SNP Profiles of GU 123 /C View Data

Show/Hide Profiles

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_Input profile	AA	CC	CC	GG	GG	CC	CC	CC	CC	GG	TT	CC	TT	AA
1._GC-01-095-5-12	AA	CC	CC	GG	GG	CC	CC	CC	CC	GG	TT	CC	TT	AA
2._GC-01-095-5-12	AA	CC	CC	GG	GG	CC	CC	CC	CC	GG	TT	CC	TT	AA
3._GC-01-095-5-12	AA	CC	CC	GG	GG	CC	CC	CC	CC	GG	TT	CC	TT	AA
4._GC-01-095-5-12	AA	CC	CC	GG	GG	CC	CC	CC	CC	GG	TT	CC	TT	AA
5._GC-01-095-5-12	AA	CC	CC	GG	GG	CC	CC	CC	CC	GG	TT	CC	TT	AA
6._GC-01-095-5-12	AA	CC	CC	GG	GG	CC	CC	CC	CC	GG	TT	CC	TT	AA
7._GC-01-095-5-12	AA	CC	CC	GG	GG	CC	CC	CC	CC	GG	TT	CC	__	AA
8._GU_123_/C	AA	CC	CC	__	__	__	__	CC	CC	GG	__	CC	__	__
9._GU_123_/C	AA	CC	CC	__	__	__	__	CC	CC	GG	__	CC	__	__
10._GU_123_/C	AA	CC	CC	__	__	__	__	CC	CC	GG	__	CC	__	__
11._GU_123_/C	AA	CC	CC	__	__	__	__	CC	CC	GG	__	CC	__	__
12._GU_123_/C	AA	CC	CC	__	__	__	__	CC	CC	GG	__	CC	__	__
13._GU_123_/C	AA	CC	CC	__	__	__	__	CC	CC	GG	__	CC	__	__
14._GU_123_/C	AA	CC	CC	__	__	__	__	CC	CC	GG	__	CC	__	__
15._GU_123_/C	AA	CC	CC	__	__	__	__	CC	CC	GG	__	CC	__	__
16._GU_123_/C	AA	CC	CC	__	__	__	__	CC	CC	GG	__	CC	__	__
17._GC-01-95-5-12	AA	__	CC	GG	GG	__	GG	GG	__	GG	AA	GG	AA	TT

	15	16	17	18	19	20	21	22	23	24	25	26	27	28
_Input profile	CC	GG	GG	CC	GG	CC	AA	TT	GG	TT	AA	CC	GG	AA
1._GC-01-095-5-12	CC	GG	GG	CC	GG	CC	AA	TT	GG	TT	AA	CC	GG	AA
2._GC-01-095-5-12	CC	GG	GG	CC	GG	CC	AA	TT	GG	TT	AA	CC	GG	AA
3._GC-01-095-5-12	CC	GG	GG	CC	GG	CC	AA	TT	GG	TT	AA	CC	GG	AA
4._GC-01-095-5-12	CC	GG	GG	CC	GG	CC	AA	TT	GG	TT	AA	CC	GG	AA
5._GC-01-095-5-12	CC	GG	GG	CC	GG	CC	AA	TT	GG	TT	AA	CC	GG	AA
6._GC-01-095-5-12	CC	GG	GG	CC	GG	CC	AA	TT	GG	TT	AA	CC	GG	AA
7._GC-01-095-5-12	CC	GG	GG	CC	GG	CC	AA	TT	GG	TT	AA	CC	GG	AA
8._GU_123_/C	__	GG	__	__	GG	__	__	__	__	TT	AA	__	GG	AA
9._GU_123_/C	__	GG	__	__	GG	__	__	__	__	TT	AA	__	GG	AA
10._GU_123_/C	__	GG	__	__	GG	__	__	__	__	TT	AA	__	GG	AA
11._GU_123_/C	__	GG	__	__	GG	__	__	__	__	TT	AA	__	GG	AA
12._GU_123_/C	__	GG	__	__	GG	__	__	__	__	TT	AA	__	GG	AA
13._GU_123_/C	__	GG	__	__	GG	__	__	__	__	TT	AA	__	GG	AA
14._GU_123_/C	__	GG	__	__	GG	__	__	__	__	TT	AA	__	GG	AA
15._GU_123_/C	__	GG	__	__	GG	__	__	__	__	TT	AA	__	GG	AA
16._GU_123_/C	__	GG	__	__	GG	__	__	__	__	TT	AA	__	GG	AA
17._GC-01-95-5-12	CC	GG	CC	__	GG	GG	AA	AA	GG	TT	AA	GG	CC	AA

