SNP Profiles of NA-45   View Data

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 1234567891011121314
_Input profile
AATTAAGGGGCCCCCCCCGGTTCCTTAA
1._GC-01-111-6-08
AATTAAGGGGCCCCCCCCGGTTCCTTAA
2._NA_45
AATTAA________CCCCGG__CC____
3._NA_45
AATTAA________CCCCGG__CC____
4._GC-01-111-6-08
AATTAAGGGGCCCCCCCCGGTTCCTTAA
5._GC-01-111-6-08
AATTAAGGGGCCCCCCCCGGTTCCTTAA
6._GC-01-111-6-08
AATTAAGGGGCCCCCCCCGGTTCCTTAA
7._GC-01-111-6-08
AATTAAGGGGCCCCCCCCGGTTCCTTAA
8._GC-01-111-6-08
AATTAAGGGGCCCCCCCCGGTTCCTTAA
9._GC-01-111-6-08
AATTAAGGGGCCCCCCCCGGTTCCTTAA
10._NA_45
AATTAA________CCCCGG__CC____
11._NA_45
AATTAA________CCCCGG__CC____
12._NA_45
AATTAA________CCCCGG__CC____
13._NA_45
AATTAA________CCCCGG__CC____
14._NA_45
AATTAA________CCCCGG__CC____
15._NA_45
AATTAA________CCCCGG__CC____
16._NA_45
AATTAA________CCCCGG__CC____
 1516171819202122232425262728
_Input profile
AAGGGGCCGGCTAATTGGTTAACCCGAA
1._GC-01-111-6-08
AAGGGGCCGGCTAATTGGTTAACCCGAA
2._NA_45
__GG____GG________TTAA__CGAA
3._NA_45
__GG____GG________TTAA__CGAA
4._GC-01-111-6-08
AAGGGGCCGGCTAATTGGTTAACCCGAA
5._GC-01-111-6-08
AAGGGGCCGGCTAATTGGTTAACCCGAA
6._GC-01-111-6-08
AAGGGGCCGGCTAATTGGTTAACCCGAA
7._GC-01-111-6-08
AAGGGGCCGGCTAATTGGTTAACCCGAA
8._GC-01-111-6-08
AAGGGGCCGGCTAATTGGTTAACCCGAA
9._GC-01-111-6-08
AAGGGGCCGGCTAATTGGTTAACCCGAA
10._NA_45
__GG____GG________TTAA__CGAA
11._NA_45
__GG____GG________TTAA__CGAA
12._NA_45
__GG____GG________TTAA__CGAA
13._NA_45
__GG____GG________TTAA__CGAA
14._NA_45
__GG____GG________TTAA__CGAA
15._NA_45
__GG____GG________TTAA__CGAA
16._NA_45
__GG____GG________TTAA__CGAA
 2930313233343536373839404142
_Input profile
TTGGGGGGCCAGGGGGTTAACCGGCCGG
1._GC-01-111-6-08
TTGGGGGGCCAGGGGGTTAACCGGCCGG
2._NA_45
______GG__AGGG____AA________
3._NA_45
______GG__AGGG____AA________
4._GC-01-111-6-08
TTGGGGGGCCAGGGGGTTAACCGGCCGG
5._GC-01-111-6-08
TTGGGGGGCCAGGGGGTTAACCGGCCGG
6._GC-01-111-6-08
TTGGGGGGCCAGGGGGTTAACCGGCCGG
7._GC-01-111-6-08
TTGGGGGGCCAGGGGGTTAACCGGCCGG
8._GC-01-111-6-08
TTGGGGGGCCAGGGGGTTAACCGGCCGG
9._GC-01-111-6-08
TTGGGGGGCCAGGGGGTTAACCGGCCGG
10._NA_45
______GG__AGGG____AA________
11._NA_45
______GG__AGGG____AA________
12._NA_45
______GG__AGGG____AA________
13._NA_45
______GG__AGGG____AA________
14._NA_45
______GG__AGGG____AA________
15._NA_45
______GG__AGGG____AA________
16._NA_45
______GG__AGGG____AA________
 4344454647484950515253545556
_Input profile
TTCTAAGGAACCCCGGGGGGTTCTCCTT
1._GC-01-111-6-08
TTCTAAGGAACCCCGGGGGGTT__CCTT
2._NA_45
__CT__________________CTCC__
3._NA_45
__CT____________________CC__
4._GC-01-111-6-08
TTCTAAGGAACCCCGGGGGGTTCCCCTT
5._GC-01-111-6-08
TTCTAAGGAACCCCGGGGGGTTCCCCTT
6._GC-01-111-6-08
TTCTAAGGAACCCCGGGGGGTTCCCCTT
7._GC-01-111-6-08
TTCTAAGGAACCCCGGGGGGTTCCCCTT
