SNP Profiles of NA 45   View Data

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 Key

 1234567891011121314
_Input profile
AATTAAGGGGCCCCCCCCGGTTCCTTAA
1._GC-01-111-6-08
AATTAAGGGGCCCCCCCCGGTTCCTTAA
2._GC-01-111-6-08
AATTAAGGGGCCCCCCCCGGTTCCTTAA
3._GC-01-111-6-08
AATTAAGGGGCCCCCCCCGGTTCCTTAA
4._GC-01-111-6-08
AATTAAGGGGCCCCCCCCGGTTCCTTAA
5._GC-01-111-6-08
AATTAAGGGGCCCCCCCCGGTTCCTTAA
6._GC-01-111-6-08
AATTAAGGGGCCCCCCCCGGTTCCTTAA
7._NA_45
AATTAA____CCCCGG_CC__
8._NA_45
AATTAA____CCCCGG_CC__
9._NA_45
AATTAA____CCCCGG_CC__
10._NA_45
AATTAA____CCCCGG_CC__
11._NA_45
AATTAA____CCCCGG_CC__
12._NA_45
AATTAA____CCCCGG_CC__
13._NA_45
AATTAA____CCCCGG_CC__
14._NA_45
AATTAA____CCCCGG_CC__
15._GC-01-111-6-08
AATTAAGGGGCCCCCCCCGGTTCCTTAA
16._NA_45
AATTAA____CCCCGG_CC__
 1516171819202122232425262728
_Input profile
AAGGGGCCGGCTAATTGGTTAACCCGAA
1._GC-01-111-6-08
AAGGGGCCGGCTAATTGGTTAACCCGAA
2._GC-01-111-6-08
AAGGGGCCGGCTAATTGGTTAACCCGAA
3._GC-01-111-6-08
AAGGGGCCGGCTAATTGGTTAACCCGAA
4._GC-01-111-6-08
AAGGGGCCGGCTAATTGGTTAACCCGAA
5._GC-01-111-6-08
AAGGGGCCGGCTAATTGGTTAACCCGAA
6._GC-01-111-6-08
AAGGGGCCGGCTAATTGGTTAACCCGAA
7._NA_45
_GG__GG____TTAA_CGAA
8._NA_45
_GG__GG____TTAA_CGAA
9._NA_45
_GG__GG____TTAA_CGAA
10._NA_45
_GG__GG____TTAA_CGAA
11._NA_45
_GG__GG____TTAA_CGAA
12._NA_45
_GG__GG____TTAA_CGAA
13._NA_45
_GG__GG____TTAA_CGAA
14._NA_45
_GG__GG____TTAA_CGAA
15._GC-01-111-6-08
AAGGGGCCGGCTAATTGGTTAACCCGAA
16._NA_45
_GG__GG____TTAA_CGAA
 2930313233343536373839404142
_Input profile
TTGGGGGGCCAGGGGGTTAACCGGCCGG
1._GC-01-111-6-08
TTGGGGGGCCAGGGGGTTAACCGGCCGG
2._GC-01-111-6-08
TTGGGGGGCCAGGGGGTTAACCGGCCGG
3._GC-01-111-6-08
TTGGGGGGCCAGGGGGTTAACCGGCCGG
4._GC-01-111-6-08
TTGGGGGGCCAGGGGGTTAACCGGCCGG
5._GC-01-111-6-08
TTGGGGGGCCAGGGGGTTAACCGGCCGG
6._GC-01-111-6-08
TTGGGGGGCCAGGGGGTTAACCGGCCGG
7._NA_45
___GG_AGGG__AA____
8._NA_45
___GG_AGGG__AA____
9._NA_45
___GG_AGGG__AA____
10._NA_45
___GG_AGGG__AA____
11._NA_45
___GG_AGGG__AA____
12._NA_45
___GG_AGGG__AA____
13._NA_45
___GG_AGGG__AA____
14._NA_45
___GG_AGGG__AA____
15._GC-01-111-6-08
TTGGGGGGCCAGGGGGTTAACCGGCCGG
16._NA_45
___GG_AGGG__AA____
 4344454647484950515253545556
_Input profile
TTCTAAGGAACCCCGGGGGGTTCCCCTT
1._GC-01-111-6-08
TTCTAAGGAACCCCGGGGGGTTCCCCTT
2._GC-01-111-6-08
TTCTAAGGAACCCCGGGGGGTTCCCCTT
3._GC-01-111-6-08
TTCTAAGGAACCCCGGGGGGTTCCCCTT
4._GC-01-111-6-08
TTCTAAGGAACCCCGGGGGGTTCCCCTT
5._GC-01-111-6-08
TTCTAAGGAACCCCGGGGGGTTCCCCTT
6._GC-01-111-6-08
TTCTAAGGAACCCCGGGGGGTT_CCTT
