SNP Profiles of GU 255 /P   View Data

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 Key

 1 2 3 4 5 6 7 8 9 10 11 12 13 14
_Input profile
AAAACCAAGGGGCCCCCCCCGGTTCTTT
1._NA_168___
AAAACCAAGGGGCCCCCCCCGGTTCTTT
2._NA_168___
AAAACCAAGGGGCCCCCCCCGGTTCTTT
3._NA_168___
AAAACCAAGGGGCCCCCCCCGGTTCTTT
4._NA_168___
AAAACCAAGGGGCCCCCCCCGGTTCTTT
5._NA_168___
AAAACCAAGGGGCCCCCCCCGGTTCTTT
6._NA_168___
AAAACCAA________CCCCGG__CT__
7._NA_168___
AAAACCAA________CCCCGG__CT__
8._NA_168___
AAAACCAA________CCCCGG__CT__
9._NA_168___
AAAACCAA________CCCCGG__CT__
10._NA_168___
AAAACCAA________CCCCGG__CT__
11._NA_168___
AAAACCAA________CCCCGG__CT__
12._NA_168___
AAAACTAC________CCCTGG__CT__
13._NA_168___
AAAACTACGGGGCTCCCCCTGGTTCTCT
14._NA_168___
AAAACTACGGGGCTCCCCCTGGTTCTCT
15._NA_168___
AAAACTAC________CCCTGG__CT__
16._NA_168___
AAAACTAC________CCCTGG__CT__
17._NA_168___
AAAATTAA________CCCCGG__CC__
 15 16 17 18 19 20 21 22 23 24 25 26 27 28
_Input profile
AAAAGGGGCCGGTTAATTGGTTATCCAT
1._NA_168___
AAAAGGGGCCGGTTAATTGGTTATCCAT
2._NA_168___
AAAAGGGGCCGGTTAATTGGTTATCCAT
3._NA_168___
AAAAGGGGCCGGTTAATTGGTTATCCAT
4._NA_168___
AAAAGGGGCCGGTTAATTGGTTATCCAT
5._NA_168___
AAAAGGGGCCGGTTAATTGGTTATCCAT
6._NA_168___
____GG____GG________TTATCCAT
7._NA_168___
____GG____GG________TTATCCAT
8._NA_168___
____GG____GG________TTATCCAT
9._NA_168___
____GG____GG________TTATCCAT
10._NA_168___
____GG____GG________TTATCCAT
11._NA_168___
____GG____GG________TTATCCAT
12._NA_168___
____GG____GG________ATAACGAA
13._NA_168___
ATACGGGGCGGGCTAATTGGATAACGAA
14._NA_168___
ATACGGGGCGGGCTAATTGGATAACGAA
15._NA_168___
____GG____GG________ATAACGAA
16._NA_168___
____GG____GG________ATAACGAA
17._NA_168___
____GG____GG________ATAAGGAA
 29 30 31 32 33 34 35 36 37 38 39 40 41 42
_Input profile
TTGGGGGGCCAGGGGGTTAACCGGCCGG
1._NA_168___
TTGGGGGGCCAGGGGGTTAACCGGCCGG
2._NA_168___
TTGGGGGGCCAGGGGGTTAACCGGCCGG
3._NA_168___
TTGGGGGGCCAGGGGGTTAACCGGCCGG
4._NA_168___
TTGGGGGGCCAGGGGGTTAACCGGCCGG
5._NA_168___
TTGGGGGGCCAGGGGGTTAACCGGCCGG
6._NA_168___
______GG__AGGG____AA________
7._NA_168___
______GG__AGGG____AA________
8._NA_168___
______GG__AGGG____AA________
9._NA_168___
______GG__AGGG____AA________
10._NA_168___
______GG__AGGG____AA________
11._NA_168___
______GG__AGGG____AA________
12._NA_168___
______GG__AAGG____AG________
13._NA_168___
TTGTGGGGCCAAGGGGTTAGCCGGCCGG
14._NA_168___
TTGTGGGGCCAAGGGGTTAGCCGGCCGG
15._NA_168___
______GG__AAGG____AG________
16._NA_168___
______GG__AAGG____AG________
17._NA_168___
______GG__AGGG____AG________
 43 44 45 46 47 48 49 50 51 52 53 54 55 56
_Input profile
TTTTAAGGAACCCCGGAAGTTTCTCCTT
1._NA_168___
TTTTAAGGAACCCCGGAAGTTTCTCCTT
2._NA_168___
TTTTAAGGAACCCCGGAAGTTTCTCCTT
3._NA_168___
TTTTAAGGAACCCCGGAAGTTTCTCCTT
4._NA_168___
TTTTAAGGAACCCCGGAAGTTTCTCCTT
5._NA_168___
TTTTAAGGAACCCCGGAAGTTT__CCTT
6._NA_168___
__TT__________________CTCC__
7._NA_168___
__TT__________________CTCC__
8._NA_168___
