SNP Profiles of NA 45   View Data

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 Key

 1 2 3 4 5 6 7 8 9 10 11 12 13 14
_Input profile
AATTAAGGGGCCCCCCCCGGTTCCTTAA
1._NA_45___
AATTAAGGGGCCCCCCCCGGTTCCTTAA
2._NA_45___
AATTAAGGGGCCCCCCCCGGTTCCTTAA
3._NA_45___
AATTAAGGGGCCCCCCCCGGTTCCTTAA
4._NA_45___
AATTAAGGGGCCCCCCCCGGTTCCTTAA
5._NA_45___
AATTAAGGGGCCCCCCCCGGTTCCTTAA
6._NA_45___
AATTAAGGGGCCCCCCCCGGTTCCTTAA
7._NA_45___
AATTAAGGGGCCCCCCCCGGTTCCTTAA
8._NA_45___
AATTAA________CCCCGG__CC____
9._NA_45___
AATTAA________CCCCGG__CC____
10._NA_45___
AATTAA________CCCCGG__CC____
11._NA_45___
AATTAA________CCCCGG__CC____
12._NA_45___
AATTAA________CCCCGG__CC____
13._NA_45___
AATTAA________CCCCGG__CC____
14._NA_45___
AATTAA________CCCCGG__CC____
15._NA_45___
AATTAA________CCCCGG__CC____
16._NA_45___
AATTAA________CCCCGG__CC____
 15 16 17 18 19 20 21 22 23 24 25 26 27 28
_Input profile
AAGGGGCCGGCTAATTGGTTAACCCGAA
1._NA_45___
AAGGGGCCGGCTAATTGGTTAACCCGAA
2._NA_45___
AAGGGGCCGGCTAATTGGTTAACCCGAA
3._NA_45___
AAGGGGCCGGCTAATTGGTTAACCCGAA
4._NA_45___
AAGGGGCCGGCTAATTGGTTAACCCGAA
5._NA_45___
AAGGGGCCGGCTAATTGGTTAACCCGAA
6._NA_45___
AAGGGGCCGGCTAATTGGTTAACCCGAA
7._NA_45___
AAGGGGCCGGCTAATTGGTTAACCCGAA
8._NA_45___
__GG____GG________TTAA__CGAA
9._NA_45___
__GG____GG________TTAA__CGAA
10._NA_45___
__GG____GG________TTAA__CGAA
11._NA_45___
__GG____GG________TTAA__CGAA
12._NA_45___
__GG____GG________TTAA__CGAA
13._NA_45___
__GG____GG________TTAA__CGAA
14._NA_45___
__GG____GG________TTAA__CGAA
15._NA_45___
__GG____GG________TTAA__CGAA
16._NA_45___
__GG____GG________TTAA__CGAA
 29 30 31 32 33 34 35 36 37 38 39 40 41 42
_Input profile
TTGGGGGGCCAGGGGGTTAACCGGCCGG
1._NA_45___
TTGGGGGGCCAGGGGGTTAACCGGCCGG
2._NA_45___
TTGGGGGGCCAGGGGGTTAACCGGCCGG
3._NA_45___
TTGGGGGGCCAGGGGGTTAACCGGCCGG
4._NA_45___
TTGGGGGGCCAGGGGGTTAACCGGCCGG
5._NA_45___
TTGGGGGGCCAGGGGGTTAACCGGCCGG
6._NA_45___
TTGGGGGGCCAGGGGGTTAACCGGCCGG
7._NA_45___
TTGGGGGGCCAGGGGGTTAACCGGCCGG
8._NA_45___
______GG__AGGG____AA________
9._NA_45___
______GG__AGGG____AA________
10._NA_45___
______GG__AGGG____AA________
11._NA_45___
______GG__AGGG____AA________
12._NA_45___
______GG__AGGG____AA________
13._NA_45___
______GG__AGGG____AA________
14._NA_45___
______GG__AGGG____AA________
15._NA_45___
______GG__AGGG____AA________
16._NA_45___
______GG__AGGG____AA________
 43 44 45 46 47 48 49 50 51 52 53 54 55 56
_Input profile
TTCTAAGGAACCCCGGGGGGTTCCTTGG
1._NA_45___
TTCTAAGGAACCCCGGGGGGTTCCTTGG
2._NA_45___
TTCTAAGGAACCCCGGGGGGTTCCTTGG
3._NA_45___
TTCTAAGGAACCCCGGGGGGTTCCTTGG
4._NA_45___
TTCTAAGGAACCCCGGGGGGTTCCTTGG
5._NA_45___
TTCTAAGGAACCCCGGGGGGTTCCTTGG
6._NA_45___
TTCTAAGGAACCCCGGGGGGTTCCTTGG
7._NA_45___
TTCTAAGGAACCCCGGGGGGTTCCTTGG