8._GC-01-111-6-08
TTCTAAGGAACCCCGGGGGGTTCCCCTT
9._GC-01-111-6-08
TTCTAAGGAACCCCGGGGGGTTCCCCTT
10._NA_45
__CT__________________CCCC__
11._NA_45
__CT__________________CCCC__
12._NA_45
__CT__________________CCCC__
13._NA_45
__CT__________________CCCC__
14._NA_45
__CT__________________CCCC__
15._NA_45
__CT__________________CCCC__
16._NA_45
__CT__________________CCCC__
 5758596061626364656667686970
_Input profile
GGCGCCTTAAGGGGACAGGTGGGGTTCC
1._GC-01-111-6-08
GGCGCCTTAAGGGGACAGGTGGGGTTCC
2._NA_45
__CG__TTAAGG__ACAGGTGG______
3._NA_45
__CG__TTAAGG__ACAGGTGG______
4._GC-01-111-6-08
GGCGCCTTAAGGGGACAGGTGGGGTTCC
5._GC-01-111-6-08
GGCGCCTTAAGGGGACAGGTGGGGTTCC
6._GC-01-111-6-08
GGCGCCTTAAGGGGACAGGTGGGGTTCC
7._GC-01-111-6-08
GGCGCCTTAAGGGGACAGGTGGGGTTCC
8._GC-01-111-6-08
GGCGCCTTAAGGGGACAGGTGGGGTTCC
9._GC-01-111-6-08
GGCGCCTTAAGGGGACAGGTGGGGTTCC
10._NA_45
__CG__TTAAGG__ACAGGTGG______
11._NA_45
__CG__TTAAGG__ACAGGTGG______
12._NA_45
__CG__TTAAGG__ACAGGTGG______
13._NA_45
__CG__TTAAGG__ACAGGTGG______
14._NA_45
__CG__TTAAGG__ACAGGTGG______
15._NA_45
__CG__TTAAGG__ACAGGTGG______
16._NA_45
__CG__TTAAGG__ACAGGTGG______
 7172737475767778798081828384
_Input profile
AACTAACCACAACCCGCCAACCCCTTCC
1._GC-01-111-6-08
AACTAACCACAACCCGCCAACCCCTTCC
2._NA_45
AACT________CCCG______CCTTCC
3._NA_45
AACT________CCCG______CCTTCC
4._GC-01-111-6-08
AACTAACCACAACCCGCCAACCCCTTCC
5._GC-01-111-6-08
AACTAACCACAACCCGCCAACCCCTTCC
6._GC-01-111-6-08
AACTAACCACAACCCGCCAACCCCTTCC
7._GC-01-111-6-08
AACTAACCACAACCCGCCAACCCCTTCC
8._GC-01-111-6-08
AACTAACCACAACCCGCCAACCCCTTCC
9._GC-01-111-6-08
AACTAACCACAACCCGCCAACCCCTTCC
10._NA_45
AACT________CCCG______CCTTCC
11._NA_45
AACT________CCCG______CCTTCC
12._NA_45
AACT________CCCG______CCTTCC
13._NA_45
AACT________CCCG______CCTTCC
14._NA_45
AACT________CCCG______CCTTCC
15._NA_45
AACT________CCCG______CCTTCC
16._NA_45
AACT________CCCG______CCTTCC
 8586878889909192      
_Input profile
TTAACCCTTTTTTTGGX_XX_XX_XX_XX_XX_X
1._GC-01-111-6-08
TTAACCCTTTTTTTGGX_XX_XX_XX_XX_XX_X
2._NA_45
__AA__CTTTTT____X_XX_XX_XX_XX_XX_X
3._NA_45
__AA__CTTTTT____X_XX_XX_XX_XX_XX_X
4._GC-01-111-6-08
TTAACCCTTTTTTTGGX_XX_XX_XX_XX_XX_X
5._GC-01-111-6-08
TTAACCCTTTTTTTGGX_XX_XX_XX_XX_XX_X
6._GC-01-111-6-08
TTAACCCTTTTTTTGGX_XX_XX_XX_XX_XX_X
7._GC-01-111-6-08
TTAACCCTTTTTTTGGX_XX_XX_XX_XX_XX_X
8._GC-01-111-6-08
TTAACCCTTTTTTTGGX_XX_XX_XX_XX_XX_X
9._GC-01-111-6-08
TTAACCCTTTTTTTGGX_XX_XX_XX_XX_XX_X
10._NA_45
__AA__CTTTTT____X_XX_XX_XX_XX_XX_X
11._NA_45
__AA__CTTTTT____X_XX_XX_XX_XX_XX_X
12._NA_45
__AA__CTTTTT____X_XX_XX_XX_XX_XX_X
13._NA_45
__AA__CTTTTT____X_XX_XX_XX_XX_XX_X
14._NA_45
__AA__CTTTTT____X_XX_XX_XX_XX_XX_X
15._NA_45
__AA__CTTTTT____X_XX_XX_XX_XX_XX_X
16._NA_45
__AA__CTTTTT____X_XX_XX_XX_XX_XX_X