__TT__________________CTCC__
9._NA_168___
__TT__________________CTCC__
10._NA_168___
__TT__________________CTCC__
11._NA_168___
__TT____________________CC__
12._NA_168___
__TT____________________CC__
13._NA_168___
TTTTAGGGAACCCCGGGGGTTT__CCTT
14._NA_168___
TTTTAGGGAACCCCGGGGGTTTCTCCTT
15._NA_168___
__TT__________________CTCC__
16._NA_168___
__TT__________________CTCC__
17._NA_168___
__TT__________________CC____
 57 58 59 60 61 62 63 64 65 66 67 68 69 70
_Input profile
GGCCCCTTAAGGGGACAGGTGGGGTTCG
1._NA_168___
GGCCCCTTAAGGGGACAGGTGGGGTTCG
2._NA_168___
GGCCCCTTAAGGGGACAGGTGGGGTTCG
3._NA_168___
GGCCCCTTAAGGGGACAGGTGGGGTTCG
4._NA_168___
__CCCCTTAAGGGGACAGGTGGGGTTCG
5._NA_168___
GGCCCCTTAAGGGGACAGGTGGGGTTCG
6._NA_168___
__CC__TTAAGG__ACAGGTGG______
7._NA_168___
__CC__TTAAGG__ACAGGTGG______
8._NA_168___
__CC__TTAAGG__ACAGGTGG______
9._NA_168___
__CC__TTAAGG__ACAGGTGG______
10._NA_168___
__CC__TTAAGG__ACAGGTGG______
11._NA_168___
__CC__TTAAGG__ACAGGTGG______
12._NA_168___
______TTAAGG__ACAAGTGG______
13._NA_168___
GG__CCTTAAGGGGACAAGTGGAGCTCC
14._NA_168___
GGGGCCTTAAGGGGACAAGTGGAGCTCC
15._NA_168___
__GG__TTAAGG__ACAAGTGG______
16._NA_168___
__GG__TTAAGG__ACAAGTGG______
17._NA_168___
______TTACGG__AAAAGTGG______
 71 72 73 74 75 76 77 78 79 80 81 82 83 84
_Input profile
AACTACAACCACAACCCGCCAAACCCTT
1._NA_168___
AACTACAACCACAACCCGCCAAACCCTT
2._NA_168___
AACTACAACCACAACCCGCCAAACCCTT
3._NA_168___
AACTACAACCACAACCCGCCAAACCCTT
4._NA_168___
AACTACAACCACAACCCGCCAAACCCTT
5._NA_168___
AACTACAACCACAACCCGCCAAACCCTT
6._NA_168___
AACT__________CCCG______CCTT
7._NA_168___
AACT__________CCCG______CCTT
8._NA_168___
AACT__________CCCG______CCTT
9._NA_168___
AACT__________CCCG______CCTT
10._NA_168___
AACT__________CCCG______CCTT
11._NA_168___
AACT__________CCCG______CCTT
12._NA_168___
AACT__________CCCC______CCCT
13._NA_168___
AACTCCAGACACAGCCCCCCATCCCCCT
14._NA_168___
AACTCCAGACACAGCCCCCCATCCCCCT
15._NA_168___
AACT__________CCCC______CCCT
16._NA_168___
AACT__________CCCC______CCCT
17._NA_168___
AACC__________CCCC______CCTT
 85 86 87 88 89 90 91 92 93      
_Input profile
CCTTAGCCCTTTTTATGGX_XX_XX_XX_XX_X
1._NA_168___
CCTTAGCCCTTTTTATGGX_XX_XX_XX_XX_X
2._NA_168___
CCTTAGCCCTTTTTATGGX_XX_XX_XX_XX_X
3._NA_168___
CCTTAGCCCTTTTTATGGX_XX_XX_XX_XX_X
4._NA_168___
CCTTAGCCCTTTTTATGGX_XX_XX_XX_XX_X
5._NA_168___
CCTTAGCCCTTTTTATGGX_XX_XX_XX_XX_X
6._NA_168___
CC__AG__CTTTTT____X_XX_XX_XX_XX_X
7._NA_168___
CC__AG__CTTTTT____X_XX_XX_XX_XX_X
8._NA_168___
CC__AG__CTTTTT____X_XX_XX_XX_XX_X
9._NA_168___
CC__AG__CTTTTT____X_XX_XX_XX_XX_X
10._NA_168___
CC__AG__CTTTTT____X_XX_XX_XX_XX_X
11._NA_168___
CC__AG__CTTTTT____X_XX_XX_XX_XX_X
12._NA_168___
CC__AG__CCGTCT____X_XX_XX_XX_XX_X
13._NA_168___
CCTTAGCTCCGTCTTTGGX_XX_XX_XX_XX_X
14._NA_168___
CCTTAGCTCCGTCTTTGGX_XX_XX_XX_XX_X
15._NA_168___
CC__AG__CCGTCT____X_XX_XX_XX_XX_X
16._NA_168___
CC__AG__CCGTCT____X_XX_XX_XX_XX_X
17._NA_168___
____AG__CC________X_XX_XX_XX_XX_X