7._NA_45
_CT_________CCCC_
8._NA_45
_CT_________CCCC_
9._NA_45
_CT_________CCCC_
10._NA_45
_CT_________CCCC_
11._NA_45
_CT_________CCCC_
12._NA_45
_CT_________CCCC_
13._NA_45
_CT_________CCCC_
14._NA_45
_CT__________CC_
15._GC-01-111-6-08
TTCTAAGGAACCCCGGGGGGTTCTCCTT
16._NA_45
_CT_________CTCC_
 5758596061626364656667686970
_Input profile
GGCGCCTTAAGGGGACAGGTGGGGTTCC
1._GC-01-111-6-08
GGCGCCTTAAGGGGACAGGTGGGGTTCC
2._GC-01-111-6-08
GGCGCCTTAAGGGGACAGGTGGGGTTCC
3._GC-01-111-6-08
GGCGCCTTAAGGGGACAGGTGGGGTTCC
4._GC-01-111-6-08
GGCGCCTTAAGGGGACAGGTGGGGTTCC
5._GC-01-111-6-08
GGCGCCTTAAGGGGACAGGTGGGGTTCC
6._GC-01-111-6-08
GGCGCCTTAAGGGGACAGGTGGGGTTCC
7._NA_45
_CG_TTAAGG_ACAGGTGG___
8._NA_45
_CG_TTAAGG_ACAGGTGG___
9._NA_45
_CG_TTAAGG_ACAGGTGG___
10._NA_45
_CG_TTAAGG_ACAGGTGG___
11._NA_45
_CG_TTAAGG_ACAGGTGG___
12._NA_45
_CG_TTAAGG_ACAGGTGG___
13._NA_45
_CG_TTAAGG_ACAGGTGG___
14._NA_45
_CG_TTAAGG_ACAGGTGG___
15._GC-01-111-6-08
GGCGCCTTAAGGGGACAGGTGGGGTTCC
16._NA_45
_CG_TTAAGG_ACAGGTGG___
 7172737475767778798081828384
_Input profile
AACTAAAACCACAACCCGCCAACCCCTT
1._GC-01-111-6-08
AACTAAAACCACAACCCGCCAACCCCTT
2._GC-01-111-6-08
AACTAAAACCACAACCCGCCAACCCCTT
3._GC-01-111-6-08
AACTAAAACCACAACCCGCCAACCCCTT
4._GC-01-111-6-08
AACTAAAACCACAACCCGCCAACCCCTT
5._GC-01-111-6-08
AACTAAAACCACAACCCGCCAACCCCTT
6._GC-01-111-6-08
AACTAAAACCACAACCCGCCAACCCCTT
7._NA_45
AACT_____CCCG___CCTT
8._NA_45
AACT_____CCCG___CCTT
9._NA_45
AACT_____CCCG___CCTT
10._NA_45
AACT_____CCCG___CCTT
11._NA_45
AACT_____CCCG___CCTT
12._NA_45
AACT_____CCCG___CCTT
13._NA_45
AACT_____CCCG___CCTT
14._NA_45
AACT_____CCCG___CCTT
15._GC-01-111-6-08
AACTAA_CCACAACCCGCCAACCCCTT
16._NA_45
AACT_____CCCG___CCTT
 858687888990919293     
_Input profile
CCTTAACCCTTTTTTTGGX_XX_XX_XX_XX_X
1._GC-01-111-6-08
CCTTAACCCTTTTTTTGGX_XX_XX_XX_XX_X
2._GC-01-111-6-08
CCTTAACCCTTTTTTTGGX_XX_XX_XX_XX_X
3._GC-01-111-6-08
CCTTAACCCTTTTTTTGGX_XX_XX_XX_XX_X
4._GC-01-111-6-08
CCTTAACCCTTTTTTTGGX_XX_XX_XX_XX_X
5._GC-01-111-6-08
CCTTAACCCTTTTTTTGGX_XX_XX_XX_XX_X
6._GC-01-111-6-08
CCTTAACCCTTTTTTTGGX_XX_XX_XX_XX_X
7._NA_45
CC_AA_CTTTTT__X_XX_XX_XX_XX_X
8._NA_45
CC_AA_CTTTTT__X_XX_XX_XX_XX_X
9._NA_45
CC_AA_CTTTTT__X_XX_XX_XX_XX_X
10._NA_45
CC_AA_CTTTTT__X_XX_XX_XX_XX_X
11._NA_45
CC_AA_CTTTTT__X_XX_XX_XX_XX_X
12._NA_45
CC_AA_CTTTTT__X_XX_XX_XX_XX_X
13._NA_45
CC_AA_CTTTTT__X_XX_XX_XX_XX_X
14._NA_45
CC_AA_CTTTTT__X_XX_XX_XX_XX_X
15._GC-01-111-6-08
CCTTAACCCTTTTTTTGGX_XX_XX_XX_XX_X
16._NA_45
CC_AA_CTTTTT__X_XX_XX_XX_XX_X

