SNP Profiles of NA-45   View Data

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 Key

 1 2 3 4 5 6 7 8 9 10 11 12 13 14
_Input profile
AATTAAGGGGCCCCCCCCGGTTCCTTAA
1._GC-01-111-6-08
AATTAAGGGGCCCCCCCCGGTTCCTTAA
2._GC-01-111-6-08
AATTAAGGGGCCCCCCCCGGTTCCTTAA
3._GC-01-111-6-08
AATTAAGGGGCCCCCCCCGGTTCCTTAA
4._GC-01-111-6-08
AATTAAGGGGCCCCCCCCGGTTCCTTAA
5._GC-01-111-6-08
AATTAAGGGGCCCCCCCCGGTTCCTTAA
6._GC-01-111-6-08
AATTAAGGGGCCCCCCCCGGTTCCTTAA
7._NA_45
AATTAA________CCCCGG__CC____
8._NA_45
AATTAA________CCCCGG__CC____
9._NA_45
AATTAA________CCCCGG__CC____
10._NA_45
AATTAA________CCCCGG__CC____
11._NA_45
AATTAA________CCCCGG__CC____
12._NA_45
AATTAA________CCCCGG__CC____
13._NA_45
AATTAA________CCCCGG__CC____
14._NA_45
AATTAA________CCCCGG__CC____
15._GC-01-111-6-08
AATTAAGGGGCCCCCCCCGGTTCCTTAA
16._NA_45
AATTAA________CCCCGG__CC____
 15 16 17 18 19 20 21 22 23 24 25 26 27 28
_Input profile
AAGGGGCCGGCTAATTGGTTAACCCGAA
1._GC-01-111-6-08
AAGGGGCCGGCTAATTGGTTAACCCGAA
2._GC-01-111-6-08
AAGGGGCCGGCTAATTGGTTAACCCGAA
3._GC-01-111-6-08
AAGGGGCCGGCTAATTGGTTAACCCGAA
4._GC-01-111-6-08
AAGGGGCCGGCTAATTGGTTAACCCGAA
5._GC-01-111-6-08
AAGGGGCCGGCTAATTGGTTAACCCGAA
6._GC-01-111-6-08
AAGGGGCCGGCTAATTGGTTAACCCGAA
7._NA_45
__GG____GG________TTAA__CGAA
8._NA_45
__GG____GG________TTAA__CGAA
9._NA_45
__GG____GG________TTAA__CGAA
10._NA_45
__GG____GG________TTAA__CGAA
11._NA_45
__GG____GG________TTAA__CGAA
12._NA_45
__GG____GG________TTAA__CGAA
13._NA_45
__GG____GG________TTAA__CGAA
14._NA_45
__GG____GG________TTAA__CGAA
15._GC-01-111-6-08
AAGGGGCCGGCTAATTGGTTAACCCGAA
16._NA_45
__GG____GG________TTAA__CGAA
 29 30 31 32 33 34 35 36 37 38 39 40 41 42
_Input profile
TTGGGGGGCCAGGGGGTTAACCGGCCGG
1._GC-01-111-6-08
TTGGGGGGCCAGGGGGTTAACCGGCCGG
2._GC-01-111-6-08
TTGGGGGGCCAGGGGGTTAACCGGCCGG
3._GC-01-111-6-08
TTGGGGGGCCAGGGGGTTAACCGGCCGG
4._GC-01-111-6-08
TTGGGGGGCCAGGGGGTTAACCGGCCGG
5._GC-01-111-6-08
TTGGGGGGCCAGGGGGTTAACCGGCCGG
6._GC-01-111-6-08
TTGGGGGGCCAGGGGGTTAACCGGCCGG
7._NA_45
______GG__AGGG____AA________
8._NA_45
______GG__AGGG____AA________
9._NA_45
______GG__AGGG____AA________
10._NA_45
______GG__AGGG____AA________
11._NA_45
______GG__AGGG____AA________
12._NA_45
______GG__AGGG____AA________
13._NA_45
______GG__AGGG____AA________
14._NA_45
______GG__AGGG____AA________
15._GC-01-111-6-08
TTGGGGGGCCAGGGGGTTAACCGGCCGG
16._NA_45
______GG__AGGG____AA________
 43 44 45 46 47 48 49 50 51 52 53 54 55 56
_Input profile
TTCTAAGGAACCCCGGGGGGTTCCCCTT
1._GC-01-111-6-08
TTCTAAGGAACCCCGGGGGGTTCCCCTT
2._GC-01-111-6-08
TTCTAAGGAACCCCGGGGGGTTCCCCTT
3._GC-01-111-6-08
TTCTAAGGAACCCCGGGGGGTTCCCCTT
4._GC-01-111-6-08
TTCTAAGGAACCCCGGGGGGTTCCCCTT
5._GC-01-111-6-08
TTCTAAGGAACCCCGGGGGGTTCCCCTT
6._GC-01-111-6-08
TTCTAAGGAACCCCGGGGGGTT__CCTT
7._NA_45