Input profile: NA_45 GC-01-111-6-08

 
Mars Center for Cocoa Science, Brazil
Location: Tree: 9
Notes: 9
 Mars, 2018

1._NA_45 GC-01-111-6-08

identical
91 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 14
Notes: 14 > FP3
 Mars, 2018

2._NA_45

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1608 9
 Dapeng Zhang, 2016

3._NA_45

identical
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1608 14 > F
 Dapeng Zhang, 2016

4._NA_45 GC-01-111-6-08

99.5 %
92 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 11
Notes: 11 > FP2
 Mars, 2018

5._NA_45 GC-01-111-6-08

99.5 %
92 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 10
Notes: 10
 Mars, 2018

6._NA_45 GC-01-111-6-08

99.5 %
92 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: 4
 Mars, 2018

7._NA_45 GC-01-111-6-08

99.5 %
92 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3 > FP4
 Mars, 2018

8._NA_45 GC-01-111-6-08

99.5 %
92 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2
 Mars, 2018

9._NA_45 GC-01-111-6-08

99.5 %
92 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1 > FP1
 Mars, 2018

10._NA_45

98.7 %
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1608 4
 Dapeng Zhang, 2016

11._NA_45

98.7 %
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1608 2
 Dapeng Zhang, 2016
Population Assignment: 
 Dapeng Zhang, 2016

12._NA_45

98.7 %
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1608 10
 Dapeng Zhang, 2016

13._NA_45

98.7 %
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1608 1 > FP
 Dapeng Zhang, 2016

14._NA_45

98.7 %
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1608 11 > F
 Dapeng Zhang, 2016

15._NA_45

98.7 %
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1608 3 > FP
 Dapeng Zhang, 2016

16._NA_45

98.7 %
39 shared markers

International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: Marper D 673
 Dapeng Zhang, 2016

 


  Key to SNP Markers

1TcSNP1075 2TcSNP534 3TcSNP591 4TcSNP42 5TcSNP418
6TcSNP702 7TcSNP1096 8TcSNP1060 9TcSNP1165 10TcSNP429
11TcSNP75 12TcSNP891 13TcSNP122 14TcSNP316 15TcSNP521
16TcSNP1062 17TcSNP836 18TcSNP878 19TcSNP929 20TcSNP413
21TcSNP653 22TcSNP1149 23TcSNP174 24TcSNP32 25TcSNP372
26TcSNP448 27TcSNP872 28TcSNP953 29TcSNP1034 30TcSNP1175
31TcSNP1111 32TcSNP577 33TcSNP90 34TcSNP998 35TcSNP150
36TcSNP28 37TcSNP751 38TcSNP1484 39TcSNP602 40TcSNP561
41TcSNP894 42TcSNP1063 43TcSNP1126 44TcSNP1270 45TcSNP606
46TcSNP329 47TcSNP689 48TcSNP944 49TcSNP1242 50TcSNP1383
51TcSNP547 52TcSNP776 53TcSNP1309 54TcSNP151 55TcSNP1520
56TcSNP799 57TcSNP899 58TcSNP226 59TcSNP1439 60TcSNP1442
61TcSNP193 62TcSNP25 63TcSNP364 64TcSNP144 65TcSNP230
66TcSNP560 67TcSNP723 68TcSNP731 69TcSNP701 70TcSNP1041
71TcSNP645 72TcSNP917 73Tcm003s01336581 74Tcm001s00947643 75Tcm006s26664133
76Tcm002s20575712 77TcSNP529 78TcSNP1458 79TcSNP60 80TcSNP430
81TcSNP823 82TcSNP619 83TcSNP994 84TcSNP1144 85TcSNP1156
86TcSNP469 87TcSNP999 88TcSNP242 89TcSNP1253 90TcSNP1414
91TcSNP154 92TcSNP240