8._NA_45___
__CT__________________CC____
9._NA_45___
__CT__________________CC____
10._NA_45___
__CT__________________CC____
11._NA_45___
__CT__________________CC____
12._NA_45___
__CT__________________CC____
13._NA_45___
__CT__________________CC____
14._NA_45___
__CT__________________CC____
15._NA_45___
__CT__________________CC____
16._NA_45___
__CT__________________CC____
 57 58 59 60 61 62 63 64 65 66 67 68 69 70
_Input profile
CGCCTTAAGGGGACAGGTGGGGTTCCAA
1._NA_45___
CGCCTTAAGGGGACAGGTGGGGTTCCAA
2._NA_45___
CGCCTTAAGGGGACAGGTGGGGTTCCAA
3._NA_45___
CGCCTTAAGGGGACAGGTGGGGTTCCAA
4._NA_45___
CGCCTTAAGGGGACAGGTGGGGTTCCAA
5._NA_45___
CGCCTTAAGGGGACAGGTGGGGTTCCAA
6._NA_45___
CGCCTTAAGGGGACAGGTGGGGTTCCAA
7._NA_45___
CGCCTTAAGGGGACAGGTGGGGTTCCAA
8._NA_45___
CG__TTAAGG__ACAGGTGG______AA
9._NA_45___
CG__TTAAGG__ACAGGTGG______AA
10._NA_45___
CG__TTAAGG__ACAGGTGG______AA
11._NA_45___
CG__TTAAGG__ACAGGTGG______AA
12._NA_45___
CG__TTAAGG__ACAGGTGG______AA
13._NA_45___
CG__TTAAGG__ACAGGTGG______AA
14._NA_45___
CG__TTAAGG__ACAGGTGG______AA
15._NA_45___
CG__TTAAGG__ACAGGTGG______AA
16._NA_45___
CG__TTAAGG__ACAGGTGG______AA
 71 72 73 74 75 76 77 78 79 80 81 82 83 84
_Input profile
CTAAAACCACAACCCGCCAACCCCTTCC
1._NA_45___
CTAAAACCACAACCCGCCAACCCCTTCC
2._NA_45___
CTAAAACCACAACCCGCCAACCCCTTCC
3._NA_45___
CTAAAACCACAACCCGCCAACCCCTTCC
4._NA_45___
CTAAAACCACAACCCGCCAACCCCTTCC
5._NA_45___
CTAAAACCACAACCCGCCAACCCCTTCC
6._NA_45___
CTAAAACCACAACCCGCCAACCCCTTCC
7._NA_45___
CTAA__CCACAACCCGCCAACCCCTTCC
8._NA_45___
CT__________CCCG______CCTTCC
9._NA_45___
CT__________CCCG______CCTTCC
10._NA_45___
CT__________CCCG______CCTTCC
11._NA_45___
CT__________CCCG______CCTTCC
12._NA_45___
CT__________CCCG______CCTTCC
13._NA_45___
CT__________CCCG______CCTTCC
14._NA_45___
CT__________CCCG______CCTTCC
15._NA_45___
CT__________CCCG______CCTTCC
16._NA_45___
CT__________CCCG______CCTTCC
 85 86 87 88 89 90 91 92       
_Input profile
TTAACCCTTTTTTTGGX_XX_XX_XX_XX_XX_X
1._NA_45___
TTAACCCTTTTTTTGGX_XX_XX_XX_XX_XX_X
2._NA_45___
TTAACCCTTTTTTTGGX_XX_XX_XX_XX_XX_X
3._NA_45___
TTAACCCTTTTTTTGGX_XX_XX_XX_XX_XX_X
4._NA_45___
TTAACCCTTTTTTTGGX_XX_XX_XX_XX_XX_X
5._NA_45___
TTAACCCTTTTTTTGGX_XX_XX_XX_XX_XX_X
6._NA_45___
TTAACCCTTTTTTTGGX_XX_XX_XX_XX_XX_X
7._NA_45___
TTAACCCTTTTTTTGGX_XX_XX_XX_XX_XX_X
8._NA_45___
__AA__CTTTTT____X_XX_XX_XX_XX_XX_X
9._NA_45___
__AA__CTTTTT____X_XX_XX_XX_XX_XX_X
10._NA_45___
__AA__CTTTTT____X_XX_XX_XX_XX_XX_X
11._NA_45___
__AA__CTTTTT____X_XX_XX_XX_XX_XX_X
12._NA_45___
__AA__CTTTTT____X_XX_XX_XX_XX_XX_X
13._NA_45___
__AA__CTTTTT____X_XX_XX_XX_XX_XX_X
14._NA_45___
__AA__CTTTTT____X_XX_XX_XX_XX_XX_X
15._NA_45___
__AA__CTTTTT____X_XX_XX_XX_XX_XX_X
16._NA_45___
__AA__CTTTTT____X_XX_XX_XX_XX_XX_X