__CT__________________CCCC__
8._NA_45
__CT__________________CCCC__
9._NA_45
__CT__________________CCCC__
10._NA_45
__CT__________________CCCC__
11._NA_45
__CT__________________CCCC__
12._NA_45
__CT__________________CCCC__
13._NA_45
__CT__________________CCCC__
14._NA_45
__CT____________________CC__
15._GC-01-111-6-08
TTCTAAGGAACCCCGGGGGGTTCTCCTT
16._NA_45
__CT__________________CTCC__
 57 58 59 60 61 62 63 64 65 66 67 68 69 70
_Input profile
GGCGCCTTAAGGGGACAGGTGGGGTTCC
1._GC-01-111-6-08
GGCGCCTTAAGGGGACAGGTGGGGTTCC
2._GC-01-111-6-08
GGCGCCTTAAGGGGACAGGTGGGGTTCC
3._GC-01-111-6-08
GGCGCCTTAAGGGGACAGGTGGGGTTCC
4._GC-01-111-6-08
GGCGCCTTAAGGGGACAGGTGGGGTTCC
5._GC-01-111-6-08
GGCGCCTTAAGGGGACAGGTGGGGTTCC
6._GC-01-111-6-08
GGCGCCTTAAGGGGACAGGTGGGGTTCC
7._NA_45
__CG__TTAAGG__ACAGGTGG______
8._NA_45
__CG__TTAAGG__ACAGGTGG______
9._NA_45
__CG__TTAAGG__ACAGGTGG______
10._NA_45
__CG__TTAAGG__ACAGGTGG______
11._NA_45
__CG__TTAAGG__ACAGGTGG______
12._NA_45
__CG__TTAAGG__ACAGGTGG______
13._NA_45
__CG__TTAAGG__ACAGGTGG______
14._NA_45
__CG__TTAAGG__ACAGGTGG______
15._GC-01-111-6-08
GGCGCCTTAAGGGGACAGGTGGGGTTCC
16._NA_45
__CG__TTAAGG__ACAGGTGG______
 71 72 73 74 75 76 77 78 79 80 81 82 83 84
_Input profile
AACTAAAACCACAACCCGCCAACCCCTT
1._GC-01-111-6-08
AACTAAAACCACAACCCGCCAACCCCTT
2._GC-01-111-6-08
AACTAAAACCACAACCCGCCAACCCCTT
3._GC-01-111-6-08
AACTAAAACCACAACCCGCCAACCCCTT
4._GC-01-111-6-08
AACTAAAACCACAACCCGCCAACCCCTT
5._GC-01-111-6-08
AACTAAAACCACAACCCGCCAACCCCTT
6._GC-01-111-6-08
AACTAAAACCACAACCCGCCAACCCCTT
7._NA_45
AACT__________CCCG______CCTT
8._NA_45
AACT__________CCCG______CCTT
9._NA_45
AACT__________CCCG______CCTT
10._NA_45
AACT__________CCCG______CCTT
11._NA_45
AACT__________CCCG______CCTT
12._NA_45
AACT__________CCCG______CCTT
13._NA_45
AACT__________CCCG______CCTT
14._NA_45
AACT__________CCCG______CCTT
15._GC-01-111-6-08
AACTAA__CCACAACCCGCCAACCCCTT
16._NA_45
AACT__________CCCG______CCTT
 85 86 87 88 89 90 91 92 93      
_Input profile
CCTTAACCCTTTTTTTGGX_XX_XX_XX_XX_X
1._GC-01-111-6-08
CCTTAACCCTTTTTTTGGX_XX_XX_XX_XX_X
2._GC-01-111-6-08
CCTTAACCCTTTTTTTGGX_XX_XX_XX_XX_X
3._GC-01-111-6-08
CCTTAACCCTTTTTTTGGX_XX_XX_XX_XX_X
4._GC-01-111-6-08
CCTTAACCCTTTTTTTGGX_XX_XX_XX_XX_X
5._GC-01-111-6-08
CCTTAACCCTTTTTTTGGX_XX_XX_XX_XX_X
6._GC-01-111-6-08
CCTTAACCCTTTTTTTGGX_XX_XX_XX_XX_X
7._NA_45
CC__AA__CTTTTT____X_XX_XX_XX_XX_X
8._NA_45
CC__AA__CTTTTT____X_XX_XX_XX_XX_X
9._NA_45
CC__AA__CTTTTT____X_XX_XX_XX_XX_X
10._NA_45
CC__AA__CTTTTT____X_XX_XX_XX_XX_X
11._NA_45
CC__AA__CTTTTT____X_XX_XX_XX_XX_X
12._NA_45
CC__AA__CTTTTT____X_XX_XX_XX_XX_X
13._NA_45
CC__AA__CTTTTT____X_XX_XX_XX_XX_X
14._NA_45
CC__AA__CTTTTT____X_XX_XX_XX_XX_X
15._GC-01-111-6-08
CCTTAACCCTTTTTTTGGX_XX_XX_XX_XX_X
16._NA_45
CC__AA__CTTTTT____X_XX_XX_XX_XX_X

