894 43TcSNP1063 44TcSNP1126 45TcSNP1270
46TcSNP606 47TcSNP329 48TcSNP689 49TcSNP944 50TcSNP1242
51TcSNP1383 52TcSNP547 53TcSNP776 54TcSNP1309 55TcSNP151
56TcSNP1520 57TcSNP799 58TcSNP899 59TcSNP226 60TcSNP1439
61TcSNP1442 62TcSNP193 63TcSNP25 64TcSNP364 65TcSNP144
66TcSNP230 67TcSNP560 68TcSNP723 69TcSNP731 70TcSNP701
71TcSNP1041 72TcSNP645 73TcSNP917 74Tcm003s01336581 75Tcm003s07402719
76Tcm001s00947643 77Tcm006s26664133 78Tcm002s20575712 79TcSNP529 80TcSNP1458
81TcSNP60 82TcSNP430 83TcSNP823 84TcSNP619 85TcSNP994
86TcSNP1144 87TcSNP1156 88TcSNP469 89TcSNP999 90TcSNP242
91TcSNP1253 92TcSNP1414 93TcSNP154 94TcSNP240