Input profile: NA_45 GC-01-111-6-08

 
Mars Center for Cocoa Science, Brazil
Location: Tree: 14
Notes: 14 > FP3
 Mars, 2018

1._NA_45 GC-01-111-6-08

identical
92 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 11
Notes: 11 > FP2
 Mars, 2018

2._NA_45 GC-01-111-6-08

identical
92 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 10
Notes: 10
 Mars, 2018

3._NA_45 GC-01-111-6-08

identical
92 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: 4
 Mars, 2018

4._NA_45 GC-01-111-6-08

identical
92 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3 > FP4
 Mars, 2018

5._NA_45 GC-01-111-6-08

identical
92 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2
 Mars, 2018

6._NA_45 GC-01-111-6-08

identical
92 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1 > FP1
 Mars, 2018

7._NA_45 GC-01-111-6-08

identical
91 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 9
Notes: 9
 Mars, 2018

8._NA_45

identical
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1608 4
 Dapeng Zhang, 2016

9._NA_45

identical
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1608 2
 Dapeng Zhang, 2016

10._NA_45

identical
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1608 9
 Dapeng Zhang, 2016

11._NA_45

identical
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1608 10
 Dapeng Zhang, 2016

12._NA_45

identical
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1608 1 > FP
 Dapeng Zhang, 2016

13._NA_45

identical
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1608 11 > F
 Dapeng Zhang, 2016

14._NA_45

identical
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1608 14 > F
 Dapeng Zhang, 2016

15._NA_45

identical
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1608 3 > FP
 Dapeng Zhang, 2016

16._NA_45

identical
38 shared markers

International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: Marper D 673
 Dapeng Zhang, 2016

 


  Key to SNP Markers

1TcSNP1075 2TcSNP534 3TcSNP591 4TcSNP42 5TcSNP418
6TcSNP702 7TcSNP1096 8TcSNP1060 9TcSNP1165 10TcSNP429
11TcSNP75 12TcSNP891 13TcSNP122 14TcSNP316 15TcSNP521
16TcSNP1062 17TcSNP836 18TcSNP878 19TcSNP929 20TcSNP413
21TcSNP653 22TcSNP1149 23TcSNP174 24TcSNP32 25TcSNP372
26TcSNP448 27TcSNP872 28TcSNP953 29TcSNP1034 30TcSNP1175
31TcSNP1111 32TcSNP577 33TcSNP90 34TcSNP998 35TcSNP150
36TcSNP28 37TcSNP751 38TcSNP1484 39TcSNP602 40TcSNP561
41TcSNP894 42TcSNP1063 43TcSNP1126 44TcSNP1270 45TcSNP606
46TcSNP329 47TcSNP689 48TcSNP944 49TcSNP1242 50TcSNP1383
51TcSNP547 52TcSNP776 53TcSNP1309 54TcSNP1520 55TcSNP799
56TcSNP899 57TcSNP226 58TcSNP1439 59TcSNP1442 60TcSNP193
61TcSNP25 62TcSNP364 63TcSNP144 64TcSNP230 65TcSNP560
66TcSNP723 67TcSNP731 68TcSNP701 69TcSNP1041 70TcSNP645
71TcSNP917 72Tcm003s01336581 73Tcm003s07402719 74Tcm001s00947643 75Tcm006s26664133
76Tcm002s20575712 77TcSNP529 78TcSNP1458 79TcSNP60 80TcSNP430
81TcSNP823 82TcSNP619 83TcSNP994 84TcSNP1144 85TcSNP1156
86TcSNP469 87TcSNP999 88TcSNP242 89TcSNP1253 90TcSNP1414
91TcSNP154 92TcSNP240