	29	30	31	32	33	34	35	36	37	38	39	40	41	42
_Input profile	TT	GG	CC	CC	AA	TT	GG	GG	GG	CC	AG	CC	GG	TT
1._GC-01-095-5-12	TT	GG	CC	CC	AA	TT	GG	GG	GG	CC	AG	CC	GG	TT
2._GC-01-095-5-12	TT	GG	CC	CC	AA	TT	GG	GG	GG	CC	AG	CC	GG	TT
3._GC-01-095-5-12	TT	GG	CC	CC	AA	TT	GG	GG	GG	CC	AG	CC	GG	TT
4._GC-01-095-5-12	TT	GG	CC	CC	AA	TT	GG	GG	GG	CC	AG	CC	GG	TT
5._GC-01-095-5-12	TT	GG	CC	CC	AA	TT	GG	GG	GG	CC	AG	CC	GG	TT
6._GC-01-095-5-12	TT	GG	CC	CC	AA	TT	GG	GG	GG	CC	AG	CC	GG	TT
7._GC-01-095-5-12	TT	GG	CC	CC	AA	TT	GG	GG	GG	CC	AG	CC	GG	TT
8._GU_123_/C	__	__	CC	__	AA	TT	__	__	GG	__	__	__	__	__
9._GU_123_/C	__	__	CC	__	AA	TT	__	__	GG	__	__	__	__	__
10._GU_123_/C	__	__	CC	__	AA	TT	__	__	GG	__	__	__	__	__
11._GU_123_/C	__	__	CC	__	AA	TT	__	__	GG	__	__	__	__	__
12._GU_123_/C	__	__	CC	__	AA	TT	__	__	GG	__	__	__	__	__
13._GU_123_/C	__	__	CC	__	AA	TT	__	__	GG	__	__	__	__	__
14._GU_123_/C	__	__	CC	__	AA	TT	__	__	GG	__	__	__	__	__
15._GU_123_/C	__	__	CC	__	AA	TT	__	__	GG	__	__	__	__	__
16._GU_123_/C	__	__	CC	__	AA	TT	__	__	GG	__	__	__	__	__
17._GC-01-95-5-12	AA	GG	CC	CC	AA	AA	CC	CC	GG	GG	AG	GG	CC	__

	43	44	45	46	47	48	49	50	51	52	53	54	55	56
_Input profile	TT	AA	GG	AA	CC	CC	GG	GG	TT	TT	TT	CC	TT	GG
1._GC-01-095-5-12	TT	AA	GG	AA	CC	CC	GG	GG	TT	TT	TT	CC	TT	GG
2._GC-01-095-5-12	TT	AA	GG	AA	CC	CC	GG	GG	TT	TT	TT	CC	TT	GG
3._GC-01-095-5-12	TT	AA	GG	AA	CC	CC	GG	GG	TT	TT	TT	CC	TT	GG
4._GC-01-095-5-12	TT	AA	GG	AA	CC	CC	GG	GG	TT	TT	TT	CC	TT	GG
5._GC-01-095-5-12	TT	AA	GG	AA	CC	CC	GG	GG	TT	TT	TT	CC	TT	GG
6._GC-01-095-5-12	TT	AA	GG	AA	CC	CC	GG	GG	TT	TT	TT	CC	TT	GG
7._GC-01-095-5-12	TT	AA	GG	AA	CC	CC	GG	GG	TT	TT	TT	CC	TT	GG
8._GU_123_/C	TT	__	__	__	__	__	__	__	__	__	TT	CC	__	__
9._GU_123_/C	TT	__	__	__	__	__	__	__	__	__	TT	CC	__	__
10._GU_123_/C	TT	__	__	__	__	__	__	__	__	__	TT	CC	__	__
11._GU_123_/C	TT	__	__	__	__	__	__	__	__	__	TT	CC	__	__
12._GU_123_/C	TT	__	__	__	__	__	__	__	__	__	TT	CC	__	__
13._GU_123_/C	TT	__	__	__	__	__	__	__	__	__	TT	CC	__	__
14._GU_123_/C	TT	__	__	__	__	__	__	__	__	__	TT	CC	__	__
15._GU_123_/C	TT	__	__	__	__	__	__	__	__	__	TT	CC	__	__
16._GU_123_/C	TT	__	__	__	__	__	__	__	__	__	TT	CC	__	__
17._GC-01-95-5-12	AA	__	GG	AA	GG	__	GG	GG	AA	AA	AA	GG	AA	GG