Input profile: NA_168 GC-01-112-6-09

 
Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1 > FP1
 Mars, 2018

1._NA_168 GC-01-112-6-09

identical
93 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 12
Notes: 12
 Mars, 2018

2._NA_168 GC-01-112-6-09

identical
93 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 10
Notes: 10
 Mars, 2018

3._NA_168 GC-01-112-6-09

identical
93 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 6
Notes: 6 > FP4
 Mars, 2018

4._NA_168 GC-01-112-6-09

identical
92 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: 4 > FP3
 Mars, 2018

5._NA_168 GC-01-112-6-09

identical
92 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3 > FP2
 Mars, 2018

6._NA_168

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1609 4 > FP
 Dapeng Zhang, 2016

7._NA_168

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1609 10
 Dapeng Zhang, 2016

8._NA_168

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1609 12
 Dapeng Zhang, 2016

9._NA_168

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1609 1 > FP
 Dapeng Zhang, 2016

10._NA_168

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1609 6 > FP
 Dapeng Zhang, 2016

11._NA_168

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1609 3 > FP
 Dapeng Zhang, 2016

12._NA_168

80.3 %
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1609 7
 Dapeng Zhang, 2016

13._NA_168 GC-01-112-6-09

80.2 %
91 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 7
Notes: 7
 Mars, 2018

14._NA_168 GC-01-112-6-09

79.6 %
93 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 7
Notes: 7
 Mars, 2018

15._NA_168

78.8 %
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1609 7
 Dapeng Zhang, 2016

16._NA_168

78.8 %
40 shared markers

International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: MARPER D 435
 Dapeng Zhang, 2016

17._NA_168

77.1 %
35 shared markers

International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: 5B F493 T5
 Dapeng Zhang, 2016

 


  Key to SNP Markers

1TcSNP1075 2TcSNP1350 3TcSNP534 4TcSNP591 5TcSNP42
6TcSNP418 7TcSNP702 8TcSNP1096 9TcSNP1060 10TcSNP1165
11TcSNP429 12TcSNP75 13TcSNP891 14TcSNP122 15TcSNP316
16TcSNP521 17TcSNP1062 18TcSNP836 19TcSNP878 20TcSNP929
21TcSNP413 22TcSNP653 23TcSNP1149 24TcSNP174 25TcSNP32
26TcSNP372 27TcSNP872 28TcSNP953 29TcSNP1034 30TcSNP1175
31TcSNP1111 32TcSNP577 33TcSNP90 34TcSNP998 35TcSNP150
36TcSNP28 37TcSNP751 38TcSNP1484 39TcSNP602 40TcSNP561
41TcSNP894 42TcSNP1063 43TcSNP1126 44TcSNP1270 45TcSNP606
46TcSNP329 47TcSNP689 48TcSNP944 49TcSNP1242 50TcSNP1383
51TcSNP547 52TcSNP776 53TcSNP1309 54TcSNP151 55TcSNP1520
56TcSNP799 57TcSNP899 58TcSNP226 59TcSNP1439 60TcSNP1442
61TcSNP193 62TcSNP25 63TcSNP364 64TcSNP144 65TcSNP230
66TcSNP560 67TcSNP723 68TcSNP731 69TcSNP701 70TcSNP1041
71TcSNP645 72TcSNP917 73Tcm003s01336581 74Tcm003s07402719 75Tcm001s00947643
76Tcm006s26664133 77Tcm002s20575712 78TcSNP529 79TcSNP1458 80TcSNP60
81TcSNP430 82TcSNP823 83TcSNP619 84TcSNP994 85TcSNP1144
86TcSNP1156 87TcSNP469 88TcSNP999 89TcSNP242 90TcSNP1253
91TcSNP1414 92TcSNP154 93TcSNP240