Input profile: NA_45 GC-01-111-6-08

 
Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1 > FP1
 Mars, 2018

1._NA_45 GC-01-111-6-08

identical
93 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 11
Notes: 11 > FP2
 Mars, 2018

2._NA_45 GC-01-111-6-08

identical
93 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 10
Notes: 10
 Mars, 2018

3._NA_45 GC-01-111-6-08

identical
93 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: 4
 Mars, 2018

4._NA_45 GC-01-111-6-08

identical
93 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3 > FP4
 Mars, 2018

5._NA_45 GC-01-111-6-08

identical
93 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2
 Mars, 2018

6._NA_45 GC-01-111-6-08

identical
92 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 14
Notes: 14 > FP3
 Mars, 2018

7._NA_45

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1608 4
 Dapeng Zhang, 2016

8._NA_45

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1608 2
 Dapeng Zhang, 2016

9._NA_45

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1608 10
 Dapeng Zhang, 2016

10._NA_45

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1608 1 > FP
 Dapeng Zhang, 2016

11._NA_45

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1608 11 > F
 Dapeng Zhang, 2016

12._NA_45

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1608 3 > FP
 Dapeng Zhang, 2016

13._NA_45

identical
39 shared markers

International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: Marper D 673
 Dapeng Zhang, 2016

14._NA_45

identical
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1608 14 > F
 Dapeng Zhang, 2016

15._NA_45 GC-01-111-6-08

99.5 %
92 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 9
Notes: 9
 Mars, 2018

16._NA_45

98.7 %
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1608 9
 Dapeng Zhang, 2016

 


  Key to SNP Markers

1TcSNP1075 2TcSNP534 3TcSNP591 4TcSNP42 5TcSNP418
6TcSNP702 7TcSNP1096 8TcSNP1060 9TcSNP1165 10TcSNP429
11TcSNP75 12TcSNP891 13TcSNP122 14TcSNP316 15TcSNP521
16TcSNP1062 17TcSNP836 18TcSNP878 19TcSNP929 20TcSNP413
21TcSNP653 22TcSNP1149 23TcSNP174 24TcSNP32 25TcSNP372
26TcSNP448 27TcSNP872 28TcSNP953 29TcSNP1034 30TcSNP1175
31TcSNP1111 32TcSNP577 33TcSNP90 34TcSNP998 35TcSNP150
36TcSNP28 37TcSNP751 38TcSNP1484 39TcSNP602 40TcSNP561
41TcSNP894 42TcSNP1063 43TcSNP1126 44TcSNP1270 45TcSNP606
46TcSNP329 47TcSNP689 48TcSNP944 49TcSNP1242 50TcSNP1383
51TcSNP547 52TcSNP776 53TcSNP1309 54TcSNP151 55TcSNP1520
56TcSNP799 57TcSNP899 58TcSNP226 59TcSNP1439 60TcSNP1442
61TcSNP193 62TcSNP25 63TcSNP364 64TcSNP144 65TcSNP230
66TcSNP560 67TcSNP723 68TcSNP731 69TcSNP701 70TcSNP1041
71TcSNP645 72TcSNP917 73Tcm003s01336581 74Tcm003s07402719 75Tcm001s00947643
76Tcm006s26664133 77Tcm002s20575712 78TcSNP529 79TcSNP1458 80TcSNP60
81TcSNP430 82TcSNP823 83TcSNP619 84TcSNP994 85TcSNP1144
86TcSNP1156 87TcSNP469 88TcSNP999 89TcSNP242 90TcSNP1253
91TcSNP1414 92TcSNP154 93TcSNP240