Input profile: NA_45 GC-01-111-6-08

 
Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3 > FP4
 Mars, 2018

1._NA_45 GC-01-111-6-08

identical
93 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 11
Notes: 11 > FP2
 Mars, 2018

2._NA_45 GC-01-111-6-08

identical
93 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 10
Notes: 10
 Mars, 2018

3._NA_45 GC-01-111-6-08

identical
93 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: 4
 Mars, 2018

4._NA_45 GC-01-111-6-08

identical
93 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2
 Mars, 2018

5._NA_45 GC-01-111-6-08

identical
93 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1 > FP1
 Mars, 2018

6._NA_45 GC-01-111-6-08

identical
92 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 14
Notes: 14 > FP3
 Mars, 2018

7._NA_45

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1608 4
 Dapeng Zhang, 2016

8._NA_45

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1608 2
 Dapeng Zhang, 2016
Population Assignment: 
 Dapeng Zhang, 2016

9._NA_45

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1608 10
 Dapeng Zhang, 2016

10._NA_45

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1608 1 > FP
 Dapeng Zhang, 2016

11._NA_45

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1608 11 > F
 Dapeng Zhang, 2016

12._NA_45

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1608 3 > FP
 Dapeng Zhang, 2016

13._NA_45

identical
39 shared markers

International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: Marper D 673
 Dapeng Zhang, 2016

14._NA_45

identical
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1608 14 > F
 Dapeng Zhang, 2016

15._NA_45 GC-01-111-6-08

99.5 %
92 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 9
Notes: 9
 Mars, 2018

16._NA_45

98.7 %
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1608 9
 Dapeng Zhang, 2016

 


  Key to SNP Markers

1TcSNP1075 2TcSNP534 3TcSNP591 4TcSNP42 5TcSNP418
6TcSNP702 7TcSNP1096 8TcSNP1060 9TcSNP1165 10TcSNP429
11TcSNP75 12TcSNP891 13TcSNP122 14TcSNP316 15TcSNP521
16TcSNP1062 17TcSNP836 18TcSNP878 19TcSNP929 20TcSNP413
21TcSNP653 22TcSNP1149 23TcSNP174 24TcSNP32 25TcSNP372
26TcSNP448 27TcSNP872 28TcSNP953 29TcSNP1034 30TcSNP1175
31TcSNP1111 32TcSNP577 33TcSNP90 34TcSNP998 35TcSNP150
36TcSNP28 37TcSNP751 38TcSNP1484 39TcSNP602 40TcSNP561
41TcSNP894 42TcSNP1063 43TcSNP1126 44TcSNP1270 45TcSNP606
46TcSNP329 47TcSNP689 48TcSNP944 49TcSNP1242 50TcSNP1383
51TcSNP547 52TcSNP776 53TcSNP1309 54TcSNP151 55TcSNP1520
56TcSNP799 57TcSNP899 58TcSNP226 59TcSNP1439 60TcSNP1442
61TcSNP193 62TcSNP25 63TcSNP364 64TcSNP144 65TcSNP230
66TcSNP560 67TcSNP723 68TcSNP731 69TcSNP701 70TcSNP1041
71TcSNP645 72TcSNP917 73Tcm003s01336581 74Tcm003s07402719 75Tcm001s00947643
76Tcm006s26664133 77Tcm002s20575712 78TcSNP529 79TcSNP1458 80TcSNP60
81TcSNP430 82TcSNP823 83TcSNP619 84TcSNP994 85TcSNP1144
86TcSNP1156 87TcSNP469 88TcSNP999 89TcSNP242 90TcSNP1253
91TcSNP1414 92TcSNP154 93TcSNP240