SNP Profiles of NA 286   View Data

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 Key

 1234567891011121314
_Input profile
AAAACCAAGGGGCCCCCCCCGGTTCCTT
1._GC-01-101-5-18
AAAACCAAGGGGCCCCCCCCGGTTCCTT
2._NA_286
AAAACCAA________CCCCGG__CC__
3._NA_286
AAAACCAA________CCCCGG__CC__
4._NA_286
AAACCCAA________CCCCGG__CC__
5._GC-01-101-5-18
AAAC__AAGGGG__GGGG__GGAAGGAA
 1516171819202122232425262728
_Input profile
AAAAAAGGCCGGTTAATTGGTTAACCGG
1._GC-01-101-5-18
AAAAAAGGCCGGTTAATTGGTTAACCGG
2._NA_286
____AA____GG________TTAA__GG
3._NA_286
____AA____GG________TTAA__GG
4._NA_286
____AA____GG________TTAA__GG
5._GC-01-101-5-18
TTAAAACC__GGAAAAAAGGTTAAGGCC
 2930313233343536373839404142
_Input profile
AATTGGGGGGCCGGGGGGTTAACCGGCC
1._GC-01-101-5-18
AATTGGGGGGCCGGGGGGTTAACCGGCC
2._NA_286
AA______GG__GGGG____AA______
3._NA_286
AA______GG__GGGG____AA______
4._NA_286
AA______GG__GGGG____AA______
5._GC-01-101-5-18
AAAACCGGGGCCGGCCCCAAAAGGGGGG
 4344454647484950515253545556
_Input profile
GGTTTTAAGGAACCCCGGAAGGTTCCCC
1._GC-01-101-5-18
GGTTTTAAGGAACCCCGGAAGGTTCCCC
2._NA_286
____TT__________________CCCC
3._NA_286
____TT__________________CCCC
4._NA_286
____TT__________________CCCC
5._GC-01-101-5-18
CC__AA__GGAAGG__GGAACCAAGGGG
 5758596061626364656667686970
_Input profile
TTGGCCCCTTAAGGGGCCAAGGGGGGTT
1._GC-01-101-5-18
TTGGCCCCTTAAGGGGCCAAGGGGGGTT
2._NA_286
____CC__TTAAGG__CCAAGGGG____
3._NA_286
____CC__TTAAGG__CCAAGGGG____
4._NA_286
____CC__TTAAGG__CCAAGGGG____
5._GC-01-101-5-18
AAGGGGGGAAAAGGGGCCAACCCCGG__
 7172737475767778798081828384
_Input profile
CCAACCACAACCCCAACCGGCCAACCCC
1._GC-01-101-5-18
CCAACCACAACCCCAACCGGCCAACCCC
2._NA_286
__AACC__________CCGG______CC
3._NA_286
__AACC__________CCGG______CC
4._NA_286
__AACC__________CCGG______CC
5._GC-01-101-5-18
____GGACAACCCC__CCCCGGAACCGG
 85868788899091929394    
_Input profile
TTCCTTAACCCCTTTTTTGGX_XX_XX_XX_X
1._GC-01-101-5-18
TTCCTTAACCCC__TTTTGGX_XX_XX_XX_X
2._NA_286
TTCC__AA__CCTTTT____X_XX_XX_XX_X
3._NA_286
TTCC__AA__CC__TT____X_XX_XX_XX_X
4._NA_286
TTCC__AA__CCTTTT____X_XX_XX_XX_X
5._GC-01-101-5-18
AA__AA____GGAAAAAAGGX_XX_XX_XX_X

Input profile: NA_286 GC-01-101-5-18

 
Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: 4 > FP3
 Mars, 2018

1._NA_286 GC-01-101-5-18

identical
93 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 11
Notes: 11 > FP2
 Mars, 2018

2._NA_286

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1518 4 > FP
 Dapeng Zhang, 2016

3._NA_286

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1518 11 > F
 Dapeng Zhang, 2016
Population Assignment: 
 Dapeng Zhang, 2016

4._NA_286

98.8 %
40 shared markers

International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: 5B F511 T4
 Dapeng Zhang, 2016

5._NA_286 GC-01-101-5-18

48.1 %
80 shared markers

Mars Center for Cocoa Science, Brazil
Location: Field: 1, Block: 5, Rep: 18, Tree: 11 > FP2
Notes: MCCS_Structure_refs_above_0.9membership
 Mars, 2018

 


  Key to SNP Markers

1TcSNP1075 2TcSNP1350 3TcSNP534 4TcSNP591 5TcSNP42
6TcSNP418 7TcSNP702 8TcSNP1096 9TcSNP1060 10TcSNP1165
11TcSNP429 12TcSNP75 13TcSNP891 14TcSNP122 15TcSNP316
16TcSNP521 17TcSNP1062 18TcSNP836 19TcSNP878 20TcSNP929
21TcSNP413 22TcSNP653 23TcSNP1149 24TcSNP174 25TcSNP32
26TcSNP372 27TcSNP448 28TcSNP872 29TcSNP953 30TcSNP1034
31TcSNP1175 32TcSNP1111 33TcSNP577 34TcSNP90 35TcSNP998
36TcSNP150 37TcSNP28 38TcSNP751 39TcSNP1484 40TcSNP602
41TcSNP561 42TcSNP894 43TcSNP1063 44TcSNP1126 45TcSNP1270
46TcSNP606 47TcSNP329 48TcSNP689 49TcSNP944 50TcSNP1242
51TcSNP1383 52TcSNP547 53TcSNP776 54TcSNP1309 55TcSNP151
56TcSNP1520 57TcSNP799 58TcSNP899 59TcSNP226 60TcSNP1439
61TcSNP1442 62TcSNP193 63TcSNP25 64TcSNP364 65TcSNP144
66TcSNP230 67TcSNP560 68TcSNP723 69TcSNP731 70TcSNP701
71TcSNP1041 72TcSNP645 73TcSNP917 74Tcm003s01336581 75Tcm003s07402719
76Tcm001s00947643 77Tcm006s26664133 78Tcm002s20575712 79TcSNP529 80TcSNP1458
81TcSNP60 82TcSNP430 83TcSNP823 84TcSNP619 85TcSNP994
86TcSNP1144 87TcSNP1156 88TcSNP469 89TcSNP999 90TcSNP242
91TcSNP1253 92TcSNP1414 93TcSNP154 94TcSNP240