	57	58	59	60	61	62	63	64	65	66	67	68	69	70
_Input profile	CC	CC	CC	AA	GG	GG	AA	GG	GG	GG	AA	CC	CC	AA
1._GC-01-095-5-12	CC	CC	CC	AA	GG	GG	AA	GG	GG	GG	AA	CC	CC	AA
2._GC-01-095-5-12	CC	CC	CC	AA	GG	GG	AA	GG	GG	GG	AA	CC	CC	AA
3._GC-01-095-5-12	CC	CC	CC	AA	GG	GG	AA	GG	GG	GG	AA	CC	CC	AA
4._GC-01-095-5-12	CC	CC	CC	AA	GG	GG	AA	GG	GG	GG	AA	CC	CC	AA
5._GC-01-095-5-12	CC	CC	CC	AA	GG	GG	AA	GG	GG	GG	AA	CC	CC	AA
6._GC-01-095-5-12	CC	CC	CC	AA	GG	GG	AA	GG	GG	GG	AA	CC	CC	AA
7._GC-01-095-5-12	CC	CC	CC	AA	GG	GG	AA	GG	GG	GG	AA	CC	CC	AA
8._GU_123_/C	CC	__	CC	AA	GG	__	AA	GG	GG	GG	__	__	__	AA
9._GU_123_/C	CC	__	CC	AA	GG	__	AA	GG	GG	GG	__	__	__	AA
10._GU_123_/C	CC	__	CC	AA	GG	__	AA	GG	GG	GG	__	__	__	AA
11._GU_123_/C	CC	__	CC	AA	GG	__	AA	GG	GG	GG	__	__	__	AA
12._GU_123_/C	CC	__	CC	AA	GG	__	AA	GG	GG	GG	__	__	__	AA
13._GU_123_/C	CC	__	CC	AA	GG	__	AA	GG	GG	GG	__	__	__	AA
14._GU_123_/C	CC	__	CC	AA	GG	__	AA	GG	GG	GG	__	__	__	AA
15._GU_123_/C	CC	__	CC	AA	GG	__	AA	GG	GG	GG	__	__	__	AA
16._GU_123_/C	CC	__	CC	AA	GG	__	AA	GG	GG	GG	__	__	__	AA
17._GC-01-95-5-12	GG	GG	GG	AA	GG	GG	AA	GG	CC	CC	AA	__	__	__

	71	72	73	74	75	76	77	78	79	80	81	82	83	84
_Input profile	CC	AA	GG	CC	CC	GG	AA	GG	CC	TT	TT	CT	CC	CC
1._GC-01-095-5-12	CC	AA	GG	CC	CC	GG	AA	GG	CC	TT	TT	CT	CC	CC
2._GC-01-095-5-12	CC	AA	GG	CC	CC	GG	AA	GG	CC	TT	TT	CT	CC	CC
3._GC-01-095-5-12	CC	AA	GG	CC	CC	GG	AA	GG	CC	TT	TT	CT	CC	CC
4._GC-01-095-5-12	CC	AA	GG	CC	CC	GG	AA	GG	CC	TT	TT	CT	CC	CC
5._GC-01-095-5-12	CC	AA	GG	CC	CC	GG	AA	GG	CC	TT	TT	CT	CC	CC
6._GC-01-095-5-12	CC	AA	GG	CC	CC	GG	AA	GG	CC	TT	TT	CT	CC	CC
7._GC-01-095-5-12	CC	AA	GG	CC	CC	GG	AA	GG	CC	TT	TT	CT	CC	CC
8._GU_123_/C	CC	__	__	__	__	__	AA	GG	__	__	TT	CT	CC	__
9._GU_123_/C	CC	__	__	__	__	__	AA	GG	__	__	TT	CT	CC	__
10._GU_123_/C	CC	__	__	__	__	__	AA	GG	__	__	TT	CT	CC	__
11._GU_123_/C	CC	__	__	__	__	__	AA	GG	__	__	TT	CT	CC	__
12._GU_123_/C	CC	__	__	__	__	__	AA	GG	__	__	TT	CT	CC	__
13._GU_123_/C	CC	__	__	__	__	__	AA	GG	__	__	TT	CT	CC	__
14._GU_123_/C	CC	__	__	__	__	__	AA	GG	__	__	TT	CT	CC	__
15._GU_123_/C	CC	__	__	__	__	__	AA	GG	__	__	TT	CT	CC	__
16._GU_123_/C	CC	__	__	__	__	__	AA	GG	__	__	TT	CT	CC	__
17._GC-01-95-5-12	GG	AA	GG	CC	CC	__	AA	CC	GG	TT	AA	AG	__	GG

	85	86	87	88	89	90	91
_Input profile	AG	CC	CC	TT	TT	AA	GG	X_X	X_X	X_X	X_X	X_X	X_X	X_X
1._GC-01-095-5-12	AG	CC	CC	TT	TT	AA	GG	X_X	X_X	X_X	X_X	X_X	X_X	X_X
2._GC-01-095-5-12	AG	CC	CC	TT	TT	AA	GG	X_X	X_X	X_X	X_X	X_X	X_X	X_X
3._GC-01-095-5-12	AG	CC	CC	TT	TT	AA	GG	X_X	X_X	X_X	X_X	X_X	X_X	X_X
4._GC-01-095-5-12	AG	CC	CC	TT	TT	AA	GG	X_X	X_X	X_X	X_X	X_X	X_X	X_X
5._GC-01-095-5-12	AG	CC	CC	TT	TT	AA	GG	X_X	X_X	X_X	X_X	X_X	X_X	X_X
6._GC-01-095-5-12	AG	CC	CC	TT	TT	AA	GG	X_X	X_X	X_X	X_X	X_X	X_X	X_X
7._GC-01-095-5-12	AG	CC	CC	TT	TT	AA	GG	X_X	X_X	X_X	X_X	X_X	X_X	X_X
8._GU_123_/C	AG	__	CC	TT	TT	__	__	X_X	X_X	X_X	X_X	X_X	X_X	X_X
9._GU_123_/C	AG	__	CC	TT	TT	__	__	X_X	X_X	X_X	X_X	X_X	X_X	X_X
10._GU_123_/C	AG	__	CC	TT	TT	__	__	X_X	X_X	X_X	X_X	X_X	X_X	X_X
11._GU_123_/C	AG	__	CC	TT	TT	__	__	X_X	X_X	X_X	X_X	X_X	X_X	X_X
12._GU_123_/C	AG	__	CC	TT	TT	__	__	X_X	X_X	X_X	X_X	X_X	X_X	X_X
13._GU_123_/C	AG	__	CC	TT	TT	__	__	X_X	X_X	X_X	X_X	X_X	X_X	X_X
14._GU_123_/C	AG	__	CC	TT	TT	__	__	X_X	X_X	X_X	X_X	X_X	X_X	X_X
15._GU_123_/C	AG	__	CC	TT	TT	__	__	X_X	X_X	X_X	X_X	X_X	X_X	X_X
16._GU_123_/C	AG	__	CC	TT	TT	__	__	X_X	X_X	X_X	X_X	X_X	X_X	X_X
17._GC-01-95-5-12	__	__	GG	AA	AA	TT	GG	X_X	X_X	X_X	X_X	X_X	X_X	X_X

Input profile: GU_123_/C GC-01-095-5-12

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Mars Center for Cocoa Science, Brazil

Location: Tree: 13

Notes: 13 > FP4

1._GU_123_/C GC-01-095-5-12

identical
91 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 14

Notes: 14

2._GU_123_/C GC-01-095-5-12

identical
91 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 9

Notes: 9

3._GU_123_/C GC-01-095-5-12

identical
91 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 6

Notes: 6

4._GU_123_/C GC-01-095-5-12

identical
91 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 4

Notes: 4 > FP3

5._GU_123_/C GC-01-095-5-12

identical
91 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 2

Notes: 2

6._GU_123_/C GC-01-095-5-12

identical
91 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 1

Notes: 1 > FP1

7._GU_123_/C GC-01-095-5-12

identical
90 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 3

Notes: 3

8._GU_123_/C

identical
39 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 1512 13 > FP4

Dapeng Zhang, 2016

9._GU_123_/C

identical
39 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 1512 2

Dapeng Zhang, 2016

Population Assignment:

Dapeng Zhang, 2016

10._GU_123_/C

identical
39 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 1512 3

Dapeng Zhang, 2016

11._GU_123_/C

identical
39 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 1512 6

Dapeng Zhang, 2016

12._GU_123_/C

identical
39 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 1512 9

Dapeng Zhang, 2016

13._GU_123_/C

identical
39 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 1512 14

Dapeng Zhang, 2016

14._GU_123_/C

identical
39 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 1512 1 > FP

Dapeng Zhang, 2016

15._GU_123_/C

identical
39 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 1512 4 > FP3

Dapeng Zhang, 2016

16._GU_123_/C

identical
39 shared markers

View View all Clone Any

Cocoa Research Institute of Ghana (CRIG), Ghana

Location: Q6_EXT_2 44

Dapeng Zhang, 2016

17._GU_123_/C GC-01-95-5-12

48.1 %
77 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Field: 1, Block: 5, Rep: 12, Tree: 2

Notes: MCCS_Structure_refs_above_0.9membership

Key to SNP Markers

Key to SNP Markers

1	TcSNP1075	2	TcSNP534	3	TcSNP591	4	TcSNP42	5	TcSNP418
6	TcSNP702	7	TcSNP1096	8	TcSNP1060	9	TcSNP1165	10	TcSNP429
11	TcSNP75	12	TcSNP891	13	TcSNP122	14	TcSNP316	15	TcSNP521
16	TcSNP1062	17	TcSNP836	18	TcSNP878	19	TcSNP929	20	TcSNP413
21	TcSNP653	22	TcSNP1149	23	TcSNP174	24	TcSNP32	25	TcSNP372
26	TcSNP448	27	TcSNP872	28	TcSNP953	29	TcSNP1034	30	TcSNP1111
31	TcSNP577	32	TcSNP90	33	TcSNP998	34	TcSNP150	35	TcSNP28
36	TcSNP751	37	TcSNP1484	38	TcSNP602	39	TcSNP561	40	TcSNP894
41	TcSNP1063	42	TcSNP1126	43	TcSNP1270	44	TcSNP606	45	TcSNP329
46	TcSNP689	47	TcSNP944	48	TcSNP1242	49	TcSNP1383	50	TcSNP547
51	TcSNP776	52	TcSNP1309	53	TcSNP151	54	TcSNP1520	55	TcSNP799
56	TcSNP899	57	TcSNP226	58	TcSNP1439	59	TcSNP1442	60	TcSNP193
61	TcSNP25	62	TcSNP364	63	TcSNP144	64	TcSNP230	65	TcSNP560
66	TcSNP723	67	TcSNP731	68	TcSNP701	69	TcSNP1041	70	TcSNP645
71	TcSNP917	72	Tcm003s01336581	73	Tcm003s07402719	74	Tcm001s00947643	75	Tcm006s26664133
76	Tcm002s20575712	77	TcSNP529	78	TcSNP1458	79	TcSNP60	80	TcSNP430
81	TcSNP619	82	TcSNP994	83	TcSNP1144	84	TcSNP1156	85	TcSNP469
86	TcSNP999	87	TcSNP242	88	TcSNP1253	89	TcSNP1414	90	TcSNP154
91	